View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0250-INSERTION-4 (Length: 792)
Name: NF0250-INSERTION-4
Description: NF0250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0250-INSERTION-4 |
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Alignment Details
Target: chr6 (Bit Score: 544; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 205 - 791
Target Start/End: Original strand, 2694716 - 2695302
Alignment:
| Q |
205 |
taaagttttggaacatttattgtatgactctcttattaagtagataaggaaacttaacaacttaagtcatgagagaatctcatgccataaatcactcttt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2694716 |
taaagttttggaacatttattgtatgactctcttattaagtagataaggaaacttaacaacttaagtcatgagagaatctcatgccataaatcactcttt |
2694815 |
T |
|
| Q |
305 |
tgaattgaactaccatcatagacttaagccataacattcatatttcataaaacaatgattagttacataattgaaatggcaatattcaacaataaaaaac |
404 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2694816 |
tgaattgaattaccatcatagacttaagccataacattcatatttcataaaacaatgattagttacataattgaagtggcaatattcaacaataaaaaac |
2694915 |
T |
|
| Q |
405 |
taatcagagtccactcataacacttaagaatttcctcatatttcagacatggtttttattatcaagtcttgtcttgtccctctctttgtgacttaaagat |
504 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2694916 |
taatcagagtcctctcataacacttaagaatttcctcatatttcagacatggttttcattatcaagtcttgtcttgtccctctctttgtgacttaaagat |
2695015 |
T |
|
| Q |
505 |
gtagccttttcatctttgttccccattggcacttgagtcttttgcaatttgatgttgaaattgaatgagagcccataatgctataacatatttagctgtt |
604 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2695016 |
gtagcattttcatctttgttccccattggcacttgagtcttttgcaatttgatgttgaaattgaatgagagtccataatgctataacatatttagctgtt |
2695115 |
T |
|
| Q |
605 |
ctcctaattaagagcactatcatactacacaaataatcaggcctagtgttcatcatcaaagtggtccatacccacaatttttaagcaacttctttggtcc |
704 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2695116 |
ctcctaattaagagcactatcatactacacaaataatcaggcctagtgttcatcatcaaagtggtccatacccacaatttttaagcaacttctttggtcc |
2695215 |
T |
|
| Q |
705 |
ccatttctctcctgtttccatcatgtttagtaattgcttttcctattatgtcaattatttaaaaagaaagg-gaaacttttttccttt |
791 |
Q |
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| T |
2695216 |
ccatttctctcctgtttccatcatgtttagtaattgcttttcctattatgtcaattattt-aaaagaaaggcaaaacttttttccttt |
2695302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 2694456 - 2694653
Alignment:
| Q |
8 |
ttaatttggtgtccccacttctatttatatacaacaatgttattcacagcgagagaaatgatcctgaatcgatcacgaacaaaaataggccaataaaaag |
107 |
Q |
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| T |
2694456 |
ttaatttggtgtcctcacttctatttatatacaacaatgttattcacagcgagaggaatgatc-tgaatcgatcacgaacaaaaataggccaataaaaag |
2694554 |
T |
|
| Q |
108 |
caatttttgaacggaaatcatgggaggtgggg-agaaaatgatggaaatcataaaactgtggatgggtggcatacatgccacatgtgtcttgaaacatt |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2694555 |
caatttttgaacggaaatcatgggaggtgggggagaaaatgatggaaatcataaaactgtggatgggtggcatacatgccacatgtgtcttgaaacatt |
2694653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 16317650 - 16317733
Alignment:
| Q |
119 |
cggaaatcatgggaggtgggg-agaaaatgatggaaatcataaaactgtggatgggtggcatacatgccacatgtgtcttgaaa |
201 |
Q |
| |
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||||||||||||||||||||| ||| || |||||||||||||| ||||||| ||||||||||||||||||||||| |||| |
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| T |
16317650 |
cggaaatcatgggaggtgggggagagaaagatggaaatcataatctaatggatggatggcatacatgccacatgtgtctggaaa |
16317733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 6e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 53 - 194
Target Start/End: Original strand, 5013580 - 5013720
Alignment:
| Q |
53 |
acagcgagagaaatgatcctgaatcgatcacgaacaaaaataggccaataaaaagcaatttttgaacggaaatcatgggaggtggggagaaaatgatgga |
152 |
Q |
| |
|
||||||||| ||| |||| || ||||||||||| |||| | ||||||| |||||| |||| || ||||||||||||||||||||||||||| | |||| |
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| T |
5013580 |
acagcgagaagaattatcccgactcgatcacgaatgaaaacaagccaatagaaagcagtttt-gagcggaaatcatgggaggtggggagaaaaaggtgga |
5013678 |
T |
|
| Q |
153 |
aatcataaaactgtggatgggtggcatacatgccacatgtgt |
194 |
Q |
| |
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||||||| | ||||||| |||||||||||||||||||||| |
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| T |
5013679 |
aatcatagactagtggatgagtggcatacatgccacatgtgt |
5013720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 53 - 191
Target Start/End: Original strand, 24255088 - 24255225
Alignment:
| Q |
53 |
acagcgagagaaatgatcctgaatcgatcacgaacaaaaataggccaataaaaagcaatttttgaacggaaatcatgggaggtggggagaaaatgatgga |
152 |
Q |
| |
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||||||||| ||| |||| || || |||||||| |||| | |||||||||||| | |||| || |||||||||||||||||| ||||||| |||||| |
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| T |
24255088 |
acagcgagaagaattatcccgactcaatcacgaatgaaaacaagccaataaaaagtagtttt-gagaggaaatcatgggaggtggagagaaaaagatgga |
24255186 |
T |
|
| Q |
153 |
aatcataaaactgtggatgggtggcatacatgccacatg |
191 |
Q |
| |
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||||||||| ||||| | ||||||||||||||||||| |
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| T |
24255187 |
aatcataaactagtggacgagtggcatacatgccacatg |
24255225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 20614841 - 20614917
Alignment:
| Q |
119 |
cggaaatcatgggaggtggggagaaaatgatggaaatcataaaactgtggatgggtggcatacatgccacatgtgtc |
195 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
20614841 |
cggaaatcatgggaggtggggagaaaaagatggaaatcataaactagtggatgggtgaaatacatgccacatgtgtc |
20614917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 37043428 - 37043510
Alignment:
| Q |
120 |
ggaaatcatgggaggtgggg-agaaaatgatggaaatcataaaactgtggatgggtggcatacatgccacatgtgtcttgaaa |
201 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| |||| |
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|
| T |
37043428 |
ggaaatcatgggaggtgggggagaaaaagatggaaatcataaactaatggatggatggcatacatgccacatgtgtctggaaa |
37043510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 119 - 193
Target Start/End: Original strand, 862016 - 862090
Alignment:
| Q |
119 |
cggaaatcatgggaggtggggagaaaatgatggaaatcataaaactgtggatgggtggcatacatgccacatgtg |
193 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||| ||||||||||||||||| |
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| T |
862016 |
cggaaatcatgggaggtggggagaaaaagatggaaatcataaactagtggatgagtgacatacatgccacatgtg |
862090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 47651164 - 47651246
Alignment:
| Q |
119 |
cggaaatcatgggaggtggggagaaaatgatggaaatcataaaactgtggatgggtggcatacatgccacatgtgtcttgaaa |
201 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| ||||||||||| |||||||| || ||||||||||||||||||| ||||| |
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|
| T |
47651164 |
cggaaatcatgggaggaagggagaaaaagatgaaaatcataaaatagtggatggatgacatacatgccacatgtgtcgtgaaa |
47651246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 34407309 - 34407273
Alignment:
| Q |
165 |
gtggatgggtggcatacatgccacatgtgtcttgaaa |
201 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |
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|
| T |
34407309 |
gtggatgggtggcatacaagccacatgtgtcttgaaa |
34407273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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