View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0249_low_1 (Length: 391)
Name: NF0249_low_1
Description: NF0249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0249_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 15288543 - 15288911
Alignment:
| Q |
1 |
gcgttgaagcagttacagcggttacgagacggtggttgaagttgcggttgcggttgttcttccatgaaactctgaaccattttcgccaagcaaacagagc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
15288543 |
gcgttgaagcagttacagcggttacgagacggtggttgaagttgcggttgcggttgttcttccatgaaactttgaaccattttcgccaagcaaacagagc |
15288642 |
T |
|
| Q |
101 |
ttggttccaactcagcaactccaccagcaccatctttagtggtattgttcttcggaaaaggtttctcgaaagcgaaaaacctcttcaacctccatttcga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15288643 |
ttggttccaactcagcaactccaccagcaccatctttagtggtattgttcttcggaaaaggtttctcgaaagcgaaaaacctcttcaacctccacttcga |
15288742 |
T |
|
| Q |
201 |
aactggttcatttcgaaccagttccgtagtggctttctctgaatctatgtcaatcggttggatcttcaacggagccgttaatcttcttctcaaacaacaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
15288743 |
aactggttcatttcgaaccagttccgtagtggctttctctgaatctatgtcaatcggttggatcttcaacggagccattaatcttcttctcaaacaagaa |
15288842 |
T |
|
| Q |
301 |
aaatgctagctttaaattgaagagtcaaaattacaagctagtcaacaaagtcaataactcatagtcaca |
369 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15288843 |
aaatgctagctttaaattgaagagtcaaaattacaagctagtcaacaaagtcaataactcatagtcaca |
15288911 |
T |
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