View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0249_low_20 (Length: 234)
Name: NF0249_low_20
Description: NF0249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0249_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 72 - 224
Target Start/End: Complemental strand, 45565676 - 45565524
Alignment:
| Q |
72 |
tttctttgaagtgtgcttggaggtattcttcctactcttatgagacttcaagagagaggagttctatgttcaaatggatgtccccattgtgaaacaaact |
171 |
Q |
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| T |
45565676 |
tttctttgaagtgtgcttggaggtattcttcctactcttatgagacttcaaaagagaggagttccatgttcaaatggatgtccccattgtgaaacaaact |
45565577 |
T |
|
| Q |
172 |
atgagaacgattggatgtaaagcggcaaaacaaatatggtgcgaggctgatct |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45565576 |
atgagaacgattggatgtaaagcggcaaaacaaatatggtgcgaggctgatct |
45565524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 45286940 - 45286972
Alignment:
| Q |
153 |
ccccattgtgaaacaaactatgagaacgattgg |
185 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
45286940 |
ccccattgtgaaacaaactacgagaacgattgg |
45286972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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