View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0250_low_1 (Length: 712)

Name: NF0250_low_1
Description: NF0250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0250_low_1
NF0250_low_1
[»] chr1 (1 HSPs)
chr1 (1-712)||(36171600-36172309)


Alignment Details
Target: chr1 (Bit Score: 609; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 1 - 712
Target Start/End: Original strand, 36171600 - 36172309
Alignment:
Q  1 ttgaagaagtgaagttcaatgaatgtcaaacaaagtgagacgattttagataacatgacagaaaagaagctgatattgaataaaaactaatagcaaaaac 100  Q
    |||||||||||||||||  |||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36171600 ttgaagaagtgaagttccctgaatgtcaaacaaagtgagacaactttagataacatgccagaaaagaagctgatattgaataaaaactaatagcaaaaac 36171699  T
Q  101 atgctaaattagagagtaagagcaaccttctgacaaaatatctgctaagacggaaattgaaagataaaacgaggtacctgtaacaaagtaatcattgtca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36171700 atgctaaattagagagtaagagcaaccttctgacaaaatatctgctaagacggaaattgaaagataaaacgaggtacctgtaacaaagtaatcattgtca 36171799  T
Q  201 taatcagacttgatgatgattagaacatcttcgacgcttgaaactgtggagtcattattctgcttctcaatatcgtcgcttaaaacactgcatattaata 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36171800 taatcagacttgatgatgattagaacatcttcgacgcttgaaactgtggagtcattattctgcttctcaatatcgtcgcttaaaacactgcatattaata 36171899  T
Q  301 aattggagtatgattcactcaacaattaataaatgcatatgttgacgattagtgaagaagaatgcatagtaccctgccagttgtttccaacaacatgaac 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36171900 aattggagtatgattcactcaacaattaataaatgcatatgttgacgattagtgaagaagaatgcatagtaccctgccagttgtttccaacaacatgaac 36171999  T
Q  401 cactagtcttacacatacaccagatcagacatgacaccggtagtaattt---aagnnnnnnnngtggttgacacatatggatactagacacgatattgac 497  Q
    ||||||       ||||||||||||||||||||||||||||||||||||   |||        |||||||||||||| ||||||||||||||| | ||||    
T  36172000 cactag-----atcatacaccagatcagacatgacaccggtagtaatttaagaagaaaaaaaagtggttgacacatacggatactagacacgacactgac 36172094  T
Q  498 gcttaaacattggccaatgtcggatgtgtcaagtgtatgacattggcatgtgtttgagtaccaaagacgtcttcactctgaagtgtttgtgctacataaa 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36172095 gcttaaacattggccaatgtcggatgtgtcaagtgtatgacattggcatgtgtttgagtaccaaagacgtcttcactctgaagtgtttgtgctacataaa 36172194  T
Q  598 tggcataaataccttgtttgttggggaggagagaaaagcctcaggagctccggcactccactcactgcaatcttcagaacctgaggggtttcgtttttct 697  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36172195 tggcatagataccttgtttgttggggaggagagaaaagcctcaggagctccgtcactccactcactgcaatcttcagaacctgaggggtttcgtttttct 36172294  T
Q  698 ctcttaccatgttat 712  Q
    |||||||||||||||    
T  36172295 ctcttaccatgttat 36172309  T

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