View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0253-INSERTION-11 (Length: 223)

Name: NF0253-INSERTION-11
Description: NF0253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0253-INSERTION-11
NF0253-INSERTION-11
[»] chr5 (9 HSPs)
chr5 (2-223)||(7609559-7609780)
chr5 (13-126)||(2611179-2611292)
chr5 (3-66)||(11320155-11320218)
chr5 (17-126)||(14863306-14863415)
chr5 (3-98)||(21052648-21052743)
chr5 (5-66)||(22180278-22180338)
chr5 (13-63)||(12187217-12187266)
chr5 (86-127)||(26139663-26139704)
chr5 (17-66)||(35185286-35185334)
[»] chr3 (18 HSPs)
chr3 (2-125)||(44291249-44291372)
chr3 (3-126)||(43862911-43863034)
chr3 (13-122)||(42163637-42163746)
chr3 (16-66)||(15671150-15671200)
chr3 (3-64)||(43652489-43652550)
chr3 (13-66)||(44041355-44041408)
chr3 (17-126)||(23208179-23208285)
chr3 (5-66)||(17109557-17109618)
chr3 (16-125)||(36258648-36258758)
chr3 (16-66)||(27144029-27144079)
chr3 (16-66)||(35322039-35322088)
chr3 (16-63)||(26613098-26613145)
chr3 (18-56)||(43024099-43024137)
chr3 (16-66)||(49419085-49419135)
chr3 (5-63)||(52992477-52992534)
chr3 (17-66)||(32720555-32720604)
chr3 (17-66)||(47877312-47877361)
chr3 (82-126)||(49419150-49419194)
[»] chr1 (19 HSPs)
chr1 (2-125)||(50127367-50127490)
chr1 (2-127)||(31884479-31884604)
chr1 (13-128)||(26855857-26855971)
chr1 (5-66)||(44109093-44109154)
chr1 (5-66)||(50468829-50468890)
chr1 (13-135)||(30627645-30627767)
chr1 (17-63)||(40391252-40391298)
chr1 (13-126)||(15419681-15419794)
chr1 (2-64)||(48282910-48282972)
chr1 (13-66)||(33827855-33827908)
chr1 (13-66)||(33840057-33840110)
chr1 (16-64)||(20471365-20471413)
chr1 (16-64)||(20560124-20560172)
chr1 (33-126)||(27742524-27742616)
chr1 (16-66)||(19066890-19066940)
chr1 (16-66)||(19114780-19114830)
chr1 (17-66)||(13534531-13534580)
chr1 (83-125)||(48282981-48283023)
chr1 (89-126)||(5178704-5178741)
[»] chr6 (5 HSPs)
chr6 (3-126)||(17506234-17506359)
chr6 (16-66)||(21809839-21809889)
chr6 (2-64)||(4803187-4803250)
chr6 (5-58)||(12838539-12838592)
chr6 (86-126)||(31223164-31223204)
[»] chr8 (10 HSPs)
chr8 (17-126)||(900268-900377)
chr8 (2-123)||(41675690-41675811)
chr8 (11-126)||(37919369-37919484)
chr8 (2-120)||(39534157-39534275)
chr8 (13-125)||(28462574-28462685)
chr8 (17-66)||(20821920-20821969)
chr8 (20-65)||(29795536-29795581)
chr8 (17-66)||(39065568-39065617)
chr8 (16-66)||(14110647-14110696)
chr8 (16-62)||(42654621-42654667)
[»] chr4 (10 HSPs)
chr4 (2-126)||(31647691-31647815)
chr4 (2-62)||(47397639-47397699)
chr4 (13-66)||(38320149-38320202)
chr4 (2-66)||(19147167-19147231)
chr4 (3-66)||(3319270-3319333)
chr4 (2-66)||(54249011-54249075)
chr4 (3-52)||(20542615-20542664)
chr4 (17-66)||(31241986-31242035)
chr4 (89-127)||(25532952-25532990)
chr4 (89-127)||(50086739-50086777)
[»] scaffold0006 (1 HSPs)
scaffold0006 (2-66)||(38831-38895)
[»] chr7 (12 HSPs)
chr7 (17-126)||(45907068-45907177)
chr7 (17-127)||(8117478-8117588)
chr7 (13-66)||(16861707-16861760)
chr7 (3-66)||(41434731-41434794)
chr7 (13-66)||(21798827-21798880)
chr7 (13-66)||(22035762-22035815)
chr7 (5-66)||(36636030-36636091)
chr7 (9-66)||(3624250-3624307)
chr7 (13-66)||(16563500-16563553)
chr7 (13-66)||(16602109-16602162)
chr7 (5-66)||(19689529-19689590)
chr7 (89-125)||(24937802-24937838)
[»] chr2 (8 HSPs)
chr2 (13-124)||(21646508-21646618)
chr2 (2-66)||(23788425-23788489)
chr2 (44-126)||(11610471-11610553)
chr2 (11-125)||(19889716-19889830)
chr2 (2-66)||(37913023-37913087)
chr2 (33-65)||(23760642-23760674)
chr2 (16-62)||(4141673-4141719)
chr2 (17-62)||(32345511-32345556)
[»] scaffold0034 (1 HSPs)
scaffold0034 (13-127)||(22454-22568)
[»] scaffold0886 (1 HSPs)
scaffold0886 (17-66)||(1139-1188)
[»] scaffold0068 (1 HSPs)
scaffold0068 (16-66)||(52042-52092)
[»] scaffold0117 (1 HSPs)
scaffold0117 (17-66)||(16864-16913)
[»] scaffold0078 (1 HSPs)
scaffold0078 (13-58)||(892-937)
[»] scaffold1372 (2 HSPs)
scaffold1372 (33-66)||(1332-1365)
scaffold1372 (2-42)||(1290-1330)


Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 7609559 - 7609780
Alignment:
Q  2 gaatttctattttggaaatataaactgtcattttttatcaagtaataattacattactttttaatnnnnnnnttcttcttttggtgtttaaccaatgccc 101  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||       | |||||||||||| |||||||||||||    
T  7609559 gaatttctgttttggaaatataaactatcattttttatcaagtaataattacattactttttaataaaaacttacttcttttggtgcttaaccaatgccc 7609658  T
Q  102 tgggggcaccggttaacattctcctacaaatatagagagtaccgaaaagccaaattctaggtctaatgaagaatgagagtttgaacacgacaaatgtagg 201  Q
     ||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  7609659 cgggagcactggttaacattctcctacaaatataaagagtaccgaaaagccaaattctaggtctaatggagattgagagtttgaacacgacaaatgtagg 7609758  T
Q  202 gttttactcagcggtatgtaga 223  Q
    |||||| |||||||||||||||    
T  7609759 gttttattcagcggtatgtaga 7609780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 2611179 - 2611292
Alignment:
Q  13 ttggaaatataaactgtcattttttatcaagtaataattacattactttttaatnnnnnnnttcttcttttggtgtttaaccaatgccctgggggcaccg 112  Q
    |||||||||||| |||||| ||||||| ||||||||||||||||||||||||||       | |||| ||||||| |||||||||||||  ||||| | |    
T  2611179 ttggaaatataagctgtcactttttattaagtaataattacattactttttaataaaaacttacttcatttggtgcttaaccaatgccccaggggccctg 2611278  T
Q  113 gttaacattctcct 126  Q
    ||||||||||||||    
T  2611279 gttaacattctcct 2611292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 11320218 - 11320155
Alignment:
Q  3 aatttctattttggaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    ||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11320218 aatttctatcttagaaatataaactgtcactttttatcaagtaataattacattactttttaat 11320155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 14863415 - 14863306
Alignment:
Q  17 aaatataaactgtcattttttatcaagtaataattacattactttttaatnnnnnnnttcttcttttggtgtttaaccaatgccctgggggcaccggtta 116  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||       | ||| |||||||| ||||||||||  | |||||||| | |||    
T  14863415 aaatataaactgtcactttttatcaagtaataattacattaatttttaataaaaacttactttttttggtgcttaaccaatgttccgggggcactgatta 14863316  T
Q  117 acattctcct 126  Q
    ||||||||||    
T  14863315 acattctcct 14863306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 21052648 - 21052743
Alignment:
Q  3 aatttctattttggaaatataaactgtcattttttatcaagtaataattacattactttttaatnnnnnnnttcttcttttggtgtttaaccaatg 98  Q
    |||||| || ||| ||||||||||||||| ||||||||||||||||||||||| | ||||||||       | |||||||||||| ||||||||||    
T  21052648 aatttccatcttgcaaatataaactgtcactttttatcaagtaataattacatgattttttaataaaaacttacttcttttggtgcttaaccaatg 21052743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 22180278 - 22180338
Alignment:
Q  5 tttctattttggaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    ||||||||||| ||||||||||||||| ||||||| || ||||||||| |||| ||||||||    
T  22180278 tttctattttgaaaatataaactgtca-tttttattaaataataattatattattttttaat 22180338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 12187266 - 12187217
Alignment:
Q  13 ttggaaatataaactgtcattttttatcaagtaataattacattacttttt 63  Q
    |||||||||||||| |||| |||||| |||||||||||||||||| |||||    
T  12187266 ttggaaatataaacggtcacttttta-caagtaataattacattatttttt 12187217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 26139704 - 26139663
Alignment:
Q  86 tgtttaaccaatgccctgggggcaccggttaacattctccta 127  Q
    ||||||||||||| | |||| |||||||||||||||||||||    
T  26139704 tgtttaaccaatgtcttgggagcaccggttaacattctccta 26139663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 35185334 - 35185286
Alignment:
Q  17 aaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    ||||||||||||||| |||| ||  |||||||||||||||||||||||||    
T  35185334 aaatataaactgtcactttt-atttagtaataattacattactttttaat 35185286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 125
Target Start/End: Original strand, 44291249 - 44291372
Alignment:
Q  2 gaatttctattttggaaatataaactgtcattttttatcaagtaataattacattactttttaatnnnnnnnttcttcttttggtgtttaaccaatgccc 101  Q
    |||||||| | ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||       | |||||||||||| |||||||||||||    
T  44291249 gaatttctgtcttggaaatataaactgtcactttttattaagtaataattacattactttttaataaatacttacttcttttggtgcttaaccaatgccc 44291348  T
Q  102 tgggggcaccggttaacattctcc 125  Q
     |||||||| ||||||||||||||    
T  44291349 cgggggcactggttaacattctcc 44291372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 126
Target Start/End: Complemental strand, 43863034 - 43862911
Alignment:
Q  3 aatttctattttggaaatataaactgtcattttttatcaagtaataattacattactttttaatnnnnnnnttcttcttttggtgtttaaccaatgccct 102  Q
    ||||||| | ||||||||||||||||||| | ||||| ||||||||||||||||||||||||||       | |||| ||||| | |||||||||||||     
T  43863034 aatttctgtcttggaaatataaactgtcactctttattaagtaataattacattactttttaataaaaacttacttcatttggggcttaaccaatgcccc 43862935  T
Q  103 gggggcaccggttaacattctcct 126  Q
     |||||||||||||||||||||||    
T  43862934 aggggcaccggttaacattctcct 43862911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 42163637 - 42163746
Alignment:
Q  13 ttggaaatataaactgtcattttttatcaagtaataattacattactttttaatnnnnnnnttcttcttttggtgtttaaccaatgccctgggggcaccg 112  Q
    |||||||||||||| |||| ||||||| ||||||||||||||||||||||||||       | |||| |||||||| |||||||||||| || |||||||    
T  42163637 ttggaaatataaaccgtcactttttattaagtaataattacattactttttaataaaaacttacttcatttggtgtgtaaccaatgccccggaggcaccg 42163736  T
Q  113 gttaacattc 122  Q
    ||||||||||    
T  42163737 gttaacattc 42163746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 15671150 - 15671200
Alignment:
Q  16 gaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15671150 gaaatataaactgtcactttttatcaagtaataattacattactttttaat 15671200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 43652489 - 43652550
Alignment:
Q  3 aatttctattttggaaatataaactgtcattttttatcaagtaataattacattacttttta 64  Q
    ||||||||| |||||||||||| ||||||||||||||||  |||||||||||||||||||||    
T  43652489 aatttctatcttggaaatataatctgtcattttttatcagataataattacattacttttta 43652550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 44041355 - 44041408
Alignment:
Q  13 ttggaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    |||| |||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  44041355 ttggtaatataaactgtcactttttattaagtaataattacattactttttaat 44041408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 23208179 - 23208285
Alignment:
Q  17 aaatataaactgtcattttttatcaagtaataattacattactttttaatnnnnnnnttcttcttttggtgtttaaccaatgccctgggggcaccggtta 116  Q
    ||||||||||||||| ||||||| |||||||   ||||||||||||||||       |  ||  |||||| ||||||||||| || ||||||||||||||    
T  23208179 aaatataaactgtcactttttattaagtaat---tacattactttttaataaaaacgtattttatttggtatttaaccaatgtcccgggggcaccggtta 23208275  T
Q  117 acattctcct 126  Q
    ||||||||||    
T  23208276 acattctcct 23208285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 17109557 - 17109618
Alignment:
Q  5 tttctattttggaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    ||||||| ||||||||||||||||| |  |||||| ||||||||||||||| ||||||||||    
T  17109557 tttctatcttggaaatataaactgtaacattttattaagtaataattacataactttttaat 17109618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 36258758 - 36258648
Alignment:
Q  16 gaaatataaactgtcattttttatcaagtaataattacattact-ttttaatnnnnnnnttcttcttttggtgtttaaccaatgccctgggggcaccggt 114  Q
    |||||||||| ||||||||||||| ||||||| ||||||||||| |||||||       | |||  |||||||||||||| ||||||| || ||||  ||    
T  36258758 gaaatataaaatgtcattttttattaagtaatcattacattacttttttaataaaaacttactttatttggtgtttaacccatgccctaggagcactcgt 36258659  T
Q  115 taacattctcc 125  Q
    |||||||||||    
T  36258658 taacattctcc 36258648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 27144079 - 27144029
Alignment:
Q  16 gaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    |||||||||||||| | ||||||| ||||||||||||||||| ||||||||    
T  27144079 gaaatataaactgtgactttttattaagtaataattacattattttttaat 27144029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 35322088 - 35322039
Alignment:
Q  16 gaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    |||||||||||| ||| ||||||| ||||||||||||||||||||||||||    
T  35322088 gaaatataaact-tcactttttattaagtaataattacattactttttaat 35322039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 26613098 - 26613145
Alignment:
Q  16 gaaatataaactgtcattttttatcaagtaataattacattacttttt 63  Q
    |||||||||| ||| |||||| |||||||||||||||||| |||||||    
T  26613098 gaaatataaaatgttatttttaatcaagtaataattacataacttttt 26613145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 43024137 - 43024099
Alignment:
Q  18 aatataaactgtcattttttatcaagtaataattacatt 56  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  43024137 aatataaaccgtcatttttcatcaagtaataattacatt 43024099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 49419085 - 49419135
Alignment:
Q  16 gaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    |||||||||| ||||| ||||||| || |||||||||||| ||||||||||    
T  49419085 gaaatataaattgtcactttttattaactaataattacataactttttaat 49419135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 52992534 - 52992477
Alignment:
Q  5 tttctattttggaaatataaactgtcattttttatcaagtaataattacattacttttt 63  Q
    ||||| ||||| ||||||||||| |||||||||||  |||||||||||||||| |||||    
T  52992534 tttctgttttgaaaatataaactatcattttttat-tagtaataattacattatttttt 52992477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 32720555 - 32720604
Alignment:
Q  17 aaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    ||||||||||||||| | ||||| |||||||||||| |||| ||||||||    
T  32720555 aaatataaactgtcactatttattaagtaataattatattattttttaat 32720604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 47877312 - 47877361
Alignment:
Q  17 aaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    ||||||||||| ||||||||||| || ||||||||||| || ||||||||    
T  47877312 aaatataaactatcattttttattaaataataattacactattttttaat 47877361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 49419150 - 49419194
Alignment:
Q  82 ttggtgtttaaccaatgccctgggggcaccggttaacattctcct 126  Q
    |||||||||||| |||||||| || ||| ||||||||||||||||    
T  49419150 ttggtgtttaacgaatgccctaggagcatcggttaacattctcct 49419194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 125
Target Start/End: Original strand, 50127367 - 50127490
Alignment:
Q  2 gaatttctattttggaaatataaactgtcattttttatcaagtaataattacattactttttaatnnnnnnnttcttcttttggtgtttaaccaatgccc 101  Q
    |||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||       | |||||||||||  |||||||||||||    
T  50127367 gaatttctgtcttggaaatataaactgtcattttttatcgagtaataattacattactttttaataaaaacttacttcttttggtacttaaccaatgccc 50127466  T
Q  102 tgggggcaccggttaacattctcc 125  Q
     |||||||| ||||||||||||||    
T  50127467 cgggggcactggttaacattctcc 50127490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 2 - 127
Target Start/End: Original strand, 31884479 - 31884604
Alignment:
Q  2 gaatttctattttggaaatataaactgtcattttttatcaagtaataattacattactttttaatnnnnnnnttcttcttttggtgtttaaccaatgccc 101  Q
    |||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||       | ||| |||||||| ||||||||||||     
T  31884479 gaatttctatcttggaaatataaactgacattttttatcaaataataattacattactttttaataaaaacttactttttttggtgcttaaccaatgcct 31884578  T
Q  102 tgggggcaccggttaacattctccta 127  Q
      ||||||  ||||||||||||||||    
T  31884579 ccggggcaatggttaacattctccta 31884604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 26855857 - 26855971
Alignment:
Q  13 ttggaaatataaactgtcattttttatcaagtaataattacattactttttaatnnnnnnnttcttcttttggtgtttaaccaatgccctgggggcaccg 112  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| |||||||       | |||  ||||||| ||||||||||||| || |||||||    
T  26855857 ttggaaatataatctgtcactttttatcaagtaataattacattac-ttttaataaaaatttactttatttggtgcttaaccaatgccccggaggcaccg 26855955  T
Q  113 gttaacattctcctac 128  Q
    ||||||||||||||||    
T  26855956 gttaacattctcctac 26855971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 44109093 - 44109154
Alignment:
Q  5 tttctattttggaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    ||||||| ||||||||||||||||||  ||||||| ||||||||||||||||||||||||||    
T  44109093 tttctatcttggaaatataaactgtccctttttattaagtaataattacattactttttaat 44109154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 50468829 - 50468890
Alignment:
Q  5 tttctattttggaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    ||||||| || ||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  50468829 tttctatcttagaaatataacctgtcattttttattaagtaataattacattactttttaat 50468890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 135
Target Start/End: Original strand, 30627645 - 30627767
Alignment:
Q  13 ttggaaatataaactgtcattttttatcaagtaataattacattactttttaatnnnnnnntt-cttcttttggtgtttaaccaatgc-cctgggggcac 110  Q
    |||||||||||| |||||| ||||||| ||||||| ||||||||||||||||||       || ||||| |||||| ||||||||||| |||  ||||||    
T  30627645 ttggaaatataacctgtcactttttataaagtaatgattacattactttttaattaaaaatttacttctcttggtgcttaaccaatgcacct--gggcac 30627742  T
Q  111 cggttaacattctcctacaaatata 135  Q
    ||||||||||||| |||||| ||||    
T  30627743 cggttaacattcttctacaagtata 30627767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 40391252 - 40391298
Alignment:
Q  17 aaatataaactgtcattttttatcaagtaataattacattacttttt 63  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  40391252 aaatataaactgtcactttttatcaagtaataattacattacttttt 40391298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 15419681 - 15419794
Alignment:
Q  13 ttggaaatataaactgtcattttttatcaagtaataattacattactttttaatnnnnnnnttcttcttttggtgtttaaccaatgccctgggggcaccg 112  Q
    ||||||||||||||||| | ||||||| |||||||||||| |||||||||||||       | |||  ||||||||||||||||||| | || | ||| |    
T  15419681 ttggaaatataaactgttactttttattaagtaataattatattactttttaataaaaatttactttatttggtgtttaaccaatgctccggagacacgg 15419780  T
Q  113 gttaacattctcct 126  Q
    ||||| ||||||||    
T  15419781 gttaatattctcct 15419794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 48282910 - 48282972
Alignment:
Q  2 gaatttctattttggaaatataaactgtcattttttatcaagtaataattacattacttttta 64  Q
    |||||||| | ||| |||||||| |||||| ||||||||| ||||||||||||||||||||||    
T  48282910 gaatttctgtcttgaaaatataatctgtcactttttatcaggtaataattacattacttttta 48282972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 33827855 - 33827908
Alignment:
Q  13 ttggaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    ||||||||||||||  ||| ||||||| ||||||||||||||||||||||||||    
T  33827855 ttggaaatataaacgatcactttttattaagtaataattacattactttttaat 33827908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 33840110 - 33840057
Alignment:
Q  13 ttggaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    ||||||||||||||  ||| ||||||| ||||||||||||||||||||||||||    
T  33840110 ttggaaatataaacgatcactttttattaagtaataattacattactttttaat 33840057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 20471365 - 20471413
Alignment:
Q  16 gaaatataaactgtcattttttatcaagtaataattacattacttttta 64  Q
    |||||||||||||||| ||||||||||  ||||||||||||||||||||    
T  20471365 gaaatataaactgtcactttttatcaaaaaataattacattacttttta 20471413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 20560172 - 20560124
Alignment:
Q  16 gaaatataaactgtcattttttatcaagtaataattacattacttttta 64  Q
    |||||||||||||||| ||||||||||  ||||||||||||||||||||    
T  20560172 gaaatataaactgtcactttttatcaaaaaataattacattacttttta 20560124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 126
Target Start/End: Complemental strand, 27742616 - 27742524
Alignment:
Q  33 tttttatcaagtaataattacattactttttaatnnnnnnnttcttcttttggtgtttaaccaatgccctgggggcaccggttaacattctcct 126  Q
    ||||||| ||||||||||||||||||||||||||       | ||||||||| || ||||||||||||| |||  |||| ||||||||||||||    
T  27742616 tttttattaagtaataattacattactttttaataaaaaattacttcttttgttgcttaaccaatgccc-gggaacaccagttaacattctcct 27742524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 19066940 - 19066890
Alignment:
Q  16 gaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    |||||||||| ||||| |||||| ||||||||||||||| |||||||||||    
T  19066940 gaaatataaattgtcactttttaccaagtaataattacaatactttttaat 19066890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 19114830 - 19114780
Alignment:
Q  16 gaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    |||||||||| ||||| |||||| ||||||||||||||| |||||||||||    
T  19114830 gaaatataaattgtcactttttaccaagtaataattacaatactttttaat 19114780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 13534531 - 13534580
Alignment:
Q  17 aaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    ||||||||| |||| ||||||| ||| |||||||||||||||||||||||    
T  13534531 aaatataaattgtctttttttaccaaataataattacattactttttaat 13534580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 48282981 - 48283023
Alignment:
Q  83 tggtgtttaaccaatgccctgggggcaccggttaacattctcc 125  Q
    ||||| ||||||||||||| |||||||| ||||||||||||||    
T  48282981 tggtgcttaaccaatgccccgggggcactggttaacattctcc 48283023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 5178741 - 5178704
Alignment:
Q  89 ttaaccaatgccctgggggcaccggttaacattctcct 126  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  5178741 ttaaccaatgccgtgggggcactggttaacattctcct 5178704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 126
Target Start/End: Complemental strand, 17506359 - 17506234
Alignment:
Q  3 aatttctattttggaaatataaactgtcattttttatcaagtaataattacattactttttaat--nnnnnnnttcttcttttggtgtttaaccaatgcc 100  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||         | ||||||||||||  |||||||||||    
T  17506359 aatttatattttggaaatataaactgtcactttttatcaagtaataattacattactttttaataaaaaaaattacttcttttggtgcctaaccaatgcc 17506260  T
Q  101 ctgggggcaccggttaacattctcct 126  Q
    |  | |||||||||||||||||||||    
T  17506259 cgagaggcaccggttaacattctcct 17506234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 21809839 - 21809889
Alignment:
Q  16 gaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||||||||||    
T  21809839 gaaatataaattgtcactttttatcaagtaataattacgttactttttaat 21809889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 4803250 - 4803187
Alignment:
Q  2 gaatttctattttggaaatataaactgtca-ttttttatcaagtaataattacattacttttta 64  Q
    |||||||| | || |||||||||||||  | |||||||||||||||||||||||||||||||||    
T  4803250 gaatttctgtgtttgaaatataaactgctacttttttatcaagtaataattacattacttttta 4803187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 12838539 - 12838592
Alignment:
Q  5 tttctattttggaaatataaactgtcattttttatcaagtaataattacattac 58  Q
    ||||| |||||||  |||||||||||| |||| ||||| |||||||||||||||    
T  12838539 tttctgttttggagctataaactgtcacttttcatcaaataataattacattac 12838592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 31223204 - 31223164
Alignment:
Q  86 tgtttaaccaatgccctgggggcaccggttaacattctcct 126  Q
    ||||||||||||||||| || |||||||||| |||||||||    
T  31223204 tgtttaaccaatgcccttggagcaccggttagcattctcct 31223164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 900268 - 900377
Alignment:
Q  17 aaatataaactgtcattttttatcaagtaataattacattactttttaatnnnnnnnttcttcttttggtgtttaaccaatgccctgggggcaccggtta 116  Q
    |||| |||||||||||||||||| |||||||||||| |||||||||||||       | |||  ||||||||||||||||||||||||| ||||||||||    
T  900268 aaatttaaactgtcattttttattaagtaataattatattactttttaataaaaacttactttatttggtgtttaaccaatgccctgggagcaccggtta 900367  T
Q  117 acattctcct 126  Q
    ||||||||||    
T  900368 acattctcct 900377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 41675690 - 41675811
Alignment:
Q  2 gaatttctattttggaaatataaactgtcattttttatcaagtaataattacattactttttaatnnnnnnnttcttcttttggtgtttaaccaatgccc 101  Q
    |||||||| ||||| ||||||||||| |||||||||||||||||||||||| ||| |||||||||       | |||||||||||| ||||||||||| |    
T  41675690 gaatttctgttttgaaaatataaactatcattttttatcaagtaataattatatttctttttaataaaaatttacttcttttggtgcttaaccaatgctc 41675789  T
Q  102 tgggggcaccggttaacattct 123  Q
    | |  |||||||||||||||||    
T  41675790 ttgaagcaccggttaacattct 41675811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 126
Target Start/End: Complemental strand, 37919484 - 37919369
Alignment:
Q  11 ttttggaaatataaactgtcattttttatcaagtaataattacattactttttaatnnnnnnnttcttcttttggtgtttaaccaatgccctgggggcac 110  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||       | |||  || |||| ||||||||||| | || |||||    
T  37919484 ttttgaaaatataaactgtcattttttattaagtaataattacattactttttaataaaaatttactttattcggtgcttaaccaatgctccggaggcac 37919385  T
Q  111 cggttaacattctcct 126  Q
    ||||||| ||||||||    
T  37919384 cggttaatattctcct 37919369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 39534157 - 39534275
Alignment:
Q  2 gaatttctattttggaaatataaactgtcattttttatcaagtaataattacattactttttaatnnnnnnnttcttcttttggtgtttaaccaatgccc 101  Q
    |||||||| | ||| |||||||||||||||   ||||||||||||||||||||||||||||||||       | | || ||||||| ||||| || ||||    
T  39534157 gaatttctgtcttgaaaatataaactgtcaccctttatcaagtaataattacattactttttaataaaaatttacctcatttggtgcttaactaacgccc 39534256  T
Q  102 tgggggcaccggttaacat 120  Q
    ||||||||| |||||||||    
T  39534257 tgggggcactggttaacat 39534275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 28462574 - 28462685
Alignment:
Q  13 ttggaaatataaactgtcattttttatcaagtaataattacattactttttaatnnnnnnnttcttcttttggtgtttaaccaatgccctgggggcaccg 112  Q
    ||||||||||||||| ||| ||||||| |||||||||||||||||| |||||||       | |||| |||||||||||||||||| || ||| |||| |    
T  28462574 ttggaaatataaactatcactttttattaagtaataattacattac-ttttaataaaaacttacttcatttggtgtttaaccaatgtcccgggagcactg 28462672  T
Q  113 gttaacattctcc 125  Q
    ||| | |||||||    
T  28462673 gtttatattctcc 28462685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 20821969 - 20821920
Alignment:
Q  17 aaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    ||||||||| ||||| ||||||| ||||||||||||||||||||||||||    
T  20821969 aaatataaattgtcactttttattaagtaataattacattactttttaat 20821920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 29795581 - 29795536
Alignment:
Q  20 tataaactgtcattttttatcaagtaataattacattactttttaa 65  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||    
T  29795581 tataaactgtcactttttatcaattaataattacattactttttaa 29795536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 39065568 - 39065617
Alignment:
Q  17 aaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    ||||||||||||||| |||||||||||||||||| |||||| ||||||||    
T  39065568 aaatataaactgtcactttttatcaagtaataatgacattattttttaat 39065617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 14110647 - 14110696
Alignment:
Q  16 gaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    ||||||||||| |||| ||||||| ||||||||||||||| ||||||||||    
T  14110647 gaaatataaaccgtcactttttat-aagtaataattacataactttttaat 14110696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 42654667 - 42654621
Alignment:
Q  16 gaaatataaactgtcattttttatcaagtaataattacattactttt 62  Q
    |||||||||||| ||||||||||| |||||||||||| ||| |||||    
T  42654667 gaaatataaactatcattttttattaagtaataattatattgctttt 42654621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 9e-26; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 2 - 126
Target Start/End: Complemental strand, 31647815 - 31647691
Alignment:
Q  2 gaatttctattttggaaatataaactgtcattttttatcaagtaataattacattactttttaatnnnnnnnttcttcttttggtgtttaaccaatgccc 101  Q
    |||||||| | || |||||||||||| ||| ||||||||||||||||||||||||||||||||||       |  ||||||||||| ||||||||| ||     
T  31647815 gaatttctgtcttagaaatataaactatcactttttatcaagtaataattacattactttttaataaaaacttatttcttttggtgcttaaccaatacct 31647716  T
Q  102 tgggggcaccggttaacattctcct 126  Q
     ||||||||||||||||||||||||    
T  31647715 cgggggcaccggttaacattctcct 31647691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 47397699 - 47397639
Alignment:
Q  2 gaatttctattttggaaatataaactgtcattttttatcaagtaataattacattactttt 62  Q
    ||||||||||||| |||||||||||||||| |||||||||| ||||||||| |||||||||    
T  47397699 gaatttctattttagaaatataaactgtcactttttatcaaataataattatattactttt 47397639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 38320149 - 38320202
Alignment:
Q  13 ttggaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    ||||||||||||||||||| || |||| ||||||||||||||||||||||||||    
T  38320149 ttggaaatataaactgtcacttcttattaagtaataattacattactttttaat 38320202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 19147167 - 19147231
Alignment:
Q  2 gaatttctattttggaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    |||||||| | ||| ||||||||||||||| |||||||||| ||||||||||||||||| |||||    
T  19147167 gaatttctgtcttgaaaatataaactgtcactttttatcaaataataattacattacttattaat 19147231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 3319270 - 3319333
Alignment:
Q  3 aatttctattttggaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    ||||||||||||  |||||||||||||||||||| ||||| ||||||||| ||||| |||||||    
T  3319270 aatttctattttaaaaatataaactgtcatttttcatcaaataataattatattaccttttaat 3319333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 54249075 - 54249011
Alignment:
Q  2 gaatttctattttggaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    |||||| ||||||  ||||||||||||| |||||||||||||| ||||||||| || ||||||||    
T  54249075 gaatttatattttaaaaatataaactgttattttttatcaagtgataattacaatattttttaat 54249011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 20542615 - 20542664
Alignment:
Q  3 aatttctattttggaaatataaactgtcattttttatcaagtaataatta 52  Q
    ||||||||| ||| ||||||||||||||| ||||||||||||| ||||||    
T  20542615 aatttctatcttgtaaatataaactgtcactttttatcaagtagtaatta 20542664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 31241986 - 31242035
Alignment:
Q  17 aaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    |||||||||| |||| ||||||| || |||||||||||||||||||||||    
T  31241986 aaatataaacggtcactttttattaaataataattacattactttttaat 31242035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 127
Target Start/End: Complemental strand, 25532990 - 25532952
Alignment:
Q  89 ttaaccaatgccctgggggcaccggttaacattctccta 127  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  25532990 ttaaccagtgccctgggggcaccggttaacattttccta 25532952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 50086739 - 50086777
Alignment:
Q  89 ttaaccaatgccctgggggcaccggttaacattctccta 127  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  50086739 ttaaccaatgccccgggggcactggttaacattctccta 50086777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 38895 - 38831
Alignment:
Q  2 gaatttctattttggaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38895 gaatttatatcttggaaatataaactgtcattttttatcaagtaataattacattactttttaat 38831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 45907068 - 45907177
Alignment:
Q  17 aaatataaactgtcattttttatcaagtaataattacattactttttaatnnnnnnnttcttcttttggtgtttaaccaatgccctgggggcaccggtta 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||       | ||||||||  || |||||||||  || |||| ||| |||||    
T  45907068 aaatataaactgtcactttttatcaagtaataattacattactttttaataaaaacttacttctttttatgcttaaccaatatcccggggacactggtta 45907167  T
Q  117 acattctcct 126  Q
    ||||||||||    
T  45907168 acattctcct 45907177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 8117478 - 8117588
Alignment:
Q  17 aaatataaactgtcattttttatcaagtaataattacattactttttaatnnnnnnnttcttcttttggtgtttaaccaatgccctgggggcaccggtta 116  Q
    ||||||||| ||| ||||||||| || |||||||||||||||||||||||       | |||| ||| | ||||||||||||||| |||| ||| | |||    
T  8117478 aaatataaattgttattttttattaaataataattacattactttttaataaaaacttacttcatttagcgtttaaccaatgccccggggtcactgatta 8117577  T
Q  117 acattctccta 127  Q
    |||||||||||    
T  8117578 acattctccta 8117588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 16861760 - 16861707
Alignment:
Q  13 ttggaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    ||||||||||||||||||||||||||| || || ||||||||||||||||||||    
T  16861760 ttggaaatataaactgtcattttttattaaatattaattacattactttttaat 16861707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 41434794 - 41434731
Alignment:
Q  3 aatttctattttggaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    ||||||| | || |||||||||||||||| |||||||||| |||||||||||||| ||||||||    
T  41434794 aatttctgtcttagaaatataaactgtcactttttatcaaataataattacattattttttaat 41434731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 21798880 - 21798827
Alignment:
Q  13 ttggaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    |||||| ||||||||||||||||| || |||||||||||||||||||| |||||    
T  21798880 ttggaattataaactgtcatttttcattaagtaataattacattacttcttaat 21798827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 22035815 - 22035762
Alignment:
Q  13 ttggaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    ||||||||||||||||||| ||||||  ||||||||||||||||| ||||||||    
T  22035815 ttggaaatataaactgtcactttttaataagtaataattacattattttttaat 22035762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 36636030 - 36636091
Alignment:
Q  5 tttctattttggaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    ||||||| ||||| |||||||| ||||  |||||| ||||||||||||||||| ||||||||    
T  36636030 tttctatcttggagatataaacggtcaccttttattaagtaataattacattattttttaat 36636091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 3624250 - 3624307
Alignment:
Q  9 tattttggaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    |||||||||||||||| || | |||||||||||| |||| ||||||  ||||||||||    
T  3624250 tattttggaaatataagcttttattttttatcaaataattattacaccactttttaat 3624307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 16563500 - 16563553
Alignment:
Q  13 ttggaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    ||||||||||||||| | |||||| |  || |||||||||||||||||||||||    
T  16563500 ttggaaatataaactattatttttcagtaaataataattacattactttttaat 16563553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 16602162 - 16602109
Alignment:
Q  13 ttggaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    ||||||||||||||| | |||||| |  || |||||||||||||||||||||||    
T  16602162 ttggaaatataaactattatttttcagtaaataataattacattactttttaat 16602109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 19689590 - 19689529
Alignment:
Q  5 tttctattttggaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    ||||||| ||| ||||||||||| ||| ||  ||| || |||||||||||||||||||||||    
T  19689590 tttctatcttgtaaatataaactatcacttcgtattaaataataattacattactttttaat 19689529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 24937838 - 24937802
Alignment:
Q  89 ttaaccaatgccctgggggcaccggttaacattctcc 125  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  24937838 ttaaccaatgccctgagggcaccgtttaacattctcc 24937802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 21646508 - 21646618
Alignment:
Q  13 ttggaaatataaactgtcattttttatcaagtaataattacattactttttaatnnnnnnnttcttcttttggtgtttaaccaatgccctgggggcaccg 112  Q
    ||||||||||||| ||||| |||| || ||||||||||||||||||||||||||       | |||| |||||||||||||||||||||   |||||| |    
T  21646508 ttggaaatataaagtgtcactttt-attaagtaataattacattactttttaatgaaaacttacttcatttggtgtttaaccaatgcccctagggcactg 21646606  T
Q  113 gttaacattctc 124  Q
    ||||||||||||    
T  21646607 gttaacattctc 21646618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 23788425 - 23788489
Alignment:
Q  2 gaatttctattttggaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    |||||| ||||||| ||||||||| | ||||||||||| ||||||||||||||||||||||||||    
T  23788425 gaatttatattttgaaaatataaattatcattttttattaagtaataattacattactttttaat 23788489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 11610471 - 11610553
Alignment:
Q  44 taataattacattactttttaatnnnnnnnttcttcttttggtgtttaaccaatgccctgggggcaccggttaacattctcct 126  Q
    |||||||| ||||||||||||||       | |||| ||||||| ||||||||||||| |||||||| |||||||||||||||    
T  11610471 taataattgcattactttttaatgaaaacttacttcatttggtgcttaaccaatgccccgggggcactggttaacattctcct 11610553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 19889830 - 19889716
Alignment:
Q  11 ttttggaaatataaactgtcattttttatcaagtaataattacattactttttaatnnnnnnnttcttcttttggtgtttaaccaatgccctgggggcac 110  Q
    ||||||||||||||  |||||  |||||| ||||||||||||||||||||||||||       | |||| |||| || ||||||||||||| |  |||||    
T  19889830 ttttggaaatataatatgtcaccttttattaagtaataattacattactttttaatgaaaacttacttcatttgatgcttaaccaatgccccgaaggcac 19889731  T
Q  111 cggttaacattctcc 125  Q
     | ||||||||||||    
T  19889730 tgattaacattctcc 19889716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 37913023 - 37913087
Alignment:
Q  2 gaatttctattttggaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    |||||| ||| ||| |||||||||| |||| |||||||||||||||||| |||||| ||||||||    
T  37913023 gaatttttatcttgaaaatataaaccgtcactttttatcaagtaataatcacattaatttttaat 37913087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 23760642 - 23760674
Alignment:
Q  33 tttttatcaagtaataattacattactttttaa 65  Q
    |||||||||||||||||||||||||||||||||    
T  23760642 tttttatcaagtaataattacattactttttaa 23760674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 4141719 - 4141673
Alignment:
Q  16 gaaatataaactgtcattttttatcaagtaataattacattactttt 62  Q
    ||||||||||| |||| |||||||  |||||||||||||||||||||    
T  4141719 gaaatataaaccgtcactttttattcagtaataattacattactttt 4141673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 32345556 - 32345511
Alignment:
Q  17 aaatataaactgtcattttttatcaagtaataattacattactttt 62  Q
    ||||||||||||||||||||||| || ||||||||| |||| ||||    
T  32345556 aaatataaactgtcattttttattaaataataattatattattttt 32345511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 22454 - 22568
Alignment:
Q  13 ttggaaatataaactgtcattttttatcaagtaataattacattactttttaatnnnnnnnttcttcttttggtgtttaaccaatgccctgggggcaccg 112  Q
    |||||||||||||| |||| |||||||||| |||||||||||||||| ||||||       | |||||||||||| ||||||||||||  ||||| ||      
T  22454 ttggaaatataaaccgtcactttttatcaaataataattacattactctttaataaaaacttacttcttttggtgcttaaccaatgcctcgggggtactt 22553  T
Q  113 gttaacattctccta 127  Q
     ||||||||||||||    
T  22554 tttaacattctccta 22568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 1139 - 1188
Alignment:
Q  17 aaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  1139 aaatataaactgtcactttttattaagtaataattacattactttttaat 1188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 52092 - 52042
Alignment:
Q  16 gaaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    |||||||||| |||||||||||| ||| |||||||||||||||||||||||    
T  52092 gaaatataaattgtcattttttaccaaataataattacattactttttaat 52042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 16864 - 16913
Alignment:
Q  17 aaatataaactgtcattttttatcaagtaataattacattactttttaat 66  Q
    ||||||||||||||| |||||||||||||||||||| || | ||||||||    
T  16864 aaatataaactgtcactttttatcaagtaataattatataattttttaat 16913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 892 - 937
Alignment:
Q  13 ttggaaatataaactgtcattttttatcaagtaataattacattac 58  Q
    ||||||||||||||| ||||||||||| || |||||||||||||||    
T  892 ttggaaatataaactatcattttttattaaataataattacattac 937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1372 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold1372
Description:

Target: scaffold1372; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 1332 - 1365
Alignment:
Q  33 tttttatcaagtaataattacattactttttaat 66  Q
    |||||||||||||||||||||||| |||||||||    
T  1332 tttttatcaagtaataattacatttctttttaat 1365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1372; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 1290 - 1330
Alignment:
Q  2 gaatttctattttggaaatataaactgtcattttttatcaa 42  Q
    |||||||| | ||||||||||||||||||| ||||||||||    
T  1290 gaatttctgtcttggaaatataaactgtcactttttatcaa 1330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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