View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0253_high_18 (Length: 254)
Name: NF0253_high_18
Description: NF0253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0253_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 32 - 235
Target Start/End: Original strand, 10887417 - 10887620
Alignment:
| Q |
32 |
agactcgaggtgcttagtgcagcgtactgtgaggagctggtagaaatattttcgaaggatgaaatacctgcagaaggagaaataaaagagtttcctcaac |
131 |
Q |
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| T |
10887417 |
agactcaaggtgcttagtgcaacgaactgtgaggagctggtagaaatattttcgaaggatgaaatacctgcagaaggagaaataaaagagtttcctcaac |
10887516 |
T |
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| Q |
132 |
tgaccacaatgcgcctaataaaattgccaaggctcaaatacttttatcctcgtctacataagctagaatggcctgcactaaaagagctgtatgcacatca |
231 |
Q |
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| T |
10887517 |
tgaccacaatgcacctaataaacttgccaaggctcaaatacttttatcctcgtctacataagctagaatggcctgcactaaaagagctgcatgcacatcc |
10887616 |
T |
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| Q |
232 |
ttgt |
235 |
Q |
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|||| |
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| T |
10887617 |
ttgt |
10887620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 69 - 204
Target Start/End: Original strand, 10855296 - 10855437
Alignment:
| Q |
69 |
tggtagaaatattttcgaaggatgaaatacctgcagaaggagaaataaaaga------gtttcctcaactgaccacaatgcgcctaataaaattgccaag |
162 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| || |||||| ||||||| |||||| || || | |||||||||||||| |
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| T |
10855296 |
tggtagaaatattttcagaggatgaaatacctgcagaaggagcaacaaaagagttaatgtttccttctctgacctcattgtacataataaaattgccagc |
10855395 |
T |
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| Q |
163 |
gctcaaatacttttatcctcgtctacataagctagaatggcc |
204 |
Q |
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| T |
10855396 |
gctcaaatacttttatcgtggtttacataagctagaatggcc |
10855437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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