View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0250_low_2 (Length: 549)

Name: NF0250_low_2
Description: NF0250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0250_low_2
NF0250_low_2
[»] chr6 (21 HSPs)
chr6 (148-434)||(31564838-31565117)
chr6 (237-457)||(33414568-33414788)
chr6 (237-457)||(33258194-33258416)
chr6 (8-234)||(33259583-33259812)
chr6 (262-457)||(33269541-33269740)
chr6 (42-234)||(33416152-33416345)
chr6 (237-457)||(33395052-33395274)
chr6 (235-407)||(33278972-33279139)
chr6 (49-234)||(24631975-24632161)
chr6 (1-89)||(31564755-31564843)
chr6 (19-234)||(33385314-33385521)
chr6 (237-341)||(33293090-33293194)
chr6 (330-446)||(33384040-33384156)
chr6 (8-190)||(9165228-9165418)
chr6 (280-404)||(33280358-33280482)
chr6 (5-79)||(29274300-29274376)
chr6 (400-444)||(33293034-33293078)
chr6 (237-283)||(28873045-28873091)
chr6 (148-189)||(33282241-33282282)
chr6 (148-189)||(33398042-33398083)
chr6 (148-189)||(33408952-33408993)
[»] chr2 (5 HSPs)
chr2 (237-457)||(17447760-17447981)
chr2 (5-86)||(34339039-34339122)
chr2 (38-78)||(3102617-3102657)
chr2 (5-66)||(7103554-7103615)
chr2 (5-66)||(18962109-18962172)
[»] scaffold0428 (6 HSPs)
scaffold0428 (237-457)||(2315-2537)
scaffold0428 (235-407)||(15114-15281)
scaffold0428 (280-404)||(13771-13895)
scaffold0428 (148-234)||(3704-3791)
scaffold0428 (8-104)||(3802-3900)
scaffold0428 (148-189)||(11970-12011)
[»] chr5 (4 HSPs)
chr5 (5-86)||(32059660-32059742)
chr5 (42-86)||(10391269-10391313)
chr5 (47-86)||(29115328-29115367)
chr5 (42-78)||(19113227-19113263)
[»] chr3 (5 HSPs)
chr3 (8-86)||(38462197-38462277)
chr3 (6-79)||(22232749-22232824)
chr3 (13-95)||(3015928-3016011)
chr3 (42-78)||(16790466-16790502)
chr3 (13-78)||(51278236-51278303)
[»] chr1 (4 HSPs)
chr1 (23-76)||(44207697-44207750)
chr1 (30-86)||(11639512-11639568)
chr1 (5-61)||(44422642-44422698)
chr1 (47-79)||(50764489-50764521)
[»] chr8 (5 HSPs)
chr8 (13-81)||(26717178-26717246)
chr8 (23-86)||(26716527-26716590)
chr8 (5-79)||(34788498-34788574)
chr8 (42-78)||(6918955-6918991)
chr8 (8-75)||(8536123-8536191)
[»] chr7 (7 HSPs)
chr7 (5-86)||(3610811-3610894)
chr7 (42-120)||(22388014-22388093)
chr7 (13-78)||(7244626-7244693)
chr7 (42-86)||(23721417-23721461)
chr7 (5-66)||(33894559-33894621)
chr7 (6-79)||(35536030-35536105)
chr7 (42-78)||(45078217-45078253)
[»] chr4 (2 HSPs)
chr4 (23-77)||(32920489-32920543)
chr4 (13-80)||(47970240-47970309)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-116; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 148 - 434
Target Start/End: Original strand, 31564838 - 31565117
Alignment:
Q  148 tatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtcccctttgaattgcagcaactatatcaccaacacttgcatgaaaaggcgc 247  Q
    ||||||| |||||||||||||| ||| || |||||||||||||||||   |||||||| ||||||||||       |||||||||| |||||||||||||    
T  31564838 tatctttaaattcttacataagatttctattttttaaatgtctattccaccccctttggattgcagcaa-------accaacacttacatgaaaaggcgc 31564930  T
Q  248 aagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacat 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  31564931 aagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcggtacatacattcacgattcacgcat 31565030  T
Q  348 tagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgca 434  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31565031 tagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagttggttcatgatcttgcaatgca 31565117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 237 - 457
Target Start/End: Complemental strand, 33414788 - 33414568
Alignment:
Q  237 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcac 336  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||||||| |||||||||||||    
T  33414788 tgaaaaggcgcaagcatatctcaggaaaaagggtctctcatccgctgataagaaatccggaagactagcagctgaaggaagaatcggtacatacattcac 33414689  T
Q  337 gattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaag 436  Q
    ||| |||  ||| ||||||||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||| ||| ||||||||||||||||||    
T  33414688 gatgcacgtattggtgttctaattgaagtgaactgtgaaacggactttgttggcagaagtgagaaattcaaggagttggttgatgatcttgcaatgcaag 33414589  T
Q  437 ttgctgcttgtccacaggttc 457  Q
    |||||||||||||||||||||    
T  33414588 ttgctgcttgtccacaggttc 33414568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 237 - 457
Target Start/End: Complemental strand, 33258416 - 33258194
Alignment:
Q  237 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata-cattca 335  Q
    ||||||| |||||||||| ||||  ||||||||||||||||||||||| ||||||||||| |||| ||  |  ||||||||||||| |||||| || ||     
T  33258416 tgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcg 33258317  T
Q  336 cgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaa 435  Q
    ||||||||||||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| |||||||| ||| | |||||||||||||||    
T  33258316 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaa 33258217  T
Q  436 gttgctgctt-gtccacaggttc 457  Q
    || |||  || ||||||||||||    
T  33258216 gtagctttttggtccacaggttc 33258194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 33259812 - 33259583
Alignment:
Q  8 tataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattagg 105  Q
    ||||||||||||||||||||||| ||||||||  | ||||||||||||||||||||||||| || ||||  |||   ||||||| ||||||| |||||||    
T  33259812 tataggaaaacagtatgacttcaatttatcttttgttataaaaatagcttatacataagcacttatatgtaaagctcttatcttataagcttgaattagg 33259713  T
Q  106 ttatttatccaaactaagtcttagttttctagcctgttcacctatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtc-cccttt 204  Q
     | ||||||||||| | ||||||| |||| |||||  | || |||||||||||||||||||||| ||| || || |||||||||| ||| | | ||||||    
T  33259712 ctgtttatccaaacaaggtcttaggtttccagccttcttacatatctttgaattcttacataagatttatagttgttaaatgtctgttccgccgcccttt 33259613  T
Q  205 gaattgcagcaactatatcaccaacacttg 234  Q
    | ||||||||||||||||||||| ||||||    
T  33259612 ggattgcagcaactatatcaccagcacttg 33259583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 262 - 457
Target Start/End: Complemental strand, 33269740 - 33269541
Alignment:
Q  262 aaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata----cattcacgattcacacattagtgttcta 357  Q
    ||||||||||||||||||||||| ||||| || | ||||| ||  ||||||| |||||||| ||||||    ||||||| || ||  |||  ||||||||    
T  33269740 aaaaagggtctctcatccgctgataagaagtctgcaagactagcagctgaagaaagaatcggtacatatatacattcacaatgcatgcatcggtgttcta 33269641  T
Q  358 attgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttc 457  Q
    ||||||||||| |||||||| |||||| | || |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||    
T  33269640 attgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaagaagttggttgatgatcttgcaatgcaagttgctgcttgtccacaggttc 33269541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 42 - 234
Target Start/End: Complemental strand, 33416345 - 33416152
Alignment:
Q  42 tataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttctagcctg 141  Q
    ||||||||||||||||||||||||| ||| || || || | ||||||| ||||||||||||||||| ||||||||||| | ||| | ||||||||| |||    
T  33416345 tataaaaatagcttatacataagcactttgataatgagcgcttatcttataagctttaattaggttgtttatccaaacaaggtcatggttttctagtctg 33416246  T
Q  142 ttcacctatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatatcaccaacacttg 234  Q
    |||||||||||||||||| |||  ||||  || ||||| |||||||||| ||| | | ||||||| ||||||||||||||||||||| ||||||    
T  33416245 ttcacctatctttgaatttttagttaagacttctaattgttaaatgtctgttccgccgccctttggattgcagcaactatatcaccagcacttg 33416152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 237 - 457
Target Start/End: Complemental strand, 33395274 - 33395052
Alignment:
Q  237 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcac 336  Q
    ||||||||| ||| ||||||| |||| ||||||||||||||| ||||||||||||||||| || | ||  |||||||||||||||| || ||||||| ||    
T  33395274 tgaaaaggcccaatcataccttagaacaaagggtctctcatcagctgacaagaaatccggtaggctagcagctgaaggaagaatcggtaaatacattgac 33395175  T
Q  337 gattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcgg--tagaagtgagaaattcaaggagtttgttcatgatcttgcaatgca 434  Q
    ||| ||| |||   |||||| ||||||||||| |||||||| |||||| | ||   |||||||| | |||||||||||| |||  ||||||| |||||||    
T  33395174 gatgcacgcatctatgttctgattgaagtgaactgtgaaaccgactttgttggcacagaagtgatagattcaaggagttggttgctgatctttcaatgca 33395075  T
Q  435 agttgctgcttgtccacaggttc 457  Q
    |   |||||||||||||||||||    
T  33395074 ataggctgcttgtccacaggttc 33395052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 235 - 407
Target Start/End: Complemental strand, 33279139 - 33278972
Alignment:
Q  235 catgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattc 334  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||||| |    || | || |||||||||| | |||||||||||    
T  33279139 catgaaaaggcgcaagcataccttagaaaaa-gggtctcttatcagctgacaagaaatccggca----agctactaaaggaagaattggtacatacattc 33279045  T
Q  335 acgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 407  Q
    ||||||||||||| ||||||||||||||||| || |||||||| ||||||   || |||||| ||||||||||    
T  33279044 acgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 33278972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 49 - 234
Target Start/End: Original strand, 24631975 - 24632161
Alignment:
Q  49 atagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttctagcctgttcacct 148  Q
    ||||||||| |||||||| || ||||||||| ||||||||| |||  |||||||| |||  |||||||||| | |||||||||||| | | ||||||||     
T  24631975 atagcttatgcataagcacttatatgataagcgtttatcttataatatttaattaagttgcttatccaaacgaggtcttagttttccaacttgttcacca 24632074  T
Q  149 atctttgaattcttacataaggtttgtaatttttaaatgtctattctg-tcccctttgaattgcagcaactatatcaccaacacttg 234  Q
    |||||||||||| |||||||| ||| ||||| |||||||||| ||||| |||  |||| |||||||||||| |||||||| ||||||    
T  24632075 atctttgaattcctacataagatttctaattgttaaatgtctgttctgctcctgtttggattgcagcaactttatcaccagcacttg 24632161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 31564755 - 31564843
Alignment:
Q  1 aatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacataagcaattttatgataagtgtttatctt 89  Q
    |||| ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31564755 aatcacttgtaggaaaacagtgtgacttcattttatcttgttataaaaatagcttatacatatgcaattttatgataagtgtttatctt 31564843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 33385521 - 33385314
Alignment:
Q  19 agtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattaggttatttatcca 116  Q
    |||||||||||||||||||||  | ||||||||| |||||||||| |||| || ||||  ||||| ||||||| |||| ||| |||||| | ||||||      
T  33385521 agtatgacttcattttatcttttgttataaaaattgcttatacatcagcacttatatgtaaagtgcttatcttataagttttcattaggctgtttatc-- 33385424  T
Q  117 aactaagtcttagttttctagcctgttcacctatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagca 215  Q
             |||| |||| |||||||||||||||||||||||||||||||||| ||| ||||  |||||||||| ||| | | ||||||| |||||||||    
T  33385423 ---------ttaggtttccagcctgttcacctatctttgaattcttacataagatttctaatcgttaaatgtctgttccgccgccctttggattgcagca 33385333  T
Q  216 actatatcaccaacacttg 234  Q
    |||||||||||| ||||||    
T  33385332 actatatcaccagcacttg 33385314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 237 - 341
Target Start/End: Complemental strand, 33293194 - 33293090
Alignment:
Q  237 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcac 336  Q
    |||||||| | |||||||||||||||||||||||||||||| |||||| ||||||||| |||||| ||  |||||||||||||| | |||||||||||||    
T  33293194 tgaaaaggtgaaagcatacctcagaaaaaagggtctctcattcgctgataagaaatccagaagactagcagctgaaggaagaattggtacatacattcac 33293095  T
Q  337 gattc 341  Q
    |||||    
T  33293094 gattc 33293090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 330 - 446
Target Start/End: Complemental strand, 33384156 - 33384040
Alignment:
Q  330 cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgca 429  Q
    ||||||| ||||||||||  ||||||||||||||||||| ||| |||| |||||| |||| |||||||||||| | |||||||| ||| |||||||||||    
T  33384156 cattcactattcacacatcggtgttctaattgaagtgaactgtcaaaccgactttgtcggcagaagtgagaaaattaaggagttggttgatgatcttgca 33384057  T
Q  430 atgcaagttgctgcttg 446  Q
    |||||||| ||||||||    
T  33384056 atgcaagtggctgcttg 33384040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 190
Target Start/End: Complemental strand, 9165418 - 9165228
Alignment:
Q  8 tataggaaaacagtatgacttcatttta--tcttgctataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattagg 105  Q
    |||||||||||||||||||||||| |||  | ||| ||||||||||||||||||||||| | || |||| ||||   ||||||| |||||||||||||||    
T  9165418 tataggaaaacagtatgacttcatcttaccttttgttataaaaatagcttatacataagtacttatatg-taagcacttatcttataagctttaattagg 9165320  T
Q  106 ttatttatccaaac-------taagtcttagttttctagcctgttcacctatctttgaattcttacataaggtttgtaatttttaaatgtct 190  Q
       |||||||||||       ||  || ||| |||  |||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||    
T  9165319 gcgtttatccaaacaaggtcatagctcataggtttgcagcctgttcacctatctttgaatttttacataagatttctaattgttaaatgtct 9165228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 404
Target Start/End: Complemental strand, 33280482 - 33280358
Alignment:
Q  280 gctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgg 379  Q
    |||||||||||||||||||||  |   ||||||||| |||||  ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || |    
T  33280482 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactg 33280383  T
Q  380 actttatcggtagaagtgagaaatt 404  Q
    ||||| | || ||||||||||||||    
T  33280382 acttttttggcagaagtgagaaatt 33280358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 29274300 - 29274376
Alignment:
Q  5 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataag 79  Q
    ||||||| ||||||| | |||||| ||||||||||  |||||| |||||||||||||||||||| || |||||||||    
T  29274300 gcttatatgaaaacaatttgactttattttatcttttgctatagaaatagcttatacataagcatttctatgataag 29274376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 444
Target Start/End: Complemental strand, 33293078 - 33293034
Alignment:
Q  400 aaattcaaggagtttgttcatgatcttgcaatgcaagttgctgct 444  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||    
T  33293078 aaattcaaggagttggttaatgatcttgcaatgcaagttgctgct 33293034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 283
Target Start/End: Original strand, 28873045 - 28873091
Alignment:
Q  237 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctg 283  Q
    |||||||||| |||||||||||||| |||||||||||||||| ||||    
T  28873045 tgaaaaggcgtaagcatacctcagataaaagggtctctcatctgctg 28873091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 33282282 - 33282241
Alignment:
Q  148 tatctttgaattcttacataaggtttgtaatttttaaatgtc 189  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  33282282 tatcgttgaattcttacataagatttctaatttttaaatgtc 33282241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 33398083 - 33398042
Alignment:
Q  148 tatctttgaattcttacataaggtttgtaatttttaaatgtc 189  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  33398083 tatcgttgaattcttacataagatttataatttttaaatgtc 33398042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 33408993 - 33408952
Alignment:
Q  148 tatctttgaattcttacataaggtttgtaatttttaaatgtc 189  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  33408993 tatcgttgaattcttacataagatttataatttttaaatgtc 33408952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 6e-60; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 237 - 457
Target Start/End: Original strand, 17447760 - 17447981
Alignment:
Q  237 tgaaaaggcgcaagcatacctcagaaaaaaggg-tctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattca 335  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||  |  |||||||||||||||| ||||||||||||    
T  17447760 tgaaaaggcgcaagcatacctcagaaaaaaggggtctctcatccgctgataagaaatccggaagactggcagctgaaggaagaatcggtacatacattca 17447859  T
Q  336 cgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaa 435  Q
    |||| ||| |||  ||| |||||||||| |||| | |||||| |||||| | || ||||| |||| |||||||||||| ||| |||||||||||||||||    
T  17447860 cgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgttggcagaagggagagattcaaggagttggttgatgatcttgcaatgcaa 17447959  T
Q  436 gttgctgcttgtccacaggttc 457  Q
    || ||||||| |||||||||||    
T  17447960 gtggctgcttttccacaggttc 17447981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 34339122 - 34339039
Alignment:
Q  5 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttat 86  Q
    ||||||| ||||||||| |||||| ||||||||||  |||||| ||| || ||||||||||||| || ||||||||||||||||    
T  34339122 gcttatacgaaaacagtctgactttattttatctttagctatagaaaaagtttatacataagcacttatatgataagtgtttat 34339039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 3102657 - 3102617
Alignment:
Q  38 ttgctataaaaatagcttatacataagcaattttatgataa 78  Q
    ||||||||||||||||||||||||||||| || ||||||||    
T  3102657 ttgctataaaaatagcttatacataagcagttatatgataa 3102617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 7103554 - 7103615
Alignment:
Q  5 gcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacataagca 66  Q
    |||||||  |||||||| |||||| ||||||||||| |||||| |||| || ||||||||||    
T  7103554 gcttatattaaaacagtttgactttattttatcttgttataaatatagtttctacataagca 7103615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 18962109 - 18962172
Alignment:
Q  5 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagca 66  Q
    ||||||| ||||||||| | |||| ||||||||||  | ||||||||||||| |||||||||||    
T  18962109 gcttatatgaaaacagtttaactttattttatcttttgttataaaaatagctaatacataagca 18962172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 95; Significance: 3e-46; HSPs: 6)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 237 - 457
Target Start/End: Complemental strand, 2537 - 2315
Alignment:
Q  237 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata-cattca 335  Q
    ||||||| |||||||||| ||||  ||||||||||||||||||||||| ||||||||||| |||| ||  |  ||||||||||||| |||||| || ||     
T  2537 tgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcg 2438  T
Q  336 cgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaa 435  Q
    ||||||||||||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| |||||||| ||| | |||||||||||||||    
T  2437 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaa 2338  T
Q  436 gttgctgctt-gtccacaggttc 457  Q
    || |||  || ||||||||||||    
T  2337 gtagctttttggtccacaggttc 2315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 235 - 407
Target Start/End: Original strand, 15114 - 15281
Alignment:
Q  235 catgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattc 334  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||||| |    || | || |||||||||| | |||||||||||    
T  15114 catgaaaaggcgcaagcataccttagaaaaa-gggtctcttatcagctgacaagaaatccggca----agctactaaaggaagaattggtacatacattc 15208  T
Q  335 acgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 407  Q
    ||||||||||||| ||||||||||||||||| || |||||||| ||||||   || |||||| ||||||||||    
T  15209 acgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 15281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 404
Target Start/End: Original strand, 13771 - 13895
Alignment:
Q  280 gctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgg 379  Q
    |||||||||||||||||||||  |   ||||||||| |||||  ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || |    
T  13771 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactg 13870  T
Q  380 actttatcggtagaagtgagaaatt 404  Q
    ||||| | || ||||||||||||||    
T  13871 acttttttggcagaagtgagaaatt 13895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 3791 - 3704
Alignment:
Q  148 tatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatatcaccaacacttg 234  Q
    |||||||||||||||||||||| ||| || || |||||||||| ||| | | ||||||| ||||||||||||||||||||| ||||||    
T  3791 tatctttgaattcttacataagatttatagttgttaaatgtctgttccgccgccctttggattgcagcaactatatcaccagcacttg 3704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 3900 - 3802
Alignment:
Q  8 tataggaaaacagtatgacttcattttatc--ttgctataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattag 104  Q
    ||||||||||||||||||||||| ||||||  ||| ||||||||||||||| ||||||||| || ||||  ||| | ||||||| ||||||| ||||||    
T  3900 tataggaaaacagtatgacttcagtttatcttttgttataaaaatagcttacacataagcacttatatgtaaagcgcttatcttataagcttgaattag 3802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 11970 - 12011
Alignment:
Q  148 tatctttgaattcttacataaggtttgtaatttttaaatgtc 189  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  11970 tatcgttgaattcttacataagatttctaatttttaaatgtc 12011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 32059660 - 32059742
Alignment:
Q  5 gcttataggaaaacagtatgacttcattttatctt-gctataaaaatagcttatacataagcaattttatgataagtgtttat 86  Q
    ||||||| ||||||||| |||||| |||||||||| | || ||||| |||||||||||||||| || |||||||||| |||||    
T  32059660 gcttatatgaaaacagtttgactttattttatcttagttacaaaaacagcttatacataagcacttatatgataagtatttat 32059742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 10391313 - 10391269
Alignment:
Q  42 tataaaaatagcttatacataagcaattttatgataagtgtttat 86  Q
    |||||||||||||||||| |||||| || ||||||||||||||||    
T  10391313 tataaaaatagcttatacgtaagcacttatatgataagtgtttat 10391269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 86
Target Start/End: Original strand, 29115328 - 29115367
Alignment:
Q  47 aaatagcttatacataagcaattttatgataagtgtttat 86  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  29115328 aaatagcttatacataagcacttttatgataaatgtttat 29115367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 19113227 - 19113263
Alignment:
Q  42 tataaaaatagcttatacataagcaattttatgataa 78  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  19113227 tataaaaatagtttatacataagcaattatatgataa 19113263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 38462277 - 38462197
Alignment:
Q  8 tataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttat 86  Q
    |||| ||||||||| |||||| ||||||||||  | |||| |||||||||||| |||| || || ||||||||||||||||    
T  38462277 tatatgaaaacagtttgactttattttatcttttggtatagaaatagcttataaataaacacttatatgataagtgtttat 38462197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 22232824 - 22232749
Alignment:
Q  6 cttataggaaaacagtatgacttcattttatc--ttgctataaaaatagcttatacataagcaattttatgataag 79  Q
    |||||| ||||||||| |||||| ||||||||  ||| |||| ||||||||||||||| |||| || |||||||||    
T  22232824 cttatatgaaaacagtttgactttattttatcatttgttatataaatagcttatacatgagcatttatatgataag 22232749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 3015928 - 3016011
Alignment:
Q  13 gaaaacagtatgacttcattttatc-ttgctataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagc 95  Q
    ||||||||| ||||||||||||||| ||| |||| |||||  | ||||||||||| || ||| |||||||||||| || |||||    
T  3015928 gaaaacagtttgacttcattttatctttgttatagaaataattaatacataagcacttatataataagtgtttatgttataagc 3016011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 16790466 - 16790502
Alignment:
Q  42 tataaaaatagcttatacataagcaattttatgataa 78  Q
    ||||||||||||||||||||||||| || ||||||||    
T  16790466 tataaaaatagcttatacataagcacttatatgataa 16790502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 51278236 - 51278303
Alignment:
Q  13 gaaaacagtatgacttcattt--tatcttgctataaaaatagcttatacataagcaattttatgataa 78  Q
    ||||||||| |||||| ||||  ||| ||| |||| ||||||||||||||| ||||||| ||||||||    
T  51278236 gaaaacagtttgactttatttaatattttgttatagaaatagcttatacattagcaattatatgataa 51278303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 44207750 - 44207697
Alignment:
Q  23 tgacttcattttatcttgctataaaaatagcttatacataagcaattttatgat 76  Q
    |||||| ||||||||||||||||||||||||||| | ||||||| || ||||||    
T  44207750 tgactttattttatcttgctataaaaatagcttacatataagcacttgtatgat 44207697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 11639512 - 11639568
Alignment:
Q  30 attttatcttgctataaaaatagcttatacataagcaattttatgataagtgtttat 86  Q
    |||||||||||  |||||||||||||| ||||||| | ||  |||||||||||||||    
T  11639512 attttatcttgtcataaaaatagcttacacataaggacttacatgataagtgtttat 11639568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 44422698 - 44422642
Alignment:
Q  5 gcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacat 61  Q
    ||||||| ||||||||| |||  | |||||||| || ||||||||||||||||||||    
T  44422698 gcttatatgaaaacagtttgagattattttatcatgttataaaaatagcttatacat 44422642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 50764489 - 50764521
Alignment:
Q  47 aaatagcttatacataagcaattttatgataag 79  Q
    ||||||||||||||||||||||| |||||||||    
T  50764489 aaatagcttatacataagcaattgtatgataag 50764521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 26717246 - 26717178
Alignment:
Q  13 gaaaacagtatgacttcattttatcttgctataaaaatagcttatacataagcaattttatgataagtg 81  Q
    ||||| ||| |||||| ||||||||||| ||||||| |||||||| || ||||| || |||||||||||    
T  26717246 gaaaatagtttgactttattttatcttgttataaaattagcttattcagaagcacttatatgataagtg 26717178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 26716527 - 26716590
Alignment:
Q  23 tgacttcattttatcttgctataaaaatagcttatacataagcaattttatgataagtgtttat 86  Q
    |||||| |||| |||||| |||| || ||||||||||||||||| || ||| ||||||||||||    
T  26716527 tgactttatttaatcttgttatagaagtagcttatacataagcacttatataataagtgtttat 26716590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 34788498 - 34788574
Alignment:
Q  5 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataag 79  Q
    ||||||| | ||||||| |||||| ||||||||||  |  ||||||||||||||||| |||||| || |||||||||    
T  34788498 gcttatatggaaacagtttgactttattttatctttggtcataaaaatagcttatacgtaagcatttatatgataag 34788574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 6918991 - 6918955
Alignment:
Q  42 tataaaaatagcttatacataagcaattttatgataa 78  Q
    ||||||||||||||||||||||||| || ||||||||    
T  6918991 tataaaaatagcttatacataagcacttatatgataa 6918955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 8536123 - 8536191
Alignment:
Q  8 tataggaaaacagtatgacttca-ttttatcttgctataaaaatagcttatacataagcaattttatga 75  Q
    |||| ||||||| | |||||||| |||||| ||| |||| |||||||||||||||||||| || |||||    
T  8536123 tatatgaaaacaatttgacttcacttttattttgttatagaaatagcttatacataagcacttatatga 8536191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 3610811 - 3610894
Alignment:
Q  5 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttat 86  Q
    |||||||  |||||||| || ||||||||||||||  | | || |||||||||||||||||||| || ||||| ||||||||||    
T  3610811 gcttataccaaaacagtttgccttcattttatcttttgttgtagaaatagcttatacataagcacttatatgacaagtgtttat 3610894  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 22388014 - 22388093
Alignment:
Q  42 tataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagc-tttaattaggttatttatccaaact 120  Q
    |||| ||||||||||| |||||||| ||  ||||||||||||||| || |||||  ||||||| ||| ||||||||||||    
T  22388014 tatagaaatagcttatccataagcacttaaatgataagtgtttatgttataagcgcttaattaagttgtttatccaaact 22388093  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 7244693 - 7244626
Alignment:
Q  13 gaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataa 78  Q
    ||||||||| ||||||  |||||||||  | |||| |||||||||||||||||||| || ||||||||    
T  7244693 gaaaacagtttgactttcttttatcttttgatatagaaatagcttatacataagcacttatatgataa 7244626  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 23721461 - 23721417
Alignment:
Q  42 tataaaaatagcttatacataagcaattttatgataagtgtttat 86  Q
    |||| |||||| ||||||||||||| ||| |||||||||||||||    
T  23721461 tatagaaatagtttatacataagcactttgatgataagtgtttat 23721417  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 33894621 - 33894559
Alignment:
Q  5 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagca 66  Q
    ||||||| ||||||||| |||||| ||||||||||  | |||| ||||||||||||||||||||    
T  33894621 gcttatatgaaaacagtttgactt-attttatcttttgttatagaaatagcttatacataagca 33894559  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 35536105 - 35536030
Alignment:
Q  6 cttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataag 79  Q
    |||||| ||||||| | |||||| ||||||||||  | |||| |||||||||||||||||||  || |||||||||    
T  35536105 cttatatgaaaacaatttgactttattttatcttatgttatagaaatagcttatacataagcctttatatgataag 35536030  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 45078253 - 45078217
Alignment:
Q  42 tataaaaatagcttatacataagcaattttatgataa 78  Q
    ||||||||||||||||||||||||| || ||||||||    
T  45078253 tataaaaatagcttatacataagcacttatatgataa 45078217  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 32920489 - 32920543
Alignment:
Q  23 tgacttcattttatcttgctataaaaatagcttatacataagcaattttatgata 77  Q
    |||||| ||||||||||| |||||||||||||||| ||||| || || |||||||    
T  32920489 tgactttattttatcttgttataaaaatagcttatccataaacacttatatgata 32920543  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 47970309 - 47970240
Alignment:
Q  13 gaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagt 80  Q
    ||||| ||| |||||||||||||||||  | |||| |||||||||||||||||||| || ||||| ||||    
T  47970309 gaaaatagtttgacttcattttatcttttgttatagaaatagcttatacataagcacttatatgacaagt 47970240  T

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