View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0253-INSERTION-6 (Length: 732)

Name: NF0253-INSERTION-6
Description: NF0253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0253-INSERTION-6
NF0253-INSERTION-6
[»] chr3 (1 HSPs)
chr3 (8-732)||(47838585-47839309)


Alignment Details
Target: chr3 (Bit Score: 709; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 709; E-Value: 0
Query Start/End: Original strand, 8 - 732
Target Start/End: Original strand, 47838585 - 47839309
Alignment:
Q  8 attgtcataccactttatgaatcatttcatgaaaatatagtagctagaagtggatatcttgttaacttgtgcatcaagttatctcataagctgtatatca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47838585 attgtcataccactttatgaatcatttcatgaaaatatagtagctagaagtggatatcttgttaacttgtgcatcaagttatctcataagctgtatatca 47838684  T
Q  108 catttgtctttgttcaagaaatcttttcttggagctccttaatatattttagaacacgaatacattctaaagtcctgcaacgagagattatgattataaa 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  47838685 catttgtctttgttcaagaaatcttttcttggagctccttaatatattttagaacacgaatacattctaaagtcctgcaatgagagattatgattataaa 47838784  T
Q  208 attcagctacattgattacattttaagatctttttggcaactatagaaattagaaaagttgcatggcttgattcgtaagtagaatctgattatttggttt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47838785 attcagctacattgattacattttaagatctttttggcaactatagaaattagaaaagttgcatggcttgattcgtaagtagaatctgattatttggttt 47838884  T
Q  308 gttatgtgacactctctgcattaaaatcacccaagtgaagaagatttaaaagagtgatccaaaataaataagttgattaagtaacagtgttttagttgtt 407  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47838885 gttatgtgacactctctgcattaaaattacccaagtgaagaggatttaaaagagtgatccaaaataaataagttgattaagtaacagtgttttagttgtt 47838984  T
Q  408 tctagtgtaatactatacttttaatgcattgattgtattaatatacgaacgtattgaccgaatatagttgatcatccaaagagtttgaccgaatatagac 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47838985 tctagtgtaatactatacttttaatgcattgattgtattaatatacgaatgtattgaccgaatatagttgatcatccaaagagtttgaccgaatatagac 47839084  T
Q  508 cagtttgtctagcgagctgcatgtataagattataccgaatatagaccagtttgtactagcaaacagatcgaagggagtcttagggaaattgatttctaa 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47839085 cagtttgtctagcgagctgcatgtataagattataccgaatatagaccagtttgtactagcaaacagatcgaagggagtcttagggaaattgatttctaa 47839184  T
Q  608 aaatcaaacaatttttgttcaaggtagagatttagtagacggtgtggtagtactagtagtcaatgaaattattgatttggcaaaaagtagaaaagtgttt 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47839185 aaatcaaacaatttttgttcaaggtagagatttagtagacggtgtggtagtactagtagtcaatgaaattattgatttggcaaaaagtagaaaagtgttt 47839284  T
Q  708 gcttctgaaagtcgactttgaaaga 732  Q
    |||||||||||||||||||||||||    
T  47839285 gcttctgaaagtcgactttgaaaga 47839309  T

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