View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0249_low_18 (Length: 240)

Name: NF0249_low_18
Description: NF0249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0249_low_18
NF0249_low_18
[»] chr8 (9 HSPs)
chr8 (1-106)||(2048088-2048193)
chr8 (1-106)||(2038845-2038950)
chr8 (1-79)||(2029849-2029927)
chr8 (1-99)||(10769496-10769594)
chr8 (1-106)||(2034767-2034872)
chr8 (1-98)||(2051982-2052079)
chr8 (1-96)||(2055839-2055934)
chr8 (1-98)||(1948087-1948184)
chr8 (1-70)||(2059043-2059112)
[»] chr4 (1 HSPs)
chr4 (6-87)||(48904878-48904959)
[»] chr2 (4 HSPs)
chr2 (8-97)||(28734894-28734983)
chr2 (8-73)||(28742051-28742116)
chr2 (8-79)||(28699412-28699483)
chr2 (18-69)||(28782875-28782926)


Alignment Details
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 2048088 - 2048193
Alignment:
Q  1 catcttcaaagctctatggacctatgaaagaactattatcagaagacaatcctcctaaatacagagaaaccacagttgcagactatgtaacctactttgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2048088 catcttcaaagctctatggacctatgaaagaactattatcagaagacaatcctcctaaatacagagaaaccacagttgcagactatgtaacctactttgt 2048187  T
Q  101 aaaaaa 106  Q
    ||||||    
T  2048188 aaaaaa 2048193  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 2038845 - 2038950
Alignment:
Q  1 catcttcaaagctctatggacctatgaaagaactattatcagaagacaatcctcctaaatacagagaaaccacagttgcagactatgtaacctactttgt 100  Q
    |||| ||||||||||||||||| || || || ||||||||||||||||||||||||||||||||||||||||||||||| |||||| || | ||||||||    
T  2038845 catcctcaaagctctatggaccaataaaggatctattatcagaagacaatcctcctaaatacagagaaaccacagttgctgactatctagcgtactttgt 2038944  T
Q  101 aaaaaa 106  Q
    | ||||    
T  2038945 agaaaa 2038950  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 2029849 - 2029927
Alignment:
Q  1 catcttcaaagctctatggacctatgaaagaactattatcagaagacaatcctcctaaatacagagaaaccacagttgc 79  Q
    |||| ||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  2029849 catcgtcaaagctctatggacctatgaaggaactattatcagaaaacaatcctcccaaatacagagaaaccacagttgc 2029927  T

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Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 10769496 - 10769594
Alignment:
Q  1 catcttcaaagctctatggacctatgaaagaactattatcagaagacaatcctcctaaatacagagaaaccacagttgcagactatgtaacctactttg 99  Q
    |||| |||||||||||||||||||| || |||||||||||||||||||||||||| | ||||||||||||| ||||||| ||||||||| |||| ||||    
T  10769496 catcctcaaagctctatggacctataaaggaactattatcagaagacaatcctcccatatacagagaaacctcagttgctgactatgtagcctattttg 10769594  T

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Target: chr8; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 2034767 - 2034872
Alignment:
Q  1 catcttcaaagctctatggacctatgaaagaactattatcagaagacaatcctcctaaatacagagaaaccacagttgcagactatgtaacctactttgt 100  Q
    |||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| || ||| | || |||||| | |||||||     
T  2034767 catcctcaaagctctatggacctataaaggaactattatcagaagacaatcctcctaaatacagagaaacaacggtttctgattatgtagcttactttga 2034866  T
Q  101 aaaaaa 106  Q
    ||||||    
T  2034867 aaaaaa 2034872  T

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Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 2051982 - 2052079
Alignment:
Q  1 catcttcaaagctctatggacctatgaaagaactattatcagaagacaatcctcctaaatacagagaaaccacagttgcagactatgtaacctacttt 98  Q
    |||||||||||||||||||||||||||| |||||  ||||||||||||||||||| ||||||||||||||  | ||||| || |||||| ||||||||    
T  2051982 catcttcaaagctctatggacctatgaaggaactgctatcagaagacaatcctcccaaatacagagaaacttctgttgctgattatgtagcctacttt 2052079  T

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Target: chr8; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 2055839 - 2055934
Alignment:
Q  1 catcttcaaagctctatggacctatgaaagaactattatcagaagacaatcctcctaaatacagagaaaccacagttgcagactatgtaacctact 96  Q
    |||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||| |||||| || ||||| || |||||| ||||||    
T  2055839 catcctcaaagctctatggaccaatgaaggaactgttatcagaagacaatcctcctaaatacaaagaaactactgttgctgattatgtagcctact 2055934  T

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Target: chr8; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 1948184 - 1948087
Alignment:
Q  1 catcttcaaagctctatggacctatgaaagaactattatcagaagacaatcctcctaaatacagagaaaccacagttgcagactatgtaacctacttt 98  Q
    |||| ||||||||||||||||||||||| ||||||||||||||| | |||||| | ||||| ||||||||||||||||| || |||| | ||||||||    
T  1948184 catcgtcaaagctctatggacctatgaaggaactattatcagaaaagaatccttccaaatatagagaaaccacagttgctgattatgcagcctacttt 1948087  T

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Target: chr8; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 2059043 - 2059112
Alignment:
Q  1 catcttcaaagctctatggacctatgaaagaactattatcagaagacaatcctcctaaatacagagaaac 70  Q
    |||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||    
T  2059043 catcttcaaaactctatggaccaatgaaggaactattatcagaagacaatcctcccaaatacagagaaac 2059112  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 48904959 - 48904878
Alignment:
Q  6 tcaaagctctatggacctatgaaagaactattatcagaagacaatcctcctaaatacagagaaaccacagttgcagactatg 87  Q
    |||| ||||||||||||||| || ||||||||||| |||||||||||||| |||||||||||||||||| ||| ||||||||    
T  48904959 tcaaggctctatggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaaccacaattggagactatg 48904878  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 28734983 - 28734894
Alignment:
Q  8 aaagctctatggacctatgaaagaactattatcagaagacaatcctcctaaatacagagaaaccacagttgcagactatgtaacctactt 97  Q
    |||||| ||||||||||| | |||| |||||||||||||||| ||||| | ||| |||||||||||  |||| || |||||| |||||||    
T  28734983 aaagctttatggacctataacagaattattatcagaagacaaccctcccagatatagagaaaccacgtttgctgattatgtagcctactt 28734894  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 28742116 - 28742051
Alignment:
Q  8 aaagctctatggacctatgaaagaactattatcagaagacaatcctcctaaatacagagaaaccac 73  Q
    |||||||||||||||||| |||||| | |||||||||||||| ||||| | ||| |||||||||||    
T  28742116 aaagctctatggacctataaaagaaattttatcagaagacaaccctccaagatatagagaaaccac 28742051  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 28699483 - 28699412
Alignment:
Q  8 aaagctctatggacctatgaaagaactattatcagaagacaatcctcctaaatacagagaaaccacagttgc 79  Q
    |||||| ||||||||||| | |||| ||||||||||| |||| ||||| | ||||| ||||||||| |||||    
T  28699483 aaagctttatggacctataacagaattattatcagaaaacaaccctcccagatacaaagaaaccactgttgc 28699412  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 28782926 - 28782875
Alignment:
Q  18 ggacctatgaaagaactattatcagaagacaatcctcctaaatacagagaaa 69  Q
    |||||||| |||||| | |||||||||||||||||||| ||||||| |||||    
T  28782926 ggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaa 28782875  T

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