View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0250-INSERTION-1 (Length: 771)

Name: NF0250-INSERTION-1
Description: NF0250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0250-INSERTION-1
NF0250-INSERTION-1
[»] chr1 (1 HSPs)
chr1 (41-765)||(36170780-36171505)


Alignment Details
Target: chr1 (Bit Score: 674; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 41 - 765
Target Start/End: Complemental strand, 36171505 - 36170780
Alignment:
Q  41 cccttgtgcttggtttatcttctcatctttatttagtcttctgaatcagcgatttgatcagtaaccaactgttacacattgctgtcgcgctctcatgctg 140  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36171505 cccttgtgcttggtttatcttctcatctttatttagtcttctcaatcagcgatttgatcagtaaccaactgttacacattgctgtcgcgctctcatgctg 36171406  T
Q  141 tttcaaatctttaaaagaactataacagctaaaaggagnnnnnnnngtggcatcagtttgaaaatgtgtcatttagctgaatctatgatgtatgatcata 240  Q
    ||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36171405 tttcaaatctttaaaagaactataacagctaaaaggagaaaaaaaagtggcatcagtttgaaaatgtgtcatttagctgaatctatgatgtatgatcata 36171306  T
Q  241 caggtagagacttatatgcgcgcaacttgaaattgctcgttcccttctttgactgtgcctcaattaaactactaaagatcgaaaaggtagatcttctctg 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36171305 caggtagagacttatatgcgcgcaacttgaaattgctcgttcccttctttgactgtgcctcaattaaactactaaagatcgaaaaggtagatcttatctg 36171206  T
Q  341 taaattaacagcttgaactacacttttttgcttcaaagaaacagcgccgtacttcactcattatataaattaataatgcaggatgttgagtccgacacaa 440  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36171205 taaattaacagcttgaactacacttttttgcttcaaagaaacagcgccgtacttcactcattatataaattaataatgcaggaagttgagtccgacacaa 36171106  T
Q  441 attttttgcgtgcatcttggaaattaaggtgcttaccctcctcattaagcatgttaatatgtaacatctggatttattttttcaaacactttattatccc 540  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36171105 attttttgcgtgcatcttggaaattaaggtgcttaccctcctcattaagcatgttaatatgtaacatctggatttattttttcaaacactttattatccc 36171006  T
Q  541 tcaatgcaggaccaacttgaaacttccttggaggcctctgattgctattgatggaagcacttcttatgaattgaatgaagatttcaaagtcagaatcaaa 640  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36171005 tcaatgcaggaccaacttgaaacttccttggaggcctctgattgctattgatggaagcacttcttatgaattgaatgaagatttcaaagtcagaatcaaa 36170906  T
Q  641 atgcctctttgcctcaaaactttccactcataatgtgatttgaaatccatggtaactagtggttaaaacatttttgtttgacagatcgttcggcatgttg 740  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  36170905 atgcctctttgcctcaaaactttccactcataatgtgatttgaaatccatgtcaactagtggttaaaacatttttgtttgacagatcgttcggcatgttg 36170806  T
Q  741 agagttggaatg-ttctgcacttgaa 765  Q
    |||||||||||| |||||||||||||    
T  36170805 agagttggaatgtttctgcacttgaa 36170780  T

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