View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0249_low_9 (Length: 304)
Name: NF0249_low_9
Description: NF0249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0249_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 10 - 275
Target Start/End: Complemental strand, 41796223 - 41795959
Alignment:
| Q |
10 |
tcataggctaatcgttgcaggtgcgttcaacttcaagtggtttatgtaattatatatgttacatgctaacaatcagttgttatatgcagaaataacatag |
109 |
Q |
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| T |
41796223 |
tcataggctaatcgttgcaggtgcgttcaacttcaagtggtttatgtaattatatatgttacatgctaacaatcagttgttatatgcagaaataacatag |
41796124 |
T |
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| Q |
110 |
ttttaacttttgagatatgctaattaattagctataactagttttatgaatcaagaagctttcctgagtttgaaatgactcctaacaattcctaagctat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41796123 |
ttttaacttttgagatatgctaattaattagctataactagttttatgaatcaagaagctttcctgagtttgaaatgactcctaacaattcctaagctat |
41796024 |
T |
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| Q |
210 |
aataccagttcctcgagccttttagataatgtgtttcggttctttatatcattatatgtatatatg |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41796023 |
aataccagttcctcgagccttttagataatgtgtttcggttctttatatcattat-tgtatatatg |
41795959 |
T |
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