View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0250-INSERTION-5 (Length: 754)
Name: NF0250-INSERTION-5
Description: NF0250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0250-INSERTION-5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 647; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 8 - 754
Target Start/End: Original strand, 439819 - 440566
Alignment:
| Q |
8 |
caatcttgagtgtttgcttaaagatagtcaaggaccaatgatgctatcaaacaaagatctcatgctattcacactaatttctctcttttagcttctcaaa |
107 |
Q |
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| T |
439819 |
caatcttgagtgtttgcttaaagatagtcaaggaccaatgatgctatcaaacaaagatctcatgctattcacactaatttctctcttttagcttctcaaa |
439918 |
T |
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| Q |
108 |
ccgattcaattaatagatggaaggaagaaaaactcaactgcactaacaatatcagggccatgttaattattaatcatcaaaaccacttaacagattacaa |
207 |
Q |
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| T |
439919 |
ccaattcaattaacagatggaaggaagaaaaattcaactgcactaacaatatcagggccatgttaattattaatcatcaaaaccacttaacagattacaa |
440018 |
T |
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| Q |
208 |
acgggaaagtatcagaaatatgatgtagaaacctaaacaagtttaaattactcacacctcaaatcttttcaagcagaaaaatacatgatnnnnnnntgca |
307 |
Q |
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| T |
440019 |
acgggaaagtatcagaaatatgatgtagaaatctaaacaagtttaaattactcacacctcaaatcttttcaagcagaaaaatacatgataaaaaa-tgca |
440117 |
T |
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| Q |
308 |
agtgtttgaattctattttagactccacaactcaaagctccaaacaaaaatagttatagctcacattgctcagtttggcaaaataccaagtccgctgttc |
407 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
440118 |
agtgtttgaattctattttagattccacaactcaaagctccaaacaaaaatagttatagctcacattgctcagtttggcaaaataccaagtccactgttc |
440217 |
T |
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| Q |
408 |
gctcttcaaccaaagaatgtgagtatggtgaaaa-agcaagctttcttctgtgcagagtttcactccactagagaataattctgctattcaacaatataa |
506 |
Q |
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| T |
440218 |
gctcttcaaccaaagaatgtgagtatggtgaaaaaagcaagctttcttctgtgcagagtttcactccactagagaataattctgctattcaacaatataa |
440317 |
T |
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| Q |
507 |
acacaaggatggttacaatctactttatcaattaccaaaatcatccacttagcagaagtactgctaacaagatgtgtattgtctatatttctgatattgg |
606 |
Q |
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| T |
440318 |
acacaaggatggttacaatatactttatcaattaccaaaatcatccacttagcagaagtactgctaacaagatgtgtattgtctatatttctgatattag |
440417 |
T |
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| Q |
607 |
caaaagctttatgtggttcttgattcaagatagatcttactggagagagactt-aagttccaaaattcagtatctggtcataaatctgcaatccaatttc |
705 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| || ||||| |||||||||||||| |
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| T |
440418 |
caaaagctttatgtggttcttgattcaagatagatcttaccggagagagacttgaggttccaaaattcagtatctgttcttaaatatgcaatccaatttc |
440517 |
T |
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| Q |
706 |
tcttctcaagcttttattatgtttaaactcaatagctaattgattcatg |
754 |
Q |
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| T |
440518 |
tctactcaagcttttattatgtttagactcaatagctaattgattcatg |
440566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 1e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 103 - 291
Target Start/End: Original strand, 24414328 - 24414515
Alignment:
| Q |
103 |
tcaaaccgattcaattaatagatggaaggaagaaaaactcaa--ctgcactaacaatatcagggccatgttaattattaatcatcaaaaccacttaacag |
200 |
Q |
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|||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24414328 |
tcaaaccgatacaattaatagatggaaggaagaaatcttcaattctgcactaacaatatcagggccatgttaattattagtcatcaaaaccacttaacag |
24414427 |
T |
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| Q |
201 |
attacaaacgggaaagtatcagaaatatgatgtagaaacctaaacaagtttaaattactcacacctcaaatcttttcaagcagaaaaatac |
291 |
Q |
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|| ||||| ||||||||||||||||||||||| ||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24414428 |
atcacaaaggggaaagtatcagaaatatgatgcagaaatcta---aagtttaaattactcgcacctcaaatcttttcaagcagaaaaatac |
24414515 |
T |
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