View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0250_low_5 (Length: 327)

Name: NF0250_low_5
Description: NF0250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0250_low_5
NF0250_low_5
[»] chr6 (5 HSPs)
chr6 (13-235)||(341811-342033)
chr6 (20-235)||(337780-337995)
chr6 (19-206)||(377533-377720)
chr6 (61-210)||(346778-346927)
chr6 (61-210)||(355437-355586)
[»] chr7 (3 HSPs)
chr7 (61-179)||(12164242-12164360)
chr7 (61-179)||(12175767-12175885)
chr7 (52-92)||(1033937-1033977)
[»] chr4 (1 HSPs)
chr4 (58-179)||(3321649-3321770)
[»] chr8 (1 HSPs)
chr8 (61-179)||(36668094-36668212)
[»] chr1 (4 HSPs)
chr1 (27-89)||(12963946-12964008)
chr1 (28-114)||(30368180-30368266)
chr1 (64-92)||(13891606-13891634)
chr1 (52-92)||(13895945-13895985)


Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 341811 - 342033
Alignment:
Q  13 aatatgatattgttttctttgtatgcaatgggaagggatgaaaatatttggggaaaagattgcttggagtttaagccagagaggtggatttctgagagag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  341811 aatatgatattgttttctttgtatgcaatgggaagggatgaaaatatttggggaaaagattgcttggagtttaagccagagaggtggatttctgagagag 341910  T
Q  113 gaggcattgtttatgcgccgtcttacaagttctttagttttaatgctggacctaggacttgtttgggaagagagttggctttcattcaagttaagatggt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  341911 gaggcattgtttatgcgccgtcttacaagttctttagttttaatgctggacctaggacttgtttgggaagagagttggctttcattcaagttaagatggt 342010  T
Q  213 tgctgcttctgttttgtggaact 235  Q
    |||||||||||||||||||||||    
T  342011 tgctgcttctgttttgtggaact 342033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 337780 - 337995
Alignment:
Q  20 tattgttttctttgtatgcaatgggaagggatgaaaatatttggggaaaagattgcttggagtttaagccagagaggtggatttctgagagaggaggcat 119  Q
    |||| |||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  337780 tatttttttctttgtattcaatgggaagggatgcaaatatttggggagaagattgcttggagttcaagccagagaggtggatttctgagagaggaggcat 337879  T
Q  120 tgtttatgcgccgtcttacaagttctttagttttaatgctggacctaggacttgtttgggaagagagttggctttcattcaagttaagatggttgctgct 219  Q
    ||||||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  337880 tgtttatgcaccatcttacaaattctttagttttaatgctggaccaaggacttgtttgggaagagagttggctttgattcaagttaagatgattgctgct 337979  T
Q  220 tctgttttgtggaact 235  Q
    ||| ||||||||||||    
T  337980 tctattttgtggaact 337995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 377533 - 377720
Alignment:
Q  19 atattgttttctttgtatgcaatgggaagggatgaaaatatttggggaaaagattgcttggagtttaagccagagaggtggatttctgagagaggaggca 118  Q
    ||||| |||||||||||| ||||||| ||   |||| | || |||||| |||||||||||||||| ||||||||||| ||||| |||||||||||  |||    
T  377533 atattattttctttgtattcaatggggagatttgaagagatatggggagaagattgcttggagttcaagccagagagatggatatctgagagaggtagca 377632  T
Q  119 ttgtttatgcgccgtcttacaagttctttagttttaatgctggacctaggacttgtttgggaagagagttggctttcattcaagttaa 206  Q
    ||||| |||  |||||||| |||||||||||||||||||||||||| ||||||||||||||||  || ||| | ||||||||||||||    
T  377633 ttgttcatgaaccgtcttataagttctttagttttaatgctggaccaaggacttgtttgggaaaggacttgtccttcattcaagttaa 377720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 61 - 210
Target Start/End: Complemental strand, 346927 - 346778
Alignment:
Q  61 tggggaaaagattgcttggagtttaagccagagaggtggatttctgagagaggaggcattgtttatgcgccgtcttacaagttctttagttttaatgctg 160  Q
    |||||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||| || | || |||||||||||  |||||| ||||||||    
T  346927 tggggaaaagattgtttggagttcaagccagagagatggatatctgagagaggaggcattgttcatacaccatcttacaagtttattagttataatgctg 346828  T
Q  161 gacctaggacttgtttgggaagagagttggctttcattcaagttaagatg 210  Q
    ||||||| |||||||||||||  || ||| | ||||||||| ||||||||    
T  346827 gacctagaacttgtttgggaaaggacttgtccttcattcaaattaagatg 346778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 61 - 210
Target Start/End: Complemental strand, 355586 - 355437
Alignment:
Q  61 tggggaaaagattgcttggagtttaagccagagaggtggatttctgagagaggaggcattgtttatgcgccgtcttacaagttctttagttttaatgctg 160  Q
    |||||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||| || | || |||||||||||  |||||| ||||||||    
T  355586 tggggaaaagattgtttggagttcaagccagagagatggatatctgagagaggaggcattgttcatacaccatcttacaagtttattagttataatgctg 355487  T
Q  161 gacctaggacttgtttgggaagagagttggctttcattcaagttaagatg 210  Q
    ||||||| |||||||||||||  || ||| | ||||||||| ||||||||    
T  355486 gacctagaacttgtttgggaaaggacttgtccttcattcaaattaagatg 355437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 61 - 179
Target Start/End: Complemental strand, 12164360 - 12164242
Alignment:
Q  61 tggggaaaagattgcttggagtttaagccagagaggtggatttctgagagaggaggcattgtttatgcgccgtcttacaagttctttagttttaatgctg 160  Q
    |||||| ||||||||||||| |||||||||||||||||||||||| | | |||||| || |||||||  || |||||||||||| ||  |||||||||||    
T  12164360 tggggagaagattgcttggaatttaagccagagaggtggatttctcaaaaaggagggatagtttatgttccttcttacaagttcattgcttttaatgctg 12164261  T
Q  161 gacctaggacttgtttggg 179  Q
    |||| |||| |||||||||    
T  12164260 gaccaaggagttgtttggg 12164242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 179
Target Start/End: Complemental strand, 12175885 - 12175767
Alignment:
Q  61 tggggaaaagattgcttggagtttaagccagagaggtggatttctgagagaggaggcattgtttatgcgccgtcttacaagttctttagttttaatgctg 160  Q
    |||||| ||||||| ||| | ||||| |||||||||||||||||| ||| |||||| ||  || |||  || |||||||||||| ||  ||| |||||||    
T  12175885 tggggagaagattgtttgaaatttaaaccagagaggtggatttctaagaaaggagggataattcatgttccctcttacaagttcattgctttcaatgctg 12175786  T
Q  161 gacctaggacttgtttggg 179  Q
    |||| |||| |||||||||    
T  12175785 gaccaaggagttgtttggg 12175767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 1033977 - 1033937
Alignment:
Q  52 gaaaatatttggggaaaagattgcttggagtttaagccaga 92  Q
    |||||||| || |||||||||||||||||||| ||||||||    
T  1033977 gaaaatatatgaggaaaagattgcttggagttcaagccaga 1033937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 179
Target Start/End: Original strand, 3321649 - 3321770
Alignment:
Q  58 atttggggaaaagattgcttggagtttaagccagagaggtggatttctgagagaggaggcattgtttatgcgccgtcttacaagttctttagttttaatg 157  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||  ||  || |||  || |||||||||||  ||  ||| ||||    
T  3321649 atttggggagaagattgcttggagtttaaaccagagaggtggatttctaagaaaggagaaataattcatgtaccttcttacaagtttattgctttcaatg 3321748  T
Q  158 ctggacctaggacttgtttggg 179  Q
    ||||||| |||| |||||||||    
T  3321749 ctggaccaaggagttgtttggg 3321770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 179
Target Start/End: Complemental strand, 36668212 - 36668094
Alignment:
Q  61 tggggaaaagattgcttggagtttaagccagagaggtggatttctgagagaggaggcattgtttatgcgccgtcttacaagttctttagttttaatgctg 160  Q
    |||||| ||||||||||||| ||||| |||||||||||| ||||| ||| |||||| |   || |||  || |||||||||||| ||  ||| |||||||    
T  36668212 tggggagaagattgcttggaatttaaaccagagaggtgggtttctaagaaaggagggacaattcatgtaccttcttacaagttcattgctttcaatgctg 36668113  T
Q  161 gacctaggacttgtttggg 179  Q
    |||| |||| | |||||||    
T  36668112 gaccaaggagtcgtttggg 36668094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 12963946 - 12964008
Alignment:
Q  27 ttctttgtatgcaatgggaagggatgaaaatatttggggaaaagattgcttggagtttaagcc 89  Q
    ||||||||||||||||||||||   ||| | || |||||| ||||||||||||| ||||||||    
T  12963946 ttctttgtatgcaatgggaaggatggaacaaatatggggagaagattgcttggaatttaagcc 12964008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 114
Target Start/End: Original strand, 30368180 - 30368266
Alignment:
Q  28 tctttgtatgcaatgggaagggatgaaaatatttggggaaaagattgcttggagtttaagccagagaggtggatttctgagagagga 114  Q
    ||||||||||| |||||||||   ||||| || |||||| |||||||| |||| |||||||| ||||| ||| | || |||||||||    
T  30368180 tctttgtatgctatgggaaggatggaaaaaatatggggagaagattgcatggaatttaagcctgagagatgggtatcagagagagga 30368266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 92
Target Start/End: Complemental strand, 13891634 - 13891606
Alignment:
Q  64 ggaaaagattgcttggagtttaagccaga 92  Q
    |||||||||||||||||||||||||||||    
T  13891634 ggaaaagattgcttggagtttaagccaga 13891606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 13895985 - 13895945
Alignment:
Q  52 gaaaatatttggggaaaagattgcttggagtttaagccaga 92  Q
    ||||| || ||||||||||||||||||||||| ||||||||    
T  13895985 gaaaacatatggggaaaagattgcttggagttcaagccaga 13895945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1451 times since January 2019
Visitors: 2391