View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0249_low_6 (Length: 358)

Name: NF0249_low_6
Description: NF0249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0249_low_6
NF0249_low_6
[»] chr6 (7 HSPs)
chr6 (63-329)||(9759448-9759715)
chr6 (177-328)||(7218410-7218561)
chr6 (177-315)||(28604947-28605085)
chr6 (179-327)||(17227948-17228096)
chr6 (177-222)||(667382-667427)
chr6 (177-318)||(18295456-18295597)
chr6 (177-225)||(2894351-2894399)
[»] chr4 (17 HSPs)
chr4 (177-315)||(29123499-29123637)
chr4 (177-315)||(8110942-8111080)
chr4 (177-315)||(4303262-4303400)
chr4 (177-315)||(22340603-22340741)
chr4 (177-321)||(12915809-12915953)
chr4 (177-286)||(17826841-17826950)
chr4 (177-310)||(36951230-36951363)
chr4 (177-315)||(18116442-18116580)
chr4 (177-314)||(23158210-23158347)
chr4 (191-315)||(15705634-15705758)
chr4 (177-315)||(3621526-3621664)
chr4 (177-223)||(24059759-24059805)
chr4 (177-310)||(50693814-50693947)
chr4 (177-318)||(51872706-51872847)
chr4 (177-240)||(17469184-17469247)
chr4 (192-315)||(36279278-36279401)
chr4 (270-315)||(15649220-15649265)
[»] scaffold0003 (1 HSPs)
scaffold0003 (177-315)||(224786-224924)
[»] chr5 (8 HSPs)
chr5 (177-315)||(11266049-11266187)
chr5 (177-315)||(27891722-27891860)
chr5 (197-321)||(29150323-29150446)
chr5 (191-311)||(5825043-5825163)
chr5 (191-315)||(6678650-6678774)
chr5 (177-240)||(29322892-29322955)
chr5 (188-252)||(8896333-8896397)
chr5 (190-294)||(38931814-38931918)
[»] chr3 (14 HSPs)
chr3 (177-318)||(23571681-23571822)
chr3 (177-315)||(8595281-8595419)
chr3 (177-315)||(42462744-42462882)
chr3 (177-315)||(48547578-48547716)
chr3 (177-315)||(23603287-23603424)
chr3 (177-321)||(39632892-39633036)
chr3 (177-240)||(16664075-16664138)
chr3 (192-318)||(3514705-3514831)
chr3 (177-249)||(42459363-42459435)
chr3 (191-315)||(53152159-53152283)
chr3 (179-241)||(10754161-10754223)
chr3 (194-319)||(9819080-9819205)
chr3 (191-315)||(17153881-17154005)
chr3 (177-240)||(52196385-52196448)
[»] chr1 (7 HSPs)
chr1 (188-315)||(49369791-49369918)
chr1 (177-315)||(41342868-41343006)
chr1 (191-319)||(10003951-10004079)
chr1 (177-246)||(37668946-37669015)
chr1 (177-225)||(24545117-24545165)
chr1 (177-316)||(27029975-27030114)
chr1 (179-228)||(28520899-28520948)
[»] scaffold0032 (1 HSPs)
scaffold0032 (177-315)||(58456-58594)
[»] chr7 (17 HSPs)
chr7 (177-315)||(20705552-20705690)
chr7 (177-315)||(20873596-20873734)
chr7 (177-315)||(40891824-40891962)
chr7 (177-315)||(586808-586946)
chr7 (177-225)||(27987627-27987675)
chr7 (177-319)||(36575442-36575584)
chr7 (177-240)||(22865808-22865871)
chr7 (188-226)||(18815464-18815502)
chr7 (177-319)||(24819717-24819859)
chr7 (177-318)||(12121607-12121748)
chr7 (179-240)||(27868999-27869060)
chr7 (191-315)||(37075664-37075788)
chr7 (185-240)||(5196732-5196787)
chr7 (177-240)||(8457244-8457307)
chr7 (177-216)||(47548969-47549008)
chr7 (177-216)||(47553412-47553451)
chr7 (197-315)||(9403205-9403323)
[»] chr2 (9 HSPs)
chr2 (177-315)||(38938496-38938634)
chr2 (179-314)||(22300788-22300923)
chr2 (191-315)||(30275913-30276037)
chr2 (191-318)||(32349895-32350022)
chr2 (188-312)||(1258488-1258612)
chr2 (177-315)||(27914661-27914799)
chr2 (191-311)||(21963436-21963556)
chr2 (191-293)||(21964639-21964741)
chr2 (177-315)||(23384867-23385005)
[»] scaffold0041 (1 HSPs)
scaffold0041 (177-315)||(74322-74460)
[»] chr8 (5 HSPs)
chr8 (177-318)||(26077786-26077927)
chr8 (177-241)||(29532455-29532519)
chr8 (177-240)||(10801740-10801803)
chr8 (177-307)||(31423301-31423431)
chr8 (177-223)||(26390302-26390348)
[»] scaffold0289 (1 HSPs)
scaffold0289 (179-240)||(11164-11225)


Alignment Details
Target: chr6 (Bit Score: 175; Significance: 4e-94; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 63 - 329
Target Start/End: Original strand, 9759448 - 9759715
Alignment:
Q  63 ttctgaaatagtgatatcatatctaattctacttctgagcttattaattaaggtaacaaatcctacaaaatccnnnnnnntccaattaat-aaacaatct 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||| || |||||||||    
T  9759448 ttctgaaatagtgatatcatatctaattctacttctgagcttattaattaaggtaacaaatcctacaaaattaaaaaaaaatcaatttattaaacaatct 9759547  T
Q  162 attgaaattagaatgtttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgta 261  Q
    ||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||| |||||| ||||||| |||||||||||||||||  |||||||    
T  9759548 attgaaattagaatgtttttgtatgacatttctttccgaatagacttgctacaaaggataatctgcgcaaaaggaatgtctttgaggccacttttgtgta 9759647  T
Q  262 ttgtgcggctttgtgtggtaaggaggatgaaagagaccatatgttttttcaatgcgaccactacgggc 329  Q
    ||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  9759648 ttgtgcggctttgcgtggtaaggaggatgaaagggaccatctgttttttcaatgcgaccactacgggc 9759715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 177 - 328
Target Start/End: Original strand, 7218410 - 7218561
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||||| |||||||||||||||||||||||||| ||| || | ||||| |||||||||||||| |    ||| ||||||||||| |||||    
T  7218410 tttttgtttggcgtctttttctgaatagacttgctacaaaggataatttgcgtaaaaggaatgtctttgaggctaacaatgtatattgtgcggccttgtg 7218509  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatgcgaccactacggg 328  Q
    |||||||||||| |||||||||||| | ||||| ||||| || || ||||||    
T  7218510 tggtaaggaggaggaaagagaccatttatttttccaatgtgatcattacggg 7218561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 177 - 315
Target Start/End: Original strand, 28604947 - 28605085
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    |||||||||| ||||| ||||||||||||||||| ||||||||||| ||| | || || || ||  ||||||   |   ||||| ||| ||||| |||||    
T  28604947 tttttgtatggcgtctttttctgaatagacttgcaacaaaggacaacctgcgtaagaggaacgttcttgaggtttccaatgtgtcttgcgcggccttgtg 28605046  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| |||||||||||| ||||||| |||||    
T  28605047 tggtaaggaggaggaaagagaccatttgtttttccaatg 28605085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 327
Target Start/End: Complemental strand, 17228096 - 17227948
Alignment:
Q  179 tttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtg 278  Q
    ||||| || ||||||||||| |||||||||||||||||||||||| || ||||||| |||||| |||| |   || |||||  ||| ||||| |||||||    
T  17228096 tttgtctggcgtctctttctaaatagacttgctacaaaggacaatttgcgcaaaaggaatgtccttgatgtttcacttgtgacttgcgcggccttgtgtg 17227997  T
Q  279 gtaaggaggatgaaagagaccatatgttttttcaatgcgaccactacgg 327  Q
    || |||  || || || |||||| |||||||  | ||||||||||||||    
T  17227996 gtgaggtagaggacagggaccatttgtttttcaagtgcgaccactacgg 17227948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 667427 - 667382
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaa 222  Q
    ||||||| || |||||||||||||||||||||||||||||||||||    
T  667427 tttttgtttggcgtctctttctgaatagacttgctacaaaggacaa 667382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 318
Target Start/End: Original strand, 18295456 - 18295597
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || || ||||||||||||||||||||||||||||| |||||  |||| || |||||  | ||||  ||   ||| | |||||  ||||| ||    
T  18295456 tttttgtttggcggctctttctgaatagacttgctacaaaggataatcttcgcaagaggaatgttctagaggttaccaatgtttcttgtggtgctttatg 18295555  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatgcga 318  Q
    |||||||||||| ||||| || ||| ||||||| ||||||||    
T  18295556 tggtaaggaggaggaaagggatcatttgtttttccaatgcga 18295597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 2894399 - 2894351
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatct 225  Q
    ||||||| || || || |||||||||||||||||||||||||| |||||    
T  2894399 tttttgtttggcggctttttctgaatagacttgctacaaaggataatct 2894351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 177 - 315
Target Start/End: Original strand, 29123499 - 29123637
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| ||  |||| || |||||| || |||| |||| |   | ||||||||| |||||    
T  29123499 tttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtg 29123598  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| |||||||||||| |||||||||||||    
T  29123599 tggtaaggaggaggaaagagaccatttgttttttcaatg 29123637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 8111080 - 8110942
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||| ||| |||| || || ||||||||||   |   ||||| ||| ||||| |||||    
T  8111080 tttttgtatggcgtctctttctgaatagacttgcaacaaaggacaacctgcgcaagaggaacgtctttgaggtttccaatgtgtcttgcgcggccttgtg 8110981  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| ||||| |||||| | |||||||||||    
T  8110980 tggtaaggaggaggaaagggaccatttcttttttcaatg 8110942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 315
Target Start/End: Original strand, 4303262 - 4303400
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||||| ||||||||||||||||||||||||||||||||  |||| || ||| || || | || |||| |   | ||||||||| |||||    
T  4303262 tttttgtttggcgtctttttctgaatagacttgctacaaaggacaatcttcgcaagaggaatatccttcatgctacagattcttcttgtgcggccttgtg 4303361  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| ||||| |||||| |||||||||||||    
T  4303362 tggtaaggaggaggaaagggaccatttgttttttcaatg 4303400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 22340741 - 22340603
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||||||||||| ||||||||||||||||||||||| ||  |||| || |||||| || |||| |||| |   | ||||| ||| |||||    
T  22340741 tttttgtttggcgtctctttctaaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgtggccttgtg 22340642  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| |||||||| ||| |||||||||||||    
T  22340641 tggtaaggaggaggaaagagatcatttgttttttcaatg 22340603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 177 - 321
Target Start/End: Complemental strand, 12915953 - 12915809
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || |||||||||||||||||| ||||||||||| ||||  || ||||||| |||||| ||| ||| |    ||| | ||||||||| |||||    
T  12915953 tttttgtttggcgtctctttctgaatagaattgctacaaagaacaacttgcgcaaaaggaatgtccttgcggctaacaatgtttcttgtgcggccttgtg 12915854  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatgcgacca 321  Q
    |||||||||||| ||||||||| || | ||||||||||| |||||    
T  12915853 tggtaaggaggaggaaagagacaatttattttttcaatgtgacca 12915809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 286
Target Start/End: Original strand, 17826841 - 17826950
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || |||||||||||||||||||||||||||||||| |||||  |||| || |||||| || |||| |||| ||  | ||||||||| |||||    
T  17826841 tttttgtttggcgtctctttctgaatagacttgctacaaaggagaatcttcgcaagaggaatgtccttcaggctacagatgcttcttgtgcggccttgtg 17826940  T
Q  277 tggtaaggag 286  Q
    ||||||||||    
T  17826941 tggtaaggag 17826950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 310
Target Start/End: Complemental strand, 36951363 - 36951230
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    |||||||||| ||||||||||||||||||||||||||||| || ||| || | ||||||||||| |||||  ||||  || ||  ||| ||| |||||||    
T  36951363 tttttgtatggcgtctctttctgaatagacttgctacaaaagataatttgcgtaaaagaaatgtatttgatcccactcttatggcttgcgcgactttgtg 36951264  T
Q  277 tggtaaggaggatgaaagagaccatatgtttttt 310  Q
    ||||||||| || ||||| || ||| ||||||||    
T  36951263 tggtaaggaagaggaaagggatcatttgtttttt 36951230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 177 - 315
Target Start/End: Original strand, 18116442 - 18116580
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || |||||||||||||||||| |||||||||||||||||||  |||| || |||||| ||||||| ||   ||| | |||||  || || ||    
T  18116442 tttttgtttggcgtctctttctgaatagatttgctacaaaggacaatcttcgcaagaggaatgtccttgaggctaccaatgtttcttgtggagccttatg 18116541  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| ||||| || ||| ||||||| |||||    
T  18116542 tggtaaggaggaggaaagggatcatttgtttttccaatg 18116580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 177 - 314
Target Start/End: Original strand, 23158210 - 23158347
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || || ||||||||||||||||||||||||||||| |||||  |||| || |||||  ||||||| ||   ||| | |||||  ||||| ||    
T  23158210 tttttgtttggcggctctttctgaatagacttgctacaaaggataatcttcgcaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatg 23158309  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaat 314  Q
    |||||||||||| ||||| || ||| ||||||| ||||    
T  23158310 tggtaaggaggaggaaagggatcatttgtttttccaat 23158347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 315
Target Start/End: Original strand, 15705634 - 15705758
Alignment:
Q  191 ctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatg 290  Q
    |||| ||||||| ||||||||||||| ||||||||  |||| || ||| || || |||| |||| ||  | ||||||||| ||||||| ||||||||| |    
T  15705634 ctctctctgaatggacttgctacaaatgacaatcttcgcaagaggaatatccttcaggctacagatgcttcttgtgcggccttgtgtgataaggaggagg 15705733  T
Q  291 aaagagaccatatgttttttcaatg 315  Q
    |||| || ||| |||||||||||||    
T  15705734 aaagggatcatttgttttttcaatg 15705758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 3621664 - 3621526
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    |||||||||| ||||| ||||||||||||||||| ||||||||||| ||| | || || || ||  ||||||   |   ||||| ||| ||| | |||||    
T  3621664 tttttgtatggcgtctttttctgaatagacttgcaacaaaggacaacctgcgtaagaggaacgttcttgaggtttccaatgtgtcttgcgcgaccttgtg 3621565  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| |||||||||||| | ||||| |||||    
T  3621564 tggtaaggaggaggaaagagaccatttttttttccaatg 3621526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 24059805 - 24059759
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaat 223  Q
    ||||||| |||||||||||| ||| ||||||||||||||||||||||    
T  24059805 tttttgtttgacgtctctttatgagtagacttgctacaaaggacaat 24059759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 310
Target Start/End: Original strand, 50693814 - 50693947
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||||||||||||||||||||||||||||| || ||  || | |||||||||||  ||||  ||||  ||  |  ||| ||| |||||||    
T  50693814 tttttgtttggcgtctctttctgaatagacttgctacaaaagataacttgcgtaaaagaaatgtaattgatcccactcttacggcttgcgcgactttgtg 50693913  T
Q  277 tggtaaggaggatgaaagagaccatatgtttttt 310  Q
    ||||||||| || ||||| || ||| ||||||||    
T  50693914 tggtaaggaagaggaaagggatcatttgtttttt 50693947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 318
Target Start/End: Complemental strand, 51872847 - 51872706
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || || ||||||||||||||||||||||||||||| |||||  |||| || |||||  ||||||| ||   ||| |  | ||  ||||| |     
T  51872847 tttttgtttggcggctctttctgaatagacttgctacaaaggataatcttcgcaagaggaatgttcttgaggctaccaatgtttcctatggtgctttatt 51872748  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatgcga 318  Q
    |||||||||||| ||||| || ||| ||||||| ||||||||    
T  51872747 tggtaaggaggaggaaagggatcatttgtttttccaatgcga 51872706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 17469184 - 17469247
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgt 240  Q
    ||||||| || | ||||||||||||||||||||||||||| || ||  || |||||||||||||    
T  17469184 tttttgtttggcatctctttctgaatagacttgctacaaaagataacttgcgcaaaagaaatgt 17469247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 315
Target Start/End: Original strand, 36279278 - 36279401
Alignment:
Q  192 tctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatga 291  Q
    |||||||||||||||||||||||||||| |||||  | || || |||||  ||||||| ||   ||| | |||||  ||||| ||||||||||||||  |    
T  36279278 tctttctgaatagacttgctacaaaggataatcttcgtaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggagaa 36279377  T
Q  292 aagagaccatatgttttttcaatg 315  Q
    ||| || ||| ||||||| |||||    
T  36279378 aagggatcatttgtttttccaatg 36279401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 15649220 - 15649265
Alignment:
Q  270 ctttgtgtggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||| |||||||||||||| |||||||||||| | |||||||||||    
T  15649220 ctttatgtggtaaggaggaggaaagagaccatttattttttcaatg 15649265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 177 - 315
Target Start/End: Original strand, 224786 - 224924
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||||| |||||||||||||||||||||||||||||| || | ||||| |||||| ||||||| |    ||| ||||||||||| |||||    
T  224786 tttttgtttggcgtctttttctgaatagacttgctacaaaggacaatttgcgtaaaaggaatgtccttgaggctaacaatgtatattgtgcggccttgtg 224885  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| |||||||||||| | ||||| |||||    
T  224886 tggtaaggaggaggaaagagaccatttatttttccaatg 224924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 11266187 - 11266049
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| ||  |||| || |||||| ||||||| ||   ||| | ||| ||||| |||||    
T  11266187 tttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttgaggctactaatgtttcttgcgcggccttgtg 11266088  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| ||||| |||||| |||||||||||||    
T  11266087 tggtaaggaggaggaaagggaccatttgttttttcaatg 11266049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 27891860 - 27891722
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || | ||||||||||||||||||||| ||||||||||| ||| |||| || || ||| || |||   |   ||||| ||| ||||| |||||    
T  27891860 tttttgtctggcatctctttctgaatagacttgcaacaaaggacaacctgcgcaagaggaacgtccttcaggtttccaatgtgtcttgcgcggccttgtg 27891761  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| ||||| |||||| |||||||||||||    
T  27891760 tggtaaggaggaggaaagggaccatttgttttttcaatg 27891722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 321
Target Start/End: Complemental strand, 29150446 - 29150323
Alignment:
Q  197 ctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatgaaagag 296  Q
    ||||||||||||||||||||||||||  || ||||||| |||||| | ||||| |    ||| | ||||||||| || ||||||||||| || |||||||    
T  29150446 ctgaatagacttgctacaaaggacaacttgcgcaaaaggaatgtcct-gaggctaacaatgtatcttgtgcggccttctgtggtaaggacgaggaaagag 29150348  T
Q  297 accatatgttttttcaatgcgacca 321  Q
    ||||| | ||||||||||| |||||    
T  29150347 accatttattttttcaatgtgacca 29150323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 191 - 311
Target Start/End: Original strand, 5825043 - 5825163
Alignment:
Q  191 ctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatg 290  Q
    |||||||||||| |||||||||||||||| |||||  |||| || |||||| | ||||| ||   ||| | |||||  ||||| |||||||||||||| |    
T  5825043 ctctttctgaatcgacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggagg 5825142  T
Q  291 aaagagaccatatgttttttc 311  Q
    |||| || ||| |||||||||    
T  5825143 aaagggatcatttgttttttc 5825163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 191 - 315
Target Start/End: Original strand, 6678650 - 6678774
Alignment:
Q  191 ctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatg 290  Q
    |||||||||||| |||||||||||||||| |||||  |||| || |||||| | ||||| ||   ||| | |||||  ||||| | |||||||||||| |    
T  6678650 ctctttctgaatcgacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatatggtaaggaggagg 6678749  T
Q  291 aaagagaccatatgttttttcaatg 315  Q
    |||| || ||| |||||||||||||    
T  6678750 aaagtgatcatttgttttttcaatg 6678774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 29322955 - 29322892
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgt 240  Q
    ||||||| || ||||||||||||||||||||||||||||| || ||| || | |||||||||||    
T  29322955 tttttgtttggcgtctctttctgaatagacttgctacaaaagataatttgcgtaaaagaaatgt 29322892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 8896397 - 8896333
Alignment:
Q  188 cgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccac 252  Q
    ||||||||||||||||||||||||||||| || ||  || | |||||||||||| |||| |||||    
T  8896397 cgtctctttctgaatagacttgctacaaaagataacttgcgtaaaagaaatgtcattgatgccac 8896333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 294
Target Start/End: Complemental strand, 38931918 - 38931814
Alignment:
Q  190 tctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggat 289  Q
    ||||||||||||||||||||||||||| || ||  || | |||||||||||| ||||  ||||  || ||  ||| ||| |||||||||||||||| ||     
T  38931918 tctctttctgaatagacttgctacaaaagataacttgcgtaaaagaaatgtcattgatcccactcttatggcttgcgcgactttgtgtggtaaggaagag 38931819  T
Q  290 gaaag 294  Q
    |||||    
T  38931818 gaaag 38931814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 177 - 318
Target Start/End: Original strand, 23571681 - 23571822
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||| |  |||||| ||||||| ||   ||| | |||||  ||||| ||    
T  23571681 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatcttcgcaagacgaatgtccttgaggctaccaatgtttcttgtggtgctttatg 23571780  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatgcga 318  Q
    |||||||||||| ||||| || ||| ||||||| ||||||||    
T  23571781 tggtaaggaggaggaaagggatcatttgtttttccaatgcga 23571822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 8595419 - 8595281
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||  | || || ||| || || |||| |||| ||  | ||||||||| |||||    
T  8595419 tttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgtaagaggaatatccttcaggctacagatgcttcttgtgcggccttgtg 8595320  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    || ||||||||| ||||| |||||| |||||||||||||    
T  8595319 tgctaaggaggaggaaagggaccatttgttttttcaatg 8595281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 42462882 - 42462744
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||| ||||||||||||||||||||||||||||||||||  |||| || |||||| || |||| |||  ||  | ||||||| | ||||     
T  42462882 tttttgtttggcgtttctttctgaatagacttgctacaaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcatcttgtgcgaccttgta 42462783  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    || ||||||||| |||||||| ||| |||||||||||||    
T  42462782 tgataaggaggaggaaagagatcatttgttttttcaatg 42462744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 48547716 - 48547578
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||||||||||||||||||||||| ||||||||||| ||| |||| || || ||| ||||||   |   ||| | ||| ||||| |||||    
T  48547716 tttttgtctggcgtctctttctgaatagacttgcaacaaaggacaacctgcgcaagaggaacgtccttgaggtttccaatgtttcttgcgcggccttgtg 48547617  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| ||||| |||||| |||||||||||||    
T  48547616 tggtaaggaggaggaaagggaccatttgttttttcaatg 48547578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 23603424 - 23603287
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || || ||||||||||||||||||||||| |||||||| ||  |||| || |||||| || || | |||  |   | ||||||||| |||||    
T  23603424 tttttgtttggcgactctttctgaatagacttgctactaaggacaaccttcgcaagaggaatgtccttcag-ctacaaatacttcttgtgcggccttgtg 23603326  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| |||||||| ||| |||||||||||||    
T  23603325 tggtaaggaggaggaaagagatcatctgttttttcaatg 23603287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 321
Target Start/End: Original strand, 39632892 - 39633036
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||||||||||||||||||||||||||||| || ||| ||   |||||||||||| ||||  ||||  || ||  ||| ||| ||| |||    
T  39632892 tttttgtttggcgtctctttctgaatagacttgctacaaaagataatttgcataaaagaaatgtcattgactccactcttatggcttgcgcgacttcgtg 39632991  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatgcgacca 321  Q
    ||||||||| || ||||| || ||| |||||||||| || |||||    
T  39632992 tggtaaggaagaggaaagggatcatctgttttttcattgtgacca 39633036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 16664138 - 16664075
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgt 240  Q
    ||||||| || ||||||||||||||||||||||||||||| || ||| || |||||||||||||    
T  16664138 tttttgtttggcgtctctttctgaatagacttgctacaaaagataatttgcgcaaaagaaatgt 16664075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 318
Target Start/End: Complemental strand, 3514831 - 3514705
Alignment:
Q  192 tctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatga 291  Q
    |||||||||||||||||||||||||||| |||||  |||| || |||||  ||||||| |    ||| | |||||  ||||| |||||||||||||| ||    
T  3514831 tctttctgaatagacttgctacaaaggataatcttcgcaagaggaatgttcttgaggctatcaatgtttcttgtggtgctttatgtggtaaggaggagga 3514732  T
Q  292 aagagaccatatgttttttcaatgcga 318  Q
    ||| || ||| ||||||| ||||||||    
T  3514731 aagggatcatttgtttttccaatgcga 3514705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 42459363 - 42459435
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggc 249  Q
    ||||||| |||||||| |||||||||||| ||||||||||||||||  ||  |||||| |||||| |||||||    
T  42459363 tttttgtttgacgtctttttctgaatagaattgctacaaaggacaacttgcacaaaaggaatgtccttgaggc 42459435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 191 - 315
Target Start/End: Original strand, 53152159 - 53152283
Alignment:
Q  191 ctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatg 290  Q
    ||||||| |||| |||||||||||||||| |||||  |||| || |||||| | ||||| ||   ||| | |||||  ||||| ||||| |||||||| |    
T  53152159 ctctttcagaatcgacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggcaaggaggagg 53152258  T
Q  291 aaagagaccatatgttttttcaatg 315  Q
    ||||||| ||| |||||||||||||    
T  53152259 aaagagatcatttgttttttcaatg 53152283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 10754223 - 10754161
Alignment:
Q  179 tttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtc 241  Q
    ||||| || ||||||||| ||||||||||||||||||| || ||| |||| ||||||||||||    
T  10754223 tttgtttggcgtctctttatgaatagacttgctacaaaagataatttgtgtaaaagaaatgtc 10754161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 319
Target Start/End: Complemental strand, 9819205 - 9819080
Alignment:
Q  194 tttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatgaaa 293  Q
    |||||||||||||||||||||||||| |||||  | || || |||||| ||||||| ||   ||| | |||||  ||||| |||||||||||||| || |    
T  9819205 tttctgaatagacttgctacaaaggataatcttcgtaagaggaatgtccttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaca 9819106  T
Q  294 gagaccatatgttttttcaatgcgac 319  Q
      || ||| ||||||| |||||||||    
T  9819105 aggatcatttgtttttccaatgcgac 9819080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 315
Target Start/End: Original strand, 17153881 - 17154005
Alignment:
Q  191 ctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatg 290  Q
    |||||| |||||||||||||||||||||| |||||  |||| || |||||| | ||||| ||   ||| | |||||  ||||| |||||||| ||||| |    
T  17153881 ctctttatgaatagacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaagaggagg 17153980  T
Q  291 aaagagaccatatgttttttcaatg 315  Q
    |||| || ||| ||||||| |||||    
T  17153981 aaagggatcatttgtttttccaatg 17154005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 52196448 - 52196385
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgt 240  Q
    ||||||| || || |||||||||||||||||||||||||| || ||| || | |||||||||||    
T  52196448 tttttgtttggcgcctctttctgaatagacttgctacaaaagataatttgcgtaaaagaaatgt 52196385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 188 - 315
Target Start/End: Complemental strand, 49369918 - 49369791
Alignment:
Q  188 cgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggagg 287  Q
    ||||||||||||||||||||||||||||||||||||||  |||| || |||||| || ||||  ||| ||  | ||||||||| ||||||||||||||||    
T  49369918 cgtctctttctgaatagacttgctacaaaggacaatcttcgcaagaggaatgtcctttaggctgcagatgcttcttgtgcggccttgtgtggtaaggagg 49369819  T
Q  288 atgaaagagaccatatgttttttcaatg 315  Q
    | ||||| || ||| |||||||||||||    
T  49369818 aggaaagggatcatttgttttttcaatg 49369791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 177 - 315
Target Start/End: Original strand, 41342868 - 41343006
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || |||||||||||||||||| |||||||||||||||||||  |||| || |||||| ||||||| ||   ||| | |||||  || || ||    
T  41342868 tttttgtttggcgtctctttctgaatagatttgctacaaaggacaatcttcgcaagaggaatgtccttgaggctaccaatgtttcttgtggagccttatg 41342967  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| ||||| || ||| ||||||| |||||    
T  41342968 tggtaaggaggaggaaagggatcatttgtttttccaatg 41343006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 191 - 319
Target Start/End: Complemental strand, 10004079 - 10003951
Alignment:
Q  191 ctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatg 290  Q
    ||||||||||||||||||||||||||||| |||||  | || |  |||||||||||||| ||   ||| | |||||  ||| | |||||||||||||| |    
T  10004079 ctctttctgaatagacttgctacaaaggataatcttcgtaagaagaatgtctttgaggctaccaatgtttcttgtggtgctctttgtggtaaggaggagg 10003980  T
Q  291 aaagagaccatatgttttttcaatgcgac 319  Q
    |||| || ||| |||||||  ||||||||    
T  10003979 aaagggatcatttgtttttcgaatgcgac 10003951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 246
Target Start/End: Complemental strand, 37669015 - 37668946
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttga 246  Q
    ||||||| || |||||||||||||||||||||| |||||| || ||| || | |||||||||||| ||||    
T  37669015 tttttgtttggcgtctctttctgaatagacttgatacaaaagataatttgcgtaaaagaaatgtcattga 37668946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 24545117 - 24545165
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatct 225  Q
    ||||||| || |||||||||||||| ||||||||||||||||| |||||    
T  24545117 tttttgtctggcgtctctttctgaacagacttgctacaaaggataatct 24545165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 316
Target Start/End: Complemental strand, 27030114 - 27029975
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || || || ||| ||||||||||||||| |||||| |||||  | || || |||||| ||||||| ||   ||| | |||||  ||| | ||    
T  27030114 tttttgtttggcggctttttttgaatagacttgctataaaggataatcttcgtaagaggaatgtccttgaggctaccaatgtttcttgtggtgctctatg 27030015  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatgc 316  Q
    |||||||||||| |||||||| ||| ||||||| ||||||    
T  27030014 tggtaaggaggaggaaagagatcatttgtttttccaatgc 27029975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 28520899 - 28520948
Alignment:
Q  179 tttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtg 228  Q
    |||||||| |||||||| |||||||||||||||||| |||| ||| ||||    
T  28520899 tttgtatggcgtctcttcctgaatagacttgctacagaggataatttgtg 28520948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 177 - 315
Target Start/End: Original strand, 58456 - 58594
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| ||  |||| || |||||| ||||||| ||   | | | ||||||||| |||||    
T  58456 tttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttgaggctaccaatatttcttgtgcggccttgtg 58555  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| ||||| |||| | |||||||||||||    
T  58556 tggtaaggaggaggaaagggaccgtttgttttttcaatg 58594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 177 - 315
Target Start/End: Original strand, 20705552 - 20705690
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    |||||||||| ||||| ||||||||||||||||| |||||||| |||||| |||| ||||| ||  ||||||   |   ||||  |||||||||||||||    
T  20705552 tttttgtatggcgtctttttctgaatagacttgcaacaaaggataatctgcgcaagagaaacgttcttgaggtttctaatgtggcttgtgcggctttgtg 20705651  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| |||||||||||| ||||||| |||||    
T  20705652 tggtaaggaggaggaaagagaccatttgtttttccaatg 20705690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 177 - 315
Target Start/End: Original strand, 20873596 - 20873734
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    |||||||||| ||||| ||||||||||||||||| |||||||| |||||| |||| ||||| ||  ||||||   |   ||||  |||||||||||||||    
T  20873596 tttttgtatggcgtctttttctgaatagacttgcaacaaaggataatctgcgcaagagaaacgttcttgaggtttctaatgtggcttgtgcggctttgtg 20873695  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| |||||||||||| ||||||| |||||    
T  20873696 tggtaaggaggaggaaagagaccatttgtttttccaatg 20873734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 315
Target Start/End: Original strand, 40891824 - 40891962
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| ||  |||| || |||||| ||||||| ||   ||| | ||||| ||| |||||    
T  40891824 tttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttgaggctacctatgtttcttgtggggccttgtg 40891923  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| ||||  |||||| ||||||| |||||    
T  40891924 tggtaaggaggaggaaatggaccatttgtttttccaatg 40891962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 586946 - 586808
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||||||||| ||||||||||||||||||||||||||||  | ||||| |||||| ||||||| ||   ||| |   ||| ||| || ||    
T  586946 tttttgtttggcgtctctttttgaatagacttgctacaaaggacaatcttcgtaaaaggaatgtccttgaggctaccaatgtttcaagtggggccttatg 586847  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| ||||| || ||| |||||||||||||    
T  586846 tggtaaggaggaggaaagggatcatttgttttttcaatg 586808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 27987627 - 27987675
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatct 225  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||    
T  27987627 tttttgtatggcgtctctttctgaatagacttgctacaaaggataatct 27987675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 319
Target Start/End: Original strand, 36575442 - 36575584
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || || || |||||||||||||||||||||||||| |||||  | || || |||||| ||||||| ||   ||| | |||||  ||| | ||    
T  36575442 tttttgtttggcggctttttctgaatagacttgctacaaaggataatcttcgtaagaggaatgtccttgaggctaccaatgtttcttgtggtgctctatg 36575541  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatgcgac 319  Q
    |||||||||||| ||||| || ||| ||||||| |||||||||    
T  36575542 tggtaaggaggaggaaagggatcatttgtttttccaatgcgac 36575584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 22865808 - 22865871
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgt 240  Q
    ||||||| || ||||||||||||||||||||||||||||| || ||| || | |||||||||||    
T  22865808 tttttgtttggcgtctctttctgaatagacttgctacaaaagataatttgcgtaaaagaaatgt 22865871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 18815464 - 18815502
Alignment:
Q  188 cgtctctttctgaatagacttgctacaaaggacaatctg 226  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  18815464 cgtctctttctgaatagacttgctacaaaggataatctg 18815502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 319
Target Start/End: Complemental strand, 24819859 - 24819717
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || || || |||||||||||||||||||||||||| |||||  | || || || ||| ||||||| ||    || | |||||  ||||| ||    
T  24819859 tttttgtttggcggctttttctgaatagacttgctacaaaggataatcttcgtaagaggaacgtccttgaggctaccaacgtttcttgtggtgctttatg 24819760  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatgcgac 319  Q
    |||||||||||| ||||| || ||| ||||||| |||||||||    
T  24819759 tggtaaggaggaggaaagggatcatttgtttttccaatgcgac 24819717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 318
Target Start/End: Complemental strand, 12121748 - 12121607
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || || ||||||||||||||||||||||||||||| |||||  |||| || |||||  | ||||  ||   ||| | |||||  ||||| ||    
T  12121748 tttttgtttggcggctctttctgaatagacttgctacaaaggataatcttcgcaagaggaatgttctagaggataccaatgtttcttgtggtgctttatg 12121649  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatgcga 318  Q
    |||||||||||| ||||  || ||| ||||||| ||||||||    
T  12121648 tggtaaggaggaggaaatggatcatttgtttttccaatgcga 12121607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 27869060 - 27868999
Alignment:
Q  179 tttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgt 240  Q
    ||||| || |||||||||||||||||||||||||||||||| ||| || ||| ||| |||||    
T  27869060 tttgtttggcgtctctttctgaatagacttgctacaaaggataatttgcgcagaaggaatgt 27868999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 315
Target Start/End: Original strand, 37075664 - 37075788
Alignment:
Q  191 ctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatg 290  Q
    ||||||| |||| |||||||||||||||| |||||  |||| || |||||| | ||||| ||   ||| | |||||  ||||| ||||| |||||||| |    
T  37075664 ctctttcagaatcgacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggcaaggaggagg 37075763  T
Q  291 aaagagaccatatgttttttcaatg 315  Q
    |||| || ||| |||||||||||||    
T  37075764 aaagggatcatttgttttttcaatg 37075788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 5196787 - 5196732
Alignment:
Q  185 tgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgt 240  Q
    ||||| |||||||| |||||||||||||||||||| ||| ||||||| ||| ||||    
T  5196787 tgacgactctttctaaatagacttgctacaaaggataatttgtgcaagagatatgt 5196732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 8457244 - 8457307
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgt 240  Q
    ||||||| || |||||||||||||||||||||| |||||||||  ||||| | || ||||||||    
T  8457244 tttttgtctggcgtctctttctgaatagacttgatacaaaggattatctgcggaagagaaatgt 8457307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 47549008 - 47548969
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaa 216  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  47549008 tttttgtttggcgtctctttctgaatagacttgctacaaa 47548969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 47553451 - 47553412
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaa 216  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  47553451 tttttgtttggcgtctctttctgaatagacttgctacaaa 47553412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 315
Target Start/End: Original strand, 9403205 - 9403323
Alignment:
Q  197 ctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatgaaagag 296  Q
    |||||| |||||||||||||||| |||||  |||| || |||||| | ||||| ||   ||| | |||||  ||||| |||||||||||||| ||||| |    
T  9403205 ctgaatcgacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggaggaaaggg 9403304  T
Q  297 accatatgttttttcaatg 315  Q
    | ||| ||||||| |||||    
T  9403305 atcatttgtttttccaatg 9403323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 38938634 - 38938496
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||||||||||||||||||||| ||||||||||||||||  |||| || ||||||||| |||| |||  ||  | ||||||||| || ||    
T  38938634 tttttgtttggcgtctctttctgaatagacttactacaaaggacaatcttcgcaagaggaatgtctttcaggctacatatgcttcttgtgcggccttatg 38938535  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| ||||| |||||| | |||||||||||    
T  38938534 tggtaaggaggaggaaagggaccatttattttttcaatg 38938496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 179 - 314
Target Start/End: Complemental strand, 22300923 - 22300788
Alignment:
Q  179 tttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtg 278  Q
    |||||| ||||||||||||||||||||| |||||||||||| ||| || |||||||||||||| ||||  | ||  |||||   || ||| | |||||||    
T  22300923 tttgtaagacgtctctttctgaatagacctgctacaaaggataatttgcgcaaaagaaatgtccttgaccctacccttgtggcgtgcgcgaccttgtgtg 22300824  T
Q  279 gtaaggaggatgaaagagaccatatgttttttcaat 314  Q
    ||||| | || |||||||||||| ||||||||||||    
T  22300823 gtaagaaagaggaaagagaccatctgttttttcaat 22300788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 315
Target Start/End: Complemental strand, 30276037 - 30275913
Alignment:
Q  191 ctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatg 290  Q
    ||||||||||||||||| ||||||||||| |||||  |||| || |||||  ||||||| ||   ||| | |||||  ||||| |||||||||||||| |    
T  30276037 ctctttctgaatagactcgctacaaaggataatcttcgcaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggagg 30275938  T
Q  291 aaagagaccatatgttttttcaatg 315  Q
    ||||||| ||| ||||||| |||||    
T  30275937 aaagagatcatttgtttttccaatg 30275913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 318
Target Start/End: Complemental strand, 32350022 - 32349895
Alignment:
Q  191 ctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatg 290  Q
    ||||||||||||||||||||||||||||| | |||  |||| || |||||  ||||||| ||   ||| | |||||  ||||| |||||||||||||| |    
T  32350022 ctctttctgaatagacttgctacaaaggatattcttcgcaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggagg 32349923  T
Q  291 aaagagaccatatgttttttcaatgcga 318  Q
    |||| || ||| ||||||| ||||||||    
T  32349922 aaagggatcatttgtttttccaatgcga 32349895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 188 - 312
Target Start/End: Complemental strand, 1258612 - 1258488
Alignment:
Q  188 cgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggagg 287  Q
    ||||||||||||||||||||||||||||| || ||| |||| |||||||||| | ||||  | ||  || ||  ||| | | ||||||||||||| || |    
T  1258612 cgtctctttctgaatagacttgctacaaaagataatttgtgtaaaagaaatgcccttgaccctactcttatgccttgcgagactttgtgtggtaaagaag 1258513  T
Q  288 atgaaagagaccatatgttttttca 312  Q
    | ||||| |||||| ||||||||||    
T  1258512 aggaaagggaccatctgttttttca 1258488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 315
Target Start/End: Original strand, 27914661 - 27914799
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| |||||  |||||||||||||||||||||||||||| |||||  |||| || |||||| | ||||| ||   ||| | || ||  ||| | ||    
T  27914661 tttttgtttgacggttctttctgaatagacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttatggtgctatatg 27914760  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| ||||| || ||| ||||||| |||||    
T  27914761 tggtaaggaggaggaaagggatcatttgtttttccaatg 27914799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 311
Target Start/End: Complemental strand, 21963556 - 21963436
Alignment:
Q  191 ctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatg 290  Q
    |||||||||||| |||||||||||||||| |||||  |||| || |||||| | ||||| ||   ||| | |||||  ||||| |||||||||||||| |    
T  21963556 ctctttctgaatcgacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggagg 21963457  T
Q  291 aaagagaccatatgttttttc 311  Q
    |||  || ||| |||||||||    
T  21963456 aaaaggatcatttgttttttc 21963436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 293
Target Start/End: Complemental strand, 21964741 - 21964639
Alignment:
Q  191 ctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtgtggtaaggaggatg 290  Q
    |||||||||||| |||||||||||||||| |||||  |||| || |||||| | ||||| ||   ||| | |||||  ||||| |||||||||||||| |    
T  21964741 ctctttctgaatcgacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggagg 21964642  T
Q  291 aaa 293  Q
    |||    
T  21964641 aaa 21964639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 23385005 - 23384867
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || || |||||||||||||||| |||||||||||| |||||  |||| || |||||| | ||||| ||   ||| | |||||  ||||| ||    
T  23385005 tttttgtttggcggctctttctgaatagacatgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatg 23384906  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||| ||||| ||||| || ||| |||| || |||||    
T  23384905 tggtaaagaggaggaaagtgatcatttgttcttccaatg 23384867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 74460 - 74322
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| ||  |||| || |||||| ||||||| ||   ||| | ||||| ||| |||||    
T  74460 tttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttgaggctacctatgtttcttgtggggccttgtg 74361  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatg 315  Q
    |||||||||||| ||||  |||||| ||||||| |||||    
T  74360 tggtaaggaggaggaaatggaccatttgtttttccaatg 74322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 177 - 318
Target Start/End: Original strand, 26077786 - 26077927
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| || || |||||||||||||||||||||||||||||||||||  ||||||| |||||  ||||||| ||   ||| | |||||  ||||| ||    
T  26077786 tttttgtttggcggctctttctgaatagacttgctacaaaggacaatcttcgcaaaaggaatgttcttgaggctaccaatgtttcttgtggtgctttatg 26077885  T
Q  277 tggtaaggaggatgaaagagaccatatgttttttcaatgcga 318  Q
    |||||||||||| ||||| || ||| ||||||| ||||||||    
T  26077886 tggtaaggaggaggaaagggatcatttgtttttccaatgcga 26077927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 29532519 - 29532455
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtc 241  Q
    ||||||| || |||||||||||||||||||||||||||||||||||| |  ||||||| ||||||    
T  29532519 tttttgtctggcgtctctttctgaatagacttgctacaaaggacaatttaagcaaaaggaatgtc 29532455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 10801740 - 10801803
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgt 240  Q
    ||||||| || ||||||||||||||||||||||||||||| || ||| |||| |||||||||||    
T  10801740 tttttgtttggcgtctctttctgaatagacttgctacaaaagataatttgtgtaaaagaaatgt 10801803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 307
Target Start/End: Original strand, 31423301 - 31423431
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgtctttgaggccacagttgtgtattgtgcggctttgtg 276  Q
    ||||||| |||||||||||||||||||||||||| |||||| |||| ||  |||| || || ||| |||| |  ||   ||| | ||| ||||| |||||    
T  31423301 tttttgtctgacgtctctttctgaatagacttgcaacaaagaacaaccttcgcaagaggaacgtccttgaaggtaccaatgtttcttgcgcggccttgtg 31423400  T
Q  277 tggtaaggaggatgaaagagaccatatgttt 307  Q
    |||||||||||| ||||| |||||| |||||    
T  31423401 tggtaaggaggaggaaagggaccatttgttt 31423431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 26390302 - 26390348
Alignment:
Q  177 tttttgtatgacgtctctttctgaatagacttgctacaaaggacaat 223  Q
    ||||||| || |||||||||||||||||||||||||||| |||||||    
T  26390302 tttttgtctggcgtctctttctgaatagacttgctacaacggacaat 26390348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 11225 - 11164
Alignment:
Q  179 tttgtatgacgtctctttctgaatagacttgctacaaaggacaatctgtgcaaaagaaatgt 240  Q
    ||||||||| ||||||| |||||||||||| |||||||||| |||||| | || ||||||||    
T  11225 tttgtatgatgtctcttcctgaatagactttctacaaaggataatctgcggaagagaaatgt 11164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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