View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0253-INSERTION-4 (Length: 576)
Name: NF0253-INSERTION-4
Description: NF0253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0253-INSERTION-4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 8 - 576
Target Start/End: Complemental strand, 517939 - 517371
Alignment:
| Q |
8 |
caatgttctattctcaaaaggtacaagaagagcttctgaaggtaaaagcattgctcttgcatttggattacaatgatgatttgtgccatcatcatcacaa |
107 |
Q |
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| T |
517939 |
caatgttctattctcgaaaggtacaagaagagcttctgaaggtaaaagcattgctcttgcatttggattacaatgacgatttgtgtcatcatcatcacaa |
517840 |
T |
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| Q |
108 |
ccacatgcacacgtgttgcatggcacaatagaatcattgtaataagaagagaaagagacacaacaacgtgtactcctatgttttggtttggttatattac |
207 |
Q |
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| T |
517839 |
ccacatgcacacgtgttgcatggcacaatagaatcattgtaataagaagagaaagagacacagcaacgtgtactcctatgttttggtttggttatattac |
517740 |
T |
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| Q |
208 |
aaactatttgccaactaacaatagaataagttgtagcatcaagtcctctagggtctggaaattttgtcggttcaactttcaatggtggtccacaagtata |
307 |
Q |
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| T |
517739 |
aaactatttgccaactaacaatagaataagttgtagcatcaagtcctctagggtctggaaattttgtcggttcaactttcaatggtggtccacaagtata |
517640 |
T |
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| Q |
308 |
agctgagttaagaactcccattattttccatcttgctggtgggaaaatagattttttatccaaatcaggtggacatttaaaaacttgcatttgaaaaatt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
517639 |
agctgagttaagaactcccattattttccatcttgctggtgggaaaatagattttttatccaaatcaggtggacatttaaaaacttgcatttgaaaaatt |
517540 |
T |
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| Q |
408 |
gacttggattggcttggatccataagtattggtaaaagagttccatttctacaacaaaatggtattttaccaatttcagtgtcattatatttttctggag |
507 |
Q |
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| T |
517539 |
gacttggattggcttggatccataagtattggtaaaagagttccatttctacaacaaaatggtattttaccaatttcagtgtcattatatttttctggag |
517440 |
T |
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| Q |
508 |
gcaaatcacttattacaggannnnnnngacaattaattactttggagaaatccatgtccttgtagtatt |
576 |
Q |
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| T |
517439 |
gcaaatcacttattacaggatttttttgacaattaattactttggagaaatccatgtccttgtagtatt |
517371 |
T |
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