View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0249_low_22 (Length: 210)
Name: NF0249_low_22
Description: NF0249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0249_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 61 - 180
Target Start/End: Original strand, 5268892 - 5269011
Alignment:
| Q |
61 |
aatatggtgatagttttcgacttcgataagaccataattgagtgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaac |
160 |
Q |
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| T |
5268892 |
aatattgtgatagttttcgacttcgataaaaccataattgattgtgatagtgataattgggttgttgatgaattaggtttcaccgatttgttcaatcaac |
5268991 |
T |
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| Q |
161 |
tccttccctctatgcctttc |
180 |
Q |
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| T |
5268992 |
tccttcccactatgcctttc |
5269011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 71 - 178
Target Start/End: Original strand, 5249667 - 5249774
Alignment:
| Q |
71 |
tagttttcgacttcgataagaccataattgagtgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttccctc |
170 |
Q |
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| T |
5249667 |
tagtttttgattttgataaaaccataattgattgtgacagtgataattgggttattgatgaattgggtttcactgatttgttcaatcagctccttcccac |
5249766 |
T |
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| Q |
171 |
tatgcctt |
178 |
Q |
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| T |
5249767 |
tatgcctt |
5249774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 74 - 178
Target Start/End: Complemental strand, 5272878 - 5272774
Alignment:
| Q |
74 |
ttttcgacttcgataagaccataattgagtgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttccctctat |
173 |
Q |
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| T |
5272878 |
tttttgactttgacaaaaccatcattgattgtgatagtgataattggttgattgatgaattgggtttcaccgatttgttcaatcagctccttcccacaat |
5272779 |
T |
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| Q |
174 |
gcctt |
178 |
Q |
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| T |
5272778 |
gcctt |
5272774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 5276826 - 5276756
Alignment:
| Q |
97 |
attgagtgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttcc |
167 |
Q |
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| T |
5276826 |
attgattgtgacagtgataattggttgattgatgaattgggtttcactgatttgttcaatcaactccttcc |
5276756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 19569150 - 19569245
Alignment:
| Q |
85 |
gataagaccataattgagtgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttccctctatgcctttc |
180 |
Q |
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| T |
19569150 |
gataaaaccttaattgattgtgatagtgataattgggatgttgatgaattaggtttcatcgatttgttcaatcaactccttcttactatgcctttc |
19569245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 168
Target Start/End: Complemental strand, 26315844 - 26315749
Alignment:
| Q |
73 |
gttttcgacttcgataagaccataattgagtgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttccc |
168 |
Q |
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| T |
26315844 |
gttttcgactttgacaaaaccattattgaatgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactctttccc |
26315749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 161
Target Start/End: Complemental strand, 43110952 - 43110864
Alignment:
| Q |
73 |
gttttcgacttcgataagaccataattgagtgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaact |
161 |
Q |
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| T |
43110952 |
gtttttgactttgacaaaaccatagttgaatgtgacagtgataactgggttgttgatgaattgggtttcactgatttgttcaatgaact |
43110864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 140
Target Start/End: Complemental strand, 43105463 - 43105420
Alignment:
| Q |
97 |
attgagtgtgatagtgataattgggttcttgatgaattaggttt |
140 |
Q |
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| T |
43105463 |
attgaatgtgatagtgataattgggttcttgatgagtttggttt |
43105420 |
T |
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