View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0249_low_12 (Length: 284)
Name: NF0249_low_12
Description: NF0249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0249_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 48569090 - 48569018
Alignment:
| Q |
163 |
ccacaatgaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtt |
235 |
Q |
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| T |
48569090 |
ccacaatgaatgttcaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtt |
48569018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 48569201 - 48569141
Alignment:
| Q |
44 |
aggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaagatttc |
104 |
Q |
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| T |
48569201 |
aggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaagatttc |
48569141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 10822202 - 10822265
Alignment:
| Q |
170 |
gaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacagg |
233 |
Q |
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| T |
10822202 |
gaatgttcaccttacgcatagtttcctctgattcatatactttttctggaaaatgccacacagg |
10822265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 36145194 - 36145131
Alignment:
| Q |
170 |
gaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacagg |
233 |
Q |
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| T |
36145194 |
gaatgttcaccttacgcatggtatcctctgattcatatactttttctggaaaatgccacacagg |
36145131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 10821885 - 10821937
Alignment:
| Q |
46 |
gtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaa |
98 |
Q |
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| T |
10821885 |
gtattcgaaagatctcctaagactgatttcaaggcagattctgcacactgcaa |
10821937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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