View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0249_low_4 (Length: 359)
Name: NF0249_low_4
Description: NF0249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0249_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 82 - 261
Target Start/End: Complemental strand, 1959995 - 1959816
Alignment:
| Q |
82 |
gagcacagagtggtagcaaatcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctataa |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1959995 |
gagcacagagtggtagcaaatcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctataa |
1959896 |
T |
|
| Q |
182 |
aggaattagtatcagaagataagcctccattgtatagggaaacaacagtgcatgattatgtttctttctccatggcaaga |
261 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1959895 |
aggaattagtatcagaagataatcctccaaagtatagggaaacaacagtgcatgattatgtttctttctccatggcaaga |
1959816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 82 - 261
Target Start/End: Original strand, 2023330 - 2023509
Alignment:
| Q |
82 |
gagcacagagtggtagcaaatcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctataa |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2023330 |
gagcacagagtggtagcaaatcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctataa |
2023429 |
T |
|
| Q |
182 |
aggaattagtatcagaagataagcctccattgtatagggaaacaacagtgcatgattatgtttctttctccatggcaaga |
261 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2023430 |
aggaattagtatcagaagataatcctccaaagtatagggaaacaacagtgcatgattatgtttctttctccatggcaaga |
2023509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1443 times since January 2019
Visitors: 2391