View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0253-INSERTION-9 (Length: 593)
Name: NF0253-INSERTION-9
Description: NF0253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0253-INSERTION-9 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 8 - 364
Target Start/End: Complemental strand, 21830667 - 21830311
Alignment:
| Q |
8 |
attattaatggttctattcatgttaacttgacgaatgaccttaacataatagactccagcaactaaaagaacaacaaaagcagcagcaaagataatgcca |
107 |
Q |
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| T |
21830667 |
attattaatggttctattcatgttaacttgacgaatgaccttaacataatagactccagcaactaaaagaacaacaaaagcagcagcaaagataatgcca |
21830568 |
T |
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| Q |
108 |
gccacggcaccagctccaatttgtttcccattcttctgtgattctttgttttcatatttctgattagcttctacttgagttgccataggaagtgatgaac |
207 |
Q |
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| T |
21830567 |
gccacagcaccagctccaatttgtttcccacttttctgtgatgctttgttttcatatttctgattagcttctacttgagctgccataggaagtgatgaac |
21830468 |
T |
|
| Q |
208 |
attttgatgtagtacaagagtttttggtctcgtaagttcgtgcattgggatgaaagaagagatatgctgatggtggaaaagctatagggttttcgtaaac |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
21830467 |
attttgatgtagtacaagagtttttggtctcgtaagttcgtgcattgggatgaaagaagagatatgctgatggtggaaaagctatagggttttcataaac |
21830368 |
T |
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| Q |
308 |
aagtccatgaggtgctctttcttgagatgttgctatagagaggagtgataaggaagt |
364 |
Q |
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| T |
21830367 |
aagtccatgaggtgctctttcttgagatgttgctatagagagaagtgataaggaagt |
21830311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 8 - 262
Target Start/End: Complemental strand, 11791873 - 11791621
Alignment:
| Q |
8 |
attattaatggttctattcatgttaacttgacgaatgaccttaacataatagactccagcaactaaaagaacaacaaaagcagcagcaaagataatgcca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||| ||| |
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| T |
11791873 |
attattaatggttctattcatgttaacttgacgaatgaccttaacataatagactccaacaactaaaagaacaacaaaagcaacaccaaagataattcca |
11791774 |
T |
|
| Q |
108 |
gccacggcaccagctccaatttgtttcccattcttctgtgattctttgttttcatatttctgattagcttctacttgagttgccataggaagtgatgaac |
207 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||| |||| ||| |||||||||||| ||||||| |
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| T |
11791773 |
gccacgtcaccagctccaatttgtttcccattcttctatgatgcttagttttcatatttctgattagct--tactagagctgccataggaagggatgaac |
11791676 |
T |
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| Q |
208 |
attttgatgtagtacaagagtttttggtctcgtaagttcgtgcattgggatgaaa |
262 |
Q |
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|||| |||||||| ||||||||||||||||| |||||||||||| |||||||| |
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| T |
11791675 |
atttggatgtagtgcaagagtttttggtctcaggagttcgtgcatttggatgaaa |
11791621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 401 - 593
Target Start/End: Complemental strand, 21830292 - 21830094
Alignment:
| Q |
401 |
gttaaagggactcatgtttgttattttggatttgtgtaaataatttagaagaa---aatgtgtagcttttgggtgagaagttgtggtgtttgccttgccc |
497 |
Q |
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||||||||||||||||||||||||||||| ||| | || |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21830292 |
gttaaagggactcatgtttgttattttgggtttttatatataacttagaagaagaaaatgtgtagcttttgggtgagaagttgtggtgtttgccttgccc |
21830193 |
T |
|
| Q |
498 |
ttttataatg-tttcaggtcttgaggaagtatttattggtccttcaactttgaat---ttatatcttgtgaaaagggtaacttgattctgtctgtcttta |
593 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
21830192 |
ttttataatgttttcaggtcttgaggaagtatttattggtccttcaac-ttgaatttattatatcttgtgaaaagggtaacttgattctgtctgtcttta |
21830094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 8 - 262
Target Start/End: Complemental strand, 45630694 - 45630441
Alignment:
| Q |
8 |
attattaatggttctattcatgttaacttgacgaatgaccttaacataatagactccagcaactaaaagaacaacaaaagcagcagcaaagataatgcca |
107 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||| ||| |
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| T |
45630694 |
attattaatggttctattcatgttaacttggcgaatgaccttaacataatagactccaacaactaaaagaacaacaaaagcaacaccaaagataattcca |
45630595 |
T |
|
| Q |
108 |
gccacggcaccagctccaatttgtttcccattcttctgtgattctttgttttcatatttctgattagcttctacttgagttgccataggaagtgatgaac |
207 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||| | | |||||||||||||||||||||| |||| ||| |||||||||||| ||||||| |
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| T |
45630594 |
gccacgtcaccagctccaatttgtttcccattcttctatgatgcatagttttcatatttctgattagct--tactagagctgccataggaagggatgaac |
45630497 |
T |
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| Q |
208 |
attttgatgtagtacaagag-tttttggtctcgtaagttcgtgcattgggatgaaa |
262 |
Q |
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|||| |||||||| |||||| ||||||||||| |||||||||||| |||||||| |
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| T |
45630496 |
atttggatgtagtgcaagagttttttggtctcaggagttcgtgcatttggatgaaa |
45630441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 251 - 337
Target Start/End: Original strand, 40188390 - 40188476
Alignment:
| Q |
251 |
attgggatgaaagaagagatatgctgatggtggaaaagctatagggttttcgtaaacaagtccatgaggtgctctttcttgagatgt |
337 |
Q |
| |
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||||||||||||||| |||||||||||||| ||| ||| ||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
40188390 |
attgggatgaaagaattcatatgctgatggtgaaaatgcttcaggattttggtaaacaagtccatgaggtgctctttcttgagatgt |
40188476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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