View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0249_high_7 (Length: 317)

Name: NF0249_high_7
Description: NF0249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0249_high_7
NF0249_high_7
[»] chr5 (7 HSPs)
chr5 (44-289)||(15805197-15805442)
chr5 (7-77)||(15805523-15805593)
chr5 (150-274)||(15805164-15805288)
chr5 (61-140)||(12597380-12597459)
chr5 (173-243)||(12597298-12597368)
chr5 (161-221)||(30419927-30419987)
chr5 (200-278)||(12597311-12597389)
[»] chr8 (10 HSPs)
chr8 (58-289)||(3366234-3366468)
chr8 (53-230)||(31177875-31178055)
chr8 (61-229)||(3389053-3389224)
chr8 (61-148)||(3319932-3320019)
chr8 (145-278)||(3319778-3319911)
chr8 (198-280)||(3319824-3319906)
chr8 (53-99)||(3405547-3405593)
chr8 (209-278)||(31177875-31177944)
chr8 (58-97)||(3430518-3430557)
chr8 (197-250)||(3389144-3389197)
[»] chr3 (1 HSPs)
chr3 (64-274)||(6903523-6903736)
[»] chr7 (2 HSPs)
chr7 (63-107)||(13938457-13938501)
chr7 (63-107)||(39287485-39287529)
[»] scaffold0468 (1 HSPs)
scaffold0468 (58-113)||(2929-2984)
[»] chr2 (1 HSPs)
chr2 (61-107)||(14765632-14765678)


Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 44 - 289
Target Start/End: Complemental strand, 15805442 - 15805197
Alignment:
Q  44 aagttgttactcatttctggttcaagcataaacattctcccactctctttgcaagtcttgtaaatatttttctatttgcgttcggtaatggttcattctt 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15805442 aagttgttactcatttctggttcaagcataaacattctcccactctctttgcaagtcttgtaaatatttttctatttgcgttcggtaatggttcattctt 15805343  T
Q  144 gacaagtgatggttccattttcacatcgggtgatggttgtacttcctctttagctgatggctctattttcacattaggtgatggttgtacatcctcttca 243  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15805342 gacaagtgatggttccattttcacatcgggtgatggttgtgcttcctctttagctgatggctctattttcacattaggtgatggttgtacatcctcttca 15805243  T
Q  244 gctgatgcctccgttttcacatcaagtgatggttgtagttgctctt 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  15805242 gctgatgcctccgttttcacatcaagtgatggttgtagttgctctt 15805197  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 15805593 - 15805523
Alignment:
Q  7 gaaacaaaggcaagtaacttggcacaataggttcattaagttgttactcatttctggttcaagcataaaca 77  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15805593 gaaacaaaggcaagcaacttggcacaataggttcattaagttgttactcatttctggttcaagcataaaca 15805523  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 150 - 274
Target Start/End: Complemental strand, 15805288 - 15805164
Alignment:
Q  150 tgatggttccattttcacatcgggtgatggttgtacttcctctttagctgatggctctattttcacattaggtgatggttgtacatcctcttcagctgat 249  Q
    |||||| || ||||||||||  |||||||||||||| ||||||| |||||||| |||  ||||||||| | ||||||||||||  | |||||| || |||    
T  15805288 tgatggctctattttcacattaggtgatggttgtacatcctcttcagctgatgcctccgttttcacatcaagtgatggttgtagttgctcttcggccgat 15805189  T
Q  250 gcctccgttttcacatcaagtgatg 274  Q
    |||||| ||||||||  ||||||||    
T  15805188 gcctccattttcacactaagtgatg 15805164  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 12597459 - 12597380
Alignment:
Q  61 tggttcaagcataaacattctcccactctctttgcaagtcttgtaaatatttttctatttgcgttcggtaatggttcatt 140  Q
    ||||||||||| ||||||||||||||||||||||||| || | | ||||||||||  ||||  ||| ||||||| |||||    
T  12597459 tggttcaagcacaaacattctcccactctctttgcaaatcctatgaatatttttccgtttggcttcagtaatggctcatt 12597380  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 12597368 - 12597298
Alignment:
Q  173 gtgatggttgtacttcctctttagctgatggctctattttcacattaggtgatggttgtacatcctcttca 243  Q
    |||||||| |||||||||||| ||||||||||||  ||||| |||| ||||||||||| || ||| |||||    
T  12597368 gtgatggtcgtacttcctcttcagctgatggctccgttttcccattcggtgatggttgcacctccacttca 12597298  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 30419987 - 30419927
Alignment:
Q  161 ttttcacatcgggtgatggttgtacttcctctttagctgatggctctattttcacattagg 221  Q
    ||||||||||  | |||| |||||||||||||| || |||||| |||||||||||||||||    
T  30419987 ttttcacatcaagggatgattgtacttcctcttcaggtgatggatctattttcacattagg 30419927  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 278
Target Start/End: Complemental strand, 12597389 - 12597311
Alignment:
Q  200 atggctctattttcacattaggtgatggttgtacatcctcttcagctgatgcctccgttttcacatcaagtgatggttg 278  Q
    |||||||  |||| ||| || |||||||| |||| |||||||||||||||| |||||||||| |||   ||||||||||    
T  12597389 atggctcattttttacagtaagtgatggtcgtacttcctcttcagctgatggctccgttttcccattcggtgatggttg 12597311  T

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Target: chr8 (Bit Score: 173; Significance: 5e-93; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 58 - 289
Target Start/End: Complemental strand, 3366468 - 3366234
Alignment:
Q  58 ttctggttcaagcataaacattctcccactctctttgcaagtcttgtaaatatttttctatttgcgttcggtaatggttcattcttgacaa---gtgatg 154  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||   ||||||    
T  3366468 ttctggttcatgcataaacattctcccactctctttgcaagtcttgtaaagatttttctatttgtgtttggtaatggttcattcttgacaacaagtgatg 3366369  T
Q  155 gttccattttcacatcgggtgatggttgtacttcctctttagctgatggctctattttcacattaggtgatggttgtacatcctcttcagctgatgcctc 254  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||||| |||||||| ||||||||||||||||||| |||    
T  3366368 gttccattttcacattgggtgatggttgtacttcctcttcagctgatggttctgttttcacattaggagatggttgcacatcctcttcagctgatggctc 3366269  T
Q  255 cgttttcacatcaagtgatggttgtagttgctctt 289  Q
     ||||||||||||||||||||||||||||||||||    
T  3366268 tgttttcacatcaagtgatggttgtagttgctctt 3366234  T

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Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 53 - 230
Target Start/End: Complemental strand, 31178055 - 31177875
Alignment:
Q  53 ctcatttctggttcaagcataaacattctcccactctctttgcaagtcttgtaaatatttttctatttgcgttcggtaatggttcattcttg---acaag 149  Q
    |||| |||||| ||||||||||||||||||||| |||||||||||||||||| || |||||||||||||  ||||||| |||||||||||||   |||||    
T  31178055 ctcaattctggatcaagcataaacattctcccagtctctttgcaagtcttgtgaagatttttctatttgtcttcggtattggttcattcttgacaacaag 31177956  T
Q  150 tgatggttccattttcacatcgggtgatggttgtacttcctctttagctgatggctctattttcacattaggtgatggttg 230  Q
    | |||||||| ||||||||||  ||||||| || || ||||||| ||||||||||||  ||||||||||||||||||||||    
T  31177955 taatggttccgttttcacatcaagtgatggctgcacgtcctcttcagctgatggctccgttttcacattaggtgatggttg 31177875  T

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Target: chr8; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 61 - 229
Target Start/End: Original strand, 3389053 - 3389224
Alignment:
Q  61 tggttcaagcataaacattctcccactctctttgcaagtcttgtaaatatttttctatttgcgttcggtaatggttcattcttg---acaagtgatggtt 157  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||  |||||||| |||  ||| |||||||||||||||||   |||| ||||||||    
T  3389053 tggttcaagcataaacattctcccactctctttgcaagtctcgtaaagttttttctacttgtcttcagtaatggttcattcttgacaacaactgatggtt 3389152  T
Q  158 ccattttcacatcgggtgatggttgtacttcctctttagctgatggctctattttcacattaggtgatggtt 229  Q
    |||||||||||||  ||||||||||||||||||||| ||||||||| || ||||| ||||| ||||| ||||    
T  3389153 ccattttcacatcaagtgatggttgtacttcctcttcagctgatggatccatttttacattgggtgacggtt 3389224  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 148
Target Start/End: Complemental strand, 3320019 - 3319932
Alignment:
Q  61 tggttcaagcataaacattctcccactctctttgcaagtcttgtaaatatttttctatttgcgttcggtaatggttcattcttgacaa 148  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||| |||  ||||||||||||||||| |||||||    
T  3320019 tggttcaagcataaacattttcccactctctttgccagtcttgtaaagatttttctacttgtcttcggtaatggttcatttttgacaa 3319932  T

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Target: chr8; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 145 - 278
Target Start/End: Complemental strand, 3319911 - 3319778
Alignment:
Q  145 acaagtgatggttccattttcacatcgggtgatggttgtacttcctctttagctgatggctctattttcacattaggtgatggttgtacatcctcttcag 244  Q
    ||||||||||| |||||||||||||  ||||||  |||||||||||||| ||||||||||||  |||||| |||  ||||||||||||  ||| ||||||    
T  3319911 acaagtgatggctccattttcacattaggtgataattgtacttcctcttcagctgatggctccgttttcaaattcagtgatggttgtatttccacttcag 3319812  T
Q  245 ctgatgcctccgttttcacatcaagtgatggttg 278  Q
    |||||| ||| ||||| ||||   ||||||||||    
T  3319811 ctgatgtctcggtttttacattgggtgatggttg 3319778  T

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Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 198 - 280
Target Start/End: Complemental strand, 3319906 - 3319824
Alignment:
Q  198 tgatggctctattttcacattaggtgatggttgtacatcctcttcagctgatgcctccgttttcacatcaagtgatggttgta 280  Q
    ||||||||| ||||||||||||||||||  |||||| |||||||||||||||| ||||||||||| ||  |||||||||||||    
T  3319906 tgatggctccattttcacattaggtgataattgtacttcctcttcagctgatggctccgttttcaaattcagtgatggttgta 3319824  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 3405547 - 3405593
Alignment:
Q  53 ctcatttctggttcaagcataaacattctcccactctctttgcaagt 99  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||    
T  3405547 ctcaattctggttcaagcataaacatcctcccactctctttgcaagt 3405593  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 278
Target Start/End: Complemental strand, 31177944 - 31177875
Alignment:
Q  209 ttttcacattaggtgatggttgtacatcctcttcagctgatgcctccgttttcacatcaagtgatggttg 278  Q
    ||||||||| | ||||||| || || |||||||||||||||| |||||||||||||| | ||||||||||    
T  31177944 ttttcacatcaagtgatggctgcacgtcctcttcagctgatggctccgttttcacattaggtgatggttg 31177875  T

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Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 97
Target Start/End: Complemental strand, 3430557 - 3430518
Alignment:
Q  58 ttctggttcaagcataaacattctcccactctctttgcaa 97  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  3430557 ttctggttcatgcataaacattctcccactctctttgcaa 3430518  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 3389144 - 3389197
Alignment:
Q  197 ctgatggctctattttcacattaggtgatggttgtacatcctcttcagctgatg 250  Q
    ||||||| || |||||||||| | ||||||||||||| ||||||||||||||||    
T  3389144 ctgatggttccattttcacatcaagtgatggttgtacttcctcttcagctgatg 3389197  T

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Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 64 - 274
Target Start/End: Original strand, 6903523 - 6903736
Alignment:
Q  64 ttcaagcataaacattctcccactctctttgcaagtcttgtaaatatttttctatttgcgttcggtaatggttcattcttgacaa---gtgatggttcca 160  Q
    |||||||||||||||||||||| | |||||| || ||||  |||||||||| |||||   || ||||||||  |||| ||||  |   ||||||||||||    
T  6903523 ttcaagcataaacattctcccaatttctttgaaaatcttacaaatatttttgtatttctcttaggtaatggcccattgttgatgataggtgatggttcca 6903622  T
Q  161 ttttcacatcgggtgatggttgtacttcctctttagctgatggctctattttcacattaggtgatggttgtacatcctcttcagctgatgcctccgtttt 260  Q
    | ||||||||  |||||||||| ||||| |||| |  | ||| |||  |||||||||||| ||||||||| || |||  ||||| | ||| |||| | ||    
T  6903623 tcttcacatcaagtgatggttgcacttcatcttcaagtaatgactcccttttcacattagatgatggttgcacttccagttcaggtaatggctccatctt 6903722  T
Q  261 cacatcaagtgatg 274  Q
    ||||||| ||||||    
T  6903723 cacatcaggtgatg 6903736  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 13938501 - 13938457
Alignment:
Q  63 gttcaagcataaacattctcccactctctttgcaagtcttgtaaa 107  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||    
T  13938501 gttcaagcataaacattttccaactctctttgcaagtcttgtaaa 13938457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 39287529 - 39287485
Alignment:
Q  63 gttcaagcataaacattctcccactctctttgcaagtcttgtaaa 107  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||    
T  39287529 gttcaagcataaacattttccaactctctttgcaagtcttgtaaa 39287485  T

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Target: scaffold0468 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 2929 - 2984
Alignment:
Q  58 ttctggttcaagcataaacattctcccactctctttgcaagtcttgtaaatatttt 113  Q
    ||||| |||||||||||||||||||||||| |||||| || ||||  |||||||||    
T  2929 ttctgattcaagcataaacattctcccactttctttgaaaatcttacaaatatttt 2984  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 14765632 - 14765678
Alignment:
Q  61 tggttcaagcataaacattctcccactctctttgcaagtcttgtaaa 107  Q
    ||||||||||||||||||| ||| ||||||||||| |||||| ||||    
T  14765632 tggttcaagcataaacattttcctactctctttgcgagtcttataaa 14765678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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