View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0253_high_10 (Length: 335)
Name: NF0253_high_10
Description: NF0253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0253_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 30 - 325
Target Start/End: Complemental strand, 14210270 - 14209978
Alignment:
| Q |
30 |
ttatatgttaaaaagtaatatgaatgagcagctgtgaagccaaaatactttaaaaaatggagaaatattagtgtgtgacatgtgtgatgtgttcaatatt |
129 |
Q |
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| T |
14210270 |
ttatatgttaaaaagtaatatgaatgagcagctgtgaagccaaaatactttaaaaaatggagaaatattagtgtgtgacatgtgtgatgtgttcaatatt |
14210171 |
T |
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| Q |
130 |
tccggatacttatttgtataaagtatccggtaatctttttaattctctttgaaaatattttcaccgatacttctaagatacatgtaggatacttcttacc |
229 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14210170 |
tccggatactta---gtataaagtatccggtaatctttttaattctctttgaaaatattttcaccgatacttctaagatacatctaggatacttcttacc |
14210074 |
T |
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| Q |
230 |
aactaaaaacacagttgtttgtcagatacaatacattttcgatatgtcttactaactaaagacactaagtcatatgttttttgcgacgcgttcatc |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
14210073 |
aactaaaaacacagttgtttgtcagatacaatacattttcgatatgtcttactaactaaagacactaagtcatatgttttttgcgtcgcgttcatc |
14209978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 291
Target Start/End: Complemental strand, 5995787 - 5995675
Alignment:
| Q |
179 |
tgaaaatattttcaccgatacttctaagatacatgtaggatacttcttaccaactaaaaacacagttgtttgtcagatacaatacattttcgatatgtct |
278 |
Q |
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|||||||||||||| |||| |||| | |||||| | ||||||||||||||||||| |||||||||| | |||||||| |||||||| ||||| | |
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| T |
5995787 |
tgaaaatattttcattgatatttctcaaatacattttcaatacttcttaccaactaaagacacagttgtcttccagatacactacattttttatatgctt |
5995688 |
T |
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| Q |
279 |
tactaactaaaga |
291 |
Q |
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| T |
5995687 |
tactaactaaaga |
5995675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 246
Target Start/End: Original strand, 28792242 - 28792338
Alignment:
| Q |
149 |
aaagtatccggtaatctttttaattctctttgaaaatattttcaccgatacttctaagatacatgtaggatacttcttaccaactaaaaacacagttg |
246 |
Q |
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||||||||| |||| |||||||||| | | ||||||||| ||||||||||||| | |||||| | ||| |||||| ||||||||||||||||||| |
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| T |
28792242 |
aaagtatccaataattattttaattctatctaaaaatatttccaccgatacttctcaaatacatct-tgatgcttcttcccaactaaaaacacagttg |
28792338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 294
Target Start/End: Complemental strand, 5797901 - 5797758
Alignment:
| Q |
150 |
aagtatccggtaatctttttaattctctttgaaaatattttcaccgatacttctaagatacatgtaggatacttcttaccaactaaaaacacagttgttt |
249 |
Q |
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|||||||| |||| |||| |||||| |||| |||||||| ||||||||||||| ||||| || | ||||| || ||||||||||| |||| |||| | |
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| T |
5797901 |
aagtatccaataattttttaaattctttttggaaatatttccaccgatacttctcagatatatcttcgatacctcctaccaactaaagacacgcttgtct |
5797802 |
T |
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| Q |
250 |
gtcagatacaatacattttcgatatgtcttactaactaaagacac |
294 |
Q |
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| T |
5797801 |
tcctgatacgataca-tctcgataggtcttattaactaacgacac |
5797758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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