View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0253-INSERTION-5 (Length: 389)
Name: NF0253-INSERTION-5
Description: NF0253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0253-INSERTION-5 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 8 - 189
Target Start/End: Original strand, 28598844 - 28599025
Alignment:
| Q |
8 |
aaactacccgaagccacggaagaggtcatgaatttcatcatgcgtgcttttgaattagcaaaaaatcttgaactagaactacctaacataaccaaccacc |
107 |
Q |
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| T |
28598844 |
aaacttcccgaagccatggaagaggtcatgaatttcatcatgcgtgcttttgaattagcaaaaaatcttgaactagaactacctaacataaccaaccacc |
28598943 |
T |
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| Q |
108 |
ctgaaatgctattctcatccattgatgatgtagaaaaagcatttaatactgccaaagaaagagtaataatgatgttgtcctc |
189 |
Q |
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| T |
28598944 |
ctgaaatgctattctcatccattgatgaagtagaaaaagcatttaatgctgccaaagaaagagtaatgatgatgttgtcctc |
28599025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 219 - 387
Target Start/End: Original strand, 28599052 - 28599220
Alignment:
| Q |
219 |
aaccttctaattcctttgctcaaattccgtctcatgatgttttcatgcaaaaaactcaacatgttcaaattggtggaagtggaagtgcagtttcaatgca |
318 |
Q |
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| T |
28599052 |
aaccttctaattcctttgctcaaattccgtctcatgatgttttcatgcaaaaaactcaacatgctcaaattggtggaagtggaagtgcaatttcaatgca |
28599151 |
T |
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| Q |
319 |
tgcacattcaatggatcaattgcttctaatgcaacacccttttgatgtgagtgttctacttgagaataa |
387 |
Q |
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| T |
28599152 |
tgcacattcaatggatcaattgcttctaattcaacacccttttgatgtgagtgttctacttgagaataa |
28599220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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