View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0249_low_22 (Length: 210)
Name: NF0249_low_22
Description: NF0249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0249_low_22
Alignment Details
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 61 - 180
Target Start/End: Original strand, 5268892 - 5269011
Alignment:
Q
61
aatatggtgatagttttcgacttcgataagaccataattgagtgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaac
160
Q
||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
T
5268892
aatattgtgatagttttcgacttcgataaaaccataattgattgtgatagtgataattgggttgttgatgaattaggtttcaccgatttgttcaatcaac
5268991
T
Q
161
tccttccctctatgcctttc
180
Q
|||||||| |||||||||||
T
5268992
tccttcccactatgcctttc
5269011
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 71 - 178
Target Start/End: Original strand, 5249667 - 5249774
Alignment:
Q
71
tagttttcgacttcgataagaccataattgagtgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttccctc
170
Q
||||||| || || ||||| ||||||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||| |
T
5249667
tagtttttgattttgataaaaccataattgattgtgacagtgataattgggttattgatgaattgggtttcactgatttgttcaatcagctccttcccac
5249766
T
Q
171
tatgcctt
178
Q
||||||||
T
5249767
tatgcctt
5249774
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 74 - 178
Target Start/End: Complemental strand, 5272878 - 5272774
Alignment:
Q
74
ttttcgacttcgataagaccataattgagtgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttccctctat
173
Q
|||| ||||| || || ||||| ||||| |||||||||||||||||| | |||||||||| ||||||||||||||||||||||| ||||||||| | ||
T
5272878
tttttgactttgacaaaaccatcattgattgtgatagtgataattggttgattgatgaattgggtttcaccgatttgttcaatcagctccttcccacaat
5272779
T
Q
174
gcctt
178
Q
|||||
T
5272778
gcctt
5272774
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 5276826 - 5276756
Alignment:
Q
97
attgagtgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttcc
167
Q
||||| ||||| |||||||||||| | |||||||||| |||||||| |||||||||||||||||||||||
T
5276826
attgattgtgacagtgataattggttgattgatgaattgggtttcactgatttgttcaatcaactccttcc
5276756
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 19569150 - 19569245
Alignment:
Q
85
gataagaccataattgagtgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttccctctatgcctttc
180
Q
||||| ||| ||||||| ||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||| |||||||||||
T
19569150
gataaaaccttaattgattgtgatagtgataattgggatgttgatgaattaggtttcatcgatttgttcaatcaactccttcttactatgcctttc
19569245
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 168
Target Start/End: Complemental strand, 26315844 - 26315749
Alignment:
Q
73
gttttcgacttcgataagaccataattgagtgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttccc
168
Q
||||||||||| || || ||||| ||||| ||||| || ||||| |||||| |||||||||||||||||| |||||||||||||||||| |||||
T
26315844
gttttcgactttgacaaaaccattattgaatgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactctttccc
26315749
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 161
Target Start/End: Complemental strand, 43110952 - 43110864
Alignment:
Q
73
gttttcgacttcgataagaccataattgagtgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaact
161
Q
||||| ||||| || || |||||| |||| ||||| |||||||| |||||| |||||||||| |||||||| |||||||||||| ||||
T
43110952
gtttttgactttgacaaaaccatagttgaatgtgacagtgataactgggttgttgatgaattgggtttcactgatttgttcaatgaact
43110864
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 140
Target Start/End: Complemental strand, 43105463 - 43105420
Alignment:
Q
97
attgagtgtgatagtgataattgggttcttgatgaattaggttt
140
Q
||||| ||||||||||||||||||||||||||||| || |||||
T
43105463
attgaatgtgatagtgataattgggttcttgatgagtttggttt
43105420
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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