View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0253_high_19 (Length: 251)
Name: NF0253_high_19
Description: NF0253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0253_high_19
[» ] scaffold0129 (1 HSPs)
[» ] scaffold0060 (1 HSPs)
[» ] scaffold0140 (1 HSPs)
Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 42827703 - 42827949
Alignment:
Q
1
ctcccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattat
100
Q
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
T
42827703
ctcccttgaaccaaaactcatctccttcaacaatgtcttctaattccattactcaatcatcatccaatgagttacctatgtgcggttgcaacaaaattat
42827802
T
Q
101
gagaatgttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaatactttgttgttctc
200
Q
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
T
42827803
gagaatgttcatatccaattcacttgacaaccctaaaaggagatattggaaatacacaacctatatggtgagtttgctgttgtaatactttgttgttctc
42827902
T
Q
201
tta-tttttcacattttaattagctgaatatatttgttttcatctca
246
Q
||| ||||||||||||||||||||| ||||| |||||||||||||||
T
42827903
ttattttttcacattttaattagctaaatatgtttgttttcatctca
42827949
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 3 - 197
Target Start/End: Complemental strand, 22059845 - 22059651
Alignment:
Q
3
cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatga
102
Q
|||| ||||||||| | |||| |||||||||||||||||| |||| |||||| ||||||| |||| |||||||||||| ||||||||||||| ||||
T
22059845
ccctagaaccaaaaactttctctttcaacaatgtcttctaattccaaaactcaaccatcatcaaatgggttacctatgtgtggttgcaacaaaatcatga
22059746
T
Q
103
gaatgttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaatactttgttgtt
197
Q
||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
T
22059745
gaatgttcatatccaattcacatgaaaaccctaaaaggagatactggaaatgcccaacctatatggtgagtttgctgttgtaatactttgttgtt
22059651
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 162
Target Start/End: Complemental strand, 31559203 - 31559070
Alignment:
Q
29
aacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatgagaatgttcatatccaattcacttgaa
128
Q
||||||||||||| | |||||| ||||||||||||| | |||||| ||||| || ||||||||||||| ||||| |||||||| ||||||| | | |
T
31559203
aacaatgtcttctcattccatttctcaatcatcatcaattgagttgcctatatgtggttgcaacaaaataatgaggatgttcatctccaatttatattac
31559104
T
Q
129
aaccctaaaaggagatattggaaatacccaacct
162
Q
|||||||||| |||||||||||||| ||||||||
T
31559103
aaccctaaaacgagatattggaaatgcccaacct
31559070
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 44820126 - 44820183
Alignment:
Q
3
cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcat
60
Q
||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||||
T
44820126
cccttgaaccaaaacccatatccttcaacaatttattctaattccattactcaatcat
44820183
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 10344850 - 10344793
Alignment:
Q
3
cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcat
60
Q
||||||||||||||||||| |||||||||||| | |||||| || |||||||||||||
T
10344850
cccttgaaccaaaacccatatccttcaacaatttattctaattctattactcaatcat
10344793
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 42930135 - 42930080
Alignment:
Q
3
cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatc
58
Q
||||||||||||||||||| |||||||||||| | |||||| | ||||||||||||
T
42930135
cccttgaaccaaaacccatatccttcaacaatttattctaatttcattactcaatc
42930080
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 5694991 - 5695052
Alignment:
Q
12
caaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagtt
73
Q
|||| ||||| ||||||||||||||||||| | |||||| |||| |||||||| ||||||||
T
5694991
caaaccccatttccttcaacaatgtcttctcattccatttctcattcatcatcaaatgagtt
5695052
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 121
Target Start/End: Complemental strand, 5696062 - 5695954
Alignment:
Q
13
aaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatgagaatgttcat
112
Q
||||||||| || || |||||||| |||| | |||||| |||||||||||| |||||||| || || || |||||| | ||||||||| ||||||||
T
5696062
aaaacccatttcattgaacaatgtattctcattccatttgtcaatcatcatcaaatgagttgccaatatgtggttgcagaacaattatgaggatgttcat
5695963
T
Q
113
atccaattc
121
Q
| ||||||
T
5695962
cttcaattc
5695954
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 41385480 - 41385233
Alignment:
Q
1
ctcccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattat
100
Q
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
T
41385480
ctcccttgaaccaaaactcatctccttcaacaatgtcttctaattccattactcaatcatcatccaatgagttacctatgtgtggttgcaacaaaattat
41385381
T
Q
101
gagaatgttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaatactttgttgttctc
200
Q
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
T
41385380
gagaatgttcatatccaattcacttgacaaccctaaaaggagatattggaaatacccaacctatattgtgagtttgctgttgtaatactttgttgctctc
41385281
T
Q
201
ttat--ttttcacattttaattagctgaatatatttgttttcatctca
246
Q
|||| ||||||| |||||||||||||||||| |||||||||||||||
T
41385280
ttatttttttcactttttaattagctgaatatgtttgttttcatctca
41385233
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 194
Target Start/End: Complemental strand, 707764 - 707657
Alignment:
Q
87
tgcaacaaaattatgagaatgttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaat
186
Q
||||||||||| || || |||||||| ||||||| | ||||||||||||||||||||||||||||| ||||||| || |||| ||| | |||| ||||
T
707764
tgcaacaaaatcataaggatgttcatctccaatttaaatgaaaaccctaaaaggagatattggaaatgtccaacctttacggtgtgttcgttgttataat
707665
T
Q
187
actttgtt
194
Q
||| ||||
T
707664
actatgtt
707657
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 189
Target Start/End: Complemental strand, 28557167 - 28557065
Alignment:
Q
87
tgcaacaaaattatgagaatgttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaat
186
Q
||||||||||| || || |||||||| ||||||| | |||||| |||||||||||||||||||||| ||||||| || |||||||| | |||| ||||
T
28557167
tgcaacaaaatcataaggatgttcatctccaatttaaatgaaaatcctaaaaggagatattggaaatgtccaacctttacggtgagttcgttgttataat
28557068
T
Q
187
act
189
Q
|||
T
28557067
act
28557065
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 5975336 - 5975288
Alignment:
Q
25
cttcaacaatgtcttctaactccattactcaatcatcatccaatgagtt
73
Q
||||||||||||||||| | |||||| |||||||||||| ||||||||
T
5975336
cttcaacaatgtcttctcagtccatttgtcaatcatcatcaaatgagtt
5975288
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 19597650 - 19597405
Alignment:
Q
1
ctcccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattat
100
Q
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
T
19597650
ctcccttgaaccaaaacccatctccttcaacaatgtcttctaattccattactcaatcatcatccaatgagttacctatgtgtggttgcaacaaaattat
19597551
T
Q
101
gagaatgttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaatactttgttgttctc
200
Q
|||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
T
19597550
gagaatgttcatatccaattcagttgacaaccctaaaaggagatattgaaaatacccaacctatatggtgagtttgctgttgtaatactttgttattctc
19597451
T
Q
201
ttattttt-cacattttaattagctgaatatatttgttttcatctca
246
Q
|||||||| |||||||||||||||||||||| ||| |||||||||||
T
19597450
ttatttttgcacattttaattagctgaatatgttt-ttttcatctca
19597405
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 2 - 246
Target Start/End: Complemental strand, 19581253 - 19581011
Alignment:
Q
2
tcccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatg
101
Q
||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||| | |||| || ||||||||||||
T
19581253
tcccttgaaccaaaacccatctccttcaacaatatcttctaattctattactcaatcatcatccaatgagttacatgtgtgatttt--aacaaaattatg
19581156
T
Q
102
agaatgttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaatactttgttgttctct
201
Q
||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
T
19581155
agaatgttcatatccaattcaattgacaactctaaaaggagatattggaaatacccaacctgtatggttagtttgctgttgtaatactttgttgttctct
19581056
T
Q
202
tattttt-cacattttaattagctgaatatatttgttttcatctca
246
Q
||||||| |||||||||||||| ||||||| ||| |||||||||||
T
19581055
tatttttgcacattttaattagttgaatatgttt-ttttcatctca
19581011
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 3 - 244
Target Start/End: Complemental strand, 7799895 - 7799652
Alignment:
Q
3
cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatga
102
Q
|||| ||||||||| | ||||| |||||||||||||||||| ||||| |||||| ||||||| |||| |||||||||||| ||||||||||||| ||||
T
7799895
ccctagaaccaaaaactatctctttcaacaatgtcttctaattccataactcaaccatcatcaaatgggttacctatgtgtggttgcaacaaaatcatga
7799796
T
Q
103
gaatgttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaatactttgttg-ttctct
201
Q
||||||||||||||||||| || |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
T
7799795
aaatgttcatatccaattcaagtgcaaaccctaaaaggagatactggaaatgcccaacctatatggtgagtttgctgttgtaatactttgttgtttttct
7799696
T
Q
202
tatttt-tcacattttaattagctgaatatatttgttttcatct
244
Q
|||||| |||||||||||||| || |||| |||||||||||||
T
7799695
tattttcgcacattttaattagttggatatgtttgttttcatct
7799652
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 3 - 246
Target Start/End: Complemental strand, 19401806 - 19401561
Alignment:
Q
3
cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatga
102
Q
|||| ||||||||| | ||||| |||||||||||||||||| ||||| |||||| ||||||| |||| |||||||||||| ||||||||||||| ||||
T
19401806
ccctagaaccaaaaactatctctttcaacaatgtcttctaattccataactcaaccatcatcaaatgggttacctatgtgtggttgcaacaaaatcatga
19401707
T
Q
103
gaatgttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaatactttgttg-ttctct
201
Q
||||||||||||||||||||| ||||||||||||||||||||| ||||||| || ||| ||||||||||| || ||||||||||||||||||| || |||
T
19401706
gaatgttcatatccaattcacgtgaaaaccctaaaaggagatactggaaatgccaaacttatatggtgaggtttctgttgtaatactttgttgtttttct
19401607
T
Q
202
tatttt-tcacattttaattagctgaatatatttgttttcatctca
246
Q
|||||| |||||| |||||||||| |||| |||||||||||||||
T
19401606
tattttcgcacattataattagctgtatatgtttgttttcatctca
19401561
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 23 - 194
Target Start/End: Original strand, 1134472 - 1134642
Alignment:
Q
23
tccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatgagaatgttcatatccaattca
122
Q
||||||||||||||||||| | |||||| |||||||||||| ||| |||| ||||| || ||||||| ||||||||||| |||||||| |||||||||
T
1134472
tccttcaacaatgtcttctcattccatttgtcaatcatcatcaaatcagttgcctatatgtggttgcaaaaaaattatgaggatgttcatctccaattca
1134571
T
Q
123
cttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaatactttgtt
194
Q
| ||| || ||||||| |||||||||||||| |||||||| |||||||| | || |||| ||||| ||||||
T
1134572
catgacaa-cctaaaaagagatattggaaatgcccaacctttatggtgaatgtgttgttataatagtttgtt
1134642
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 20772652 - 20772709
Alignment:
Q
3
cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcat
60
Q
||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||||
T
20772652
cccttgaaccaaaacccatatccttcaacaatttattctaattccattactcaatcat
20772709
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 12600250 - 12600307
Alignment:
Q
3
cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcat
60
Q
||||||||||||||| ||| |||||||||||| | |||||| ||||| ||||||||||
T
12600250
cccttgaaccaaaactcatatccttcaacaatttattctaattccatcactcaatcat
12600307
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 843229 - 843175
Alignment:
Q
3
cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaat
57
Q
||||| ||||||||||||| |||||||||||| | |||||| ||||||| |||||
T
843229
cccttaaaccaaaacccatatccttcaacaatttattctaattccattagtcaat
843175
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: scaffold0129 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 3 - 197
Target Start/End: Complemental strand, 3939 - 3745
Alignment:
Q
3
cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatga
102
Q
|||| ||||||||| | ||||| |||||||||||||||||| ||||| |||||| ||||||| |||| |||||||||||| ||||||||||||| ||||
T
3939
ccctagaaccaaaaactatctctttcaacaatgtcttctaattccataactcaaccatcatcaaatgggttacctatgtgtggttgcaacaaaatcatga
3840
T
Q
103
gaatgttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaatactttgttgtt
197
Q
||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
T
3839
gaatgttcatatccaattcacatgaaaaccctaaaaggagatactggaaatgcccaacctatatggtgagtttgctgttgtaatactttgttgtt
3745
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 3 - 197
Target Start/End: Complemental strand, 31815452 - 31815258
Alignment:
Q
3
cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatga
102
Q
|||| ||||||||| | |||| |||||||||||||||||| ||||| |||||| ||||||| |||| |||||||||||| ||||||||||||| ||||
T
31815452
ccctagaaccaaaaactttctctttcaacaatgtcttctaattccataactcaaccatcatcaaatgggttacctatgtgtggttgcaacaaaatcatga
31815353
T
Q
103
gaatgttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaatactttgttgtt
197
Q
||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||
T
31815352
gaatgttcatatccaattcacatgaaaaccctaaaaggagatactggaaatgcccaacctatatgatgagtttgctgttgtaatactttgttgtt
31815258
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 8323120 - 8323032
Alignment:
Q
3
cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaa
91
Q
|||| ||||||||| | |||| |||||||||||||||||| ||||| |||||| ||||||| |||| |||||||||||| |||||||
T
8323120
ccctagaaccaaaaactttctctttcaacaatgtcttctaattccataactcaaccatcatcaaatgggttacctatgtgtggttgcaa
8323032
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 42300810 - 42300867
Alignment:
Q
3
cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcat
60
Q
||||||||||||||| ||| |||||||||||| | |||||| ||||||||||||||||
T
42300810
cccttgaaccaaaactcatatccttcaacaatttattctaattccattactcaatcat
42300867
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 52794061 - 52794118
Alignment:
Q
3
cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcat
60
Q
||||||||||||||||||| |||||||||||| | |||||| ||||| ||||||||||
T
52794061
cccttgaaccaaaacccatatccttcaacaatttattctaattccatcactcaatcat
52794118
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 9419466 - 9419362
Alignment:
Q
29
aacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatgagaatgttcatatccaattcacttgaa
128
Q
||||||||||||| | |||||| ||||||||||||| | |||||| ||||| ||| ||||||||| |||| |||||||| |||||||||| |||
T
9419466
aacaatgtcttctcattccatttctcaatcatcatcaattgagttccctatacatggttacaacaaaataatgaagatgttcatctccaattcacatgac
9419367
T
Q
129
aaccc
133
Q
|||||
T
9419366
aaccc
9419362
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 7384498 - 7384449
Alignment:
Q
87
tgcaacaaaattatgagaatgttcatatccaattcacttgaaaaccctaa
136
Q
||||||||||||||||| |||||||| ||||||||| | ||||||||||
T
7384498
tgcaacaaaattatgaggatgttcatctccaattcaaataaaaaccctaa
7384449
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 23573247 - 23573336
Alignment:
Q
85
gttgcaacaaaattatgagaatgttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtt
174
Q
|||||||||||| |||| ||||| || || |||||| ||| || |||||||||||||| ||||||| |||||| | |||||||||||
T
23573247
gttgcaacaaaacaatgaagatgtttatctcaaattcaactgagaatcctaaaaggagatactggaaatgcccaacatttatggtgagtt
23573336
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 107 - 246
Target Start/End: Original strand, 31200053 - 31200193
Alignment:
Q
107
gttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaatactttgttgttctcttattt
206
Q
|||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
T
31200053
gttcatattcaatttacttgacaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgatgttgtaatactttgttgttttcttattt
31200152
T
Q
207
t-tcacattttaattagctgaatatatttgttttcatctca
246
Q
| ||||||||||||||||||||| |||||||||||||||
T
31200153
tcgtacattttaattagctgaatatgtttgttttcatctca
31200193
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 5386895 - 5386716
Alignment:
Q
11
ccaaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatgagaatgttc
110
Q
||||||| ||| || ||||| |||||||||| | || ||| |||||||||||| |||||||| ||||| ||| |||||||||||| ||||| |||||
T
5386895
ccaaaactcatttcattcaataatgtcttctcattctatttatcaatcatcatctaatgagttgcctatttgctgttgcaacaaaaccatgaggatgtta
5386796
T
Q
111
atatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaatactt
190
Q
|||||||||||| ||||||||||||||||||| |||||||||| |||||| |||| |||||||||| ||||||||||||
T
5386795
atatccaattcaattgaaaaccctaaaaggaggtattggaaatgcccaacatataccgtgagtttgccgttgtaatactt
5386716
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 5385972 - 5386210
Alignment:
Q
11
ccaaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatgagaatgttc
110
Q
||||||| ||| || |||||||||||||||| | | |||| |||||||||||| |||||||| ||||| || ||| ||| ||| ||||| ||||||
T
5385972
ccaaaactcatttcattcaacaatgtcttctcatttcatttatcaatcatcatctaatgagttgcctatttgtggtttcaattaaaccatgaggatgttc
5386071
T
Q
111
atatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaatactttg-ttgttctcttatttt-t
208
Q
|||| ||||||| |||||||| ||||||||||||||||||||| |||||| ||| ||||||||| |||||||||||| | || || |||||||||
T
5386072
atatgcaattcaattgaaaactctaaaaggagatattggaaatgcccaacaaataccgtgagtttgtcgttgtaatacttggttttttttcttattttca
5386171
T
Q
209
cacattttaattagctgaatatatttgttttcatctcac
247
Q
||||||| |||| |||| |||| ||||||||||||||||
T
5386172
cacatttgaatttgctgcatatgtttgttttcatctcac
5386210
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 16196464 - 16196604
Alignment:
Q
23
tccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatgagaatgttcatatccaattca
122
Q
||||||||||||||||||| | |||| ||||||||||||| |||| || ||||| || ||||| |||||| || ||| |||||||| |||||||||
T
16196464
tccttcaacaatgtcttcttattccacctctcaatcatcatcatatgacttgcctatatgtggttgctacaaaagtacgaggatgttcatgtccaattca
16196563
T
Q
123
cttgaaaaccct-aaaaggagatattggaaatacccaacct
162
Q
|||||||||| | ||||| |||||||| |||| ||||||||
T
16196564
cttgaaaaccataaaaagaagatattgaaaatgcccaacct
16196604
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 34594636 - 34594769
Alignment:
Q
29
aacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatgagaatgttcatatccaattcacttgaa
128
Q
||||||||||||| | | |||| ||||| ||||||| | |||||| ||||| | |||||||| ||||| | ||| |||||||| |||||||||| |||
T
34594636
aacaatgtcttctcatttcatttctcaaccatcatcaattgagttgcctatatatagttgcaataaaataacgaggatgttcatctccaattcacatgac
34594735
T
Q
129
aaccctaaaaggagatattggaaatacccaacct
162
Q
|| |||||||| |||||||| |||| |||||||
T
34594736
aatcctaaaagaagatattgaaaatgtccaacct
34594769
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 24612627 - 24612682
Alignment:
Q
3
cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatc
58
Q
||||| ||||||||||||| |||||||||||| | |||||| ||||||||||||||
T
24612627
cccttaaaccaaaacccatatccttcaacaatttattctaattccattactcaatc
24612682
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 55198003 - 55197936
Alignment:
Q
12
caaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctat
79
Q
|||| ||||| ||||||||||||||||||| | |||||| |||| |||||||| |||||||| |||||
T
55198003
caaaccccatttccttcaacaatgtcttctcattccatttctcattcatcatcaaatgagttgcctat
55197936
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 25529579 - 25529529
Alignment:
Q
13
aaaacccatctccttcaacaatgtcttctaactccattactcaatcatcat
63
Q
||||||||| ||||||||||||||||||| | |||||| ||||||||||||
T
25529579
aaaacccatttccttcaacaatgtcttctcattccatttctcaatcatcat
25529529
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 31199633 - 31199676
Alignment:
Q
1
ctcccttgaaccaaaacccatctccttcaacaatgtcttctaac
44
Q
|||| |||||||||||| ||| ||||||||||||||||||||||
T
31199633
ctcctttgaaccaaaactcatatccttcaacaatgtcttctaac
31199676
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 1677365 - 1677462
Alignment:
Q
29
aacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatgagaatgttcatatccaattcacttg
126
Q
||||||||||||| | |||||| ||||| |||||| |||||||| || || | |||||| ||||||||||| |||||||| |||||||| ||||
T
1677365
aacaatgtcttctcattccatttgtcaattatcatcaaatgagttgccaatacgtggttgcagaaaaattatgaggatgttcatctccaattcgcttg
1677462
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 1678410 - 1678354
Alignment:
Q
23
tccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctat
79
Q
||||||||||||||||||| | |||||| |||| ||||||| |||||||| |||||
T
1678410
tccttcaacaatgtcttctcattccatttctcattcatcataaaatgagttgcctat
1678354
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 190
Target Start/End: Original strand, 28427270 - 28427434
Alignment:
Q
26
ttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatgagaatgttcatatccaattcactt
125
Q
||||| |||||||| | | |||||| ||||||||||| |||||||| ||| | || |||||||||||| ||| |||||||||||||||||| ||
T
28427270
ttcaataatgtcttgtcattccatttatcaatcatcatgtaatgagttgcctttttgtggttgcaacaaaaccgcgaggatgttcatatccaattcaatt
28427369
T
Q
126
gaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaatactt
190
Q
||||||||||||| |||||||||||||| |||||| |||| ||||||||| ||||||||||||
T
28427370
gaaaaccctaaaaagagatattggaaatgcccaacatatactctgagtttgccgttgtaatactt
28427434
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 55019064 - 55019010
Alignment:
Q
6
ttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcat
60
Q
|||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||
T
55019064
ttgaaccaaaacccatatccttcaacaatgtcatctaattccattactcaatcat
55019010
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 38158330 - 38158273
Alignment:
Q
3
cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcat
60
Q
||||||||||||||||||| ||||||||||||||| ||||| |||||||||| |||||
T
38158330
cccttgaaccaaaacccatatccttcaacaatgtcatctaattccattactcgatcat
38158273
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 23703585 - 23703530
Alignment:
Q
3
cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatc
58
Q
||||||||||||||| ||| |||||||||||| | |||||| ||||||||||||||
T
23703585
cccttgaaccaaaactcatatccttcaacaatttattctaattccattactcaatc
23703530
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 35785520 - 35785575
Alignment:
Q
3
cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatc
58
Q
||||||||||||||| ||| |||||||||||| | |||||| ||||||||||||||
T
35785520
cccttgaaccaaaactcatatccttcaacaatttattctaattccattactcaatc
35785575
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 2671912 - 2672021
Alignment:
Q
13
aaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgca-acaaaattatgagaatgttca
111
Q
||||||||| || || ||||||||||||| | |||||| |||||||||||| |||||||| || || | |||||| | ||||||||||| |||||||
T
2671912
aaaacccatttcattgaacaatgtcttctcattccatttgtcaatcatcatcaaatgagttgccaatacgtggttgcagaaaaaattatgaggatgttca
2672011
T
Q
112
tatccaattc
121
Q
| ||||||||
T
2672012
tctccaattc
2672021
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 2672675 - 2672616
Alignment:
Q
12
caaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgag
71
Q
|||| ||||| ||||||||||||||||||| | |||||| |||| |||||||| ||||||
T
2672675
caaaccccatttccttcaacaatgtcttctcattccatttctcattcatcatcaaatgag
2672616
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 4907174 - 4907119
Alignment:
Q
3
cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatc
58
Q
||||||||||||||| | | |||||||||||| | |||||| ||||||||||||||
T
4907174
cccttgaaccaaaactcttatccttcaacaatttattctaattccattactcaatc
4907119
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 4933043 - 4932988
Alignment:
Q
3
cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatc
58
Q
||||||||||||||| | | |||||||||||| | |||||| ||||||||||||||
T
4933043
cccttgaaccaaaacacttatccttcaacaatttattctaattccattactcaatc
4932988
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 174
Target Start/End: Original strand, 13507131 - 13507273
Alignment:
Q
31
caatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatgagaatgttcatatccaattcacttgaaaa
130
Q
||||||||||| | ||||||||| | ||||| || | ||||| ||||| || ||||||||||| |||| ||||| || ||||||| | |||| ||
T
13507131
caatgtcttcttattccattactaattcatcttcaattgagtg-cctatttgtggttgcaacaaagcaatgaatatgtttatctccaatttagttgacaa
13507229
T
Q
131
ccctaaaaggagatattggaaatacccaacctatatggtgagtt
174
Q
||||||||| ||||| |||||||||||||| | ||||| |||||
T
13507230
ccctaaaagaagatactggaaatacccaacatttatggcgagtt
13507273
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 174
Target Start/End: Complemental strand, 13508035 - 13507976
Alignment:
Q
115
ccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtt
174
Q
|||||||| |||| |||||||||| |||||| ||||||| |||||| | |||||||||||
T
13508035
ccaattcaattgacaaccctaaaatgagataatggaaatgcccaacatttatggtgagtt
13507976
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 29756621 - 29756676
Alignment:
Q
3
cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatc
58
Q
||||||||||||||||| | |||||||||||| | |||||| | ||||||||||||
T
29756621
cccttgaaccaaaacccttatccttcaacaatttattctaatttcattactcaatc
29756676
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 42225787 - 42225837
Alignment:
Q
85
gttgcaacaaaattatgagaatgttcatatccaattcacttgaaaacccta
135
Q
||||||||||||| ||||| |||||||| ||||||||| |||||||||||
T
42225787
gttgcaacaaaatcatgaggatgttcatctccaattcaaatgaaaacccta
42225837
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: scaffold0060 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 12950 - 12893
Alignment:
Q
3
cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcat
60
Q
||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||||
T
12950
cccttgaaccaaaacccatatccttcaacaatttattctaattccattactcaatcat
12893
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 194
Target Start/End: Original strand, 36900324 - 36900426
Alignment:
Q
92
caaaattatgagaatgttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaatacttt
191
Q
|||||| || || |||||||| ||||||| | |||||||||||||||||||||||| |||| ||||||| || |||||||| | |||| ||||||| |
T
36900324
caaaatcataaggatgttcatctccaatttaaatgaaaaccctaaaaggagatattgaaaatgtccaacctttacggtgagttcgttgttataatactat
36900423
T
Q
192
gtt
194
Q
|||
T
36900424
gtt
36900426
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 359022 - 358967
Alignment:
Q
3
cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatc
58
Q
||||| ||||||||||||| |||||||||||| | |||||| ||||||||||||||
T
359022
cccttaaaccaaaacccatatccttcaacaatttattctaattccattactcaatc
358967
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 27410150 - 27410221
Alignment:
Q
3
cccttgaaccaaaacc-catctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagtt
73
Q
|||||||||||||| ||| ||||||||||||||||| | | |||||| ||||||||||||| ||||||||
T
27410150
cccttgaaccaaaaaatcatttccttcaacaatgtcttatcattccatttctcaatcatcatcaaatgagtt
27410221
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 17707061 - 17706976
Alignment:
Q
88
gcaacaaaattatgagaatgttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtt
174
Q
|||||||||| || || |||||||| ||||||| | |||||||||| |||| ||||||||||||| ||||||| || ||||||||
T
17707061
gcaacaaaatcataaggatgttcatctccaatttaaatgaaaaccct-aaagaagatattggaaatgtccaacctttacggtgagtt
17706976
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 21143729 - 21143675
Alignment:
Q
3
cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaat
57
Q
|||||||||||||||| || | |||||||||| | |||||| |||||||||||||
T
21143729
cccttgaaccaaaaccaatatgcttcaacaatttattctaattccattactcaat
21143675
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 37964296 - 37964246
Alignment:
Q
23
tccttcaacaatgtcttctaactccattactcaatcatcatccaatgagtt
73
Q
||||||||||||||||| | | |||||| ||||||||||||| ||||||||
T
37964296
tccttcaacaatgtcttatcattccatttctcaatcatcatcaaatgagtt
37964246
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: scaffold0140 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 35941 - 36030
Alignment:
Q
85
gttgcaacaaaattatgagaatgttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtt
174
Q
|||||||||||| |||| ||||| || || |||||| |||| ||||||||||||||||| ||||||| |||||| | |||||||||||
T
35941
gttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt
36030
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 13374122 - 13374178
Alignment:
Q
4
ccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcat
60
Q
||||||||||||| ||| |||||||||||| | |||||| ||||||||||||||||
T
13374122
ccttgaaccaaaatccaaatccttcaacaatttattctaattccattactcaatcat
13374178
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 41282674 - 41282720
Alignment:
Q
17
cccatctccttcaacaatgtcttctaactccattactcaatcatcat
63
Q
||||| ||||||||||||||||||| | |||||| ||||||||||||
T
41282674
cccatttccttcaacaatgtcttctcattccatttctcaatcatcat
41282720
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 41284131 - 41284083
Alignment:
Q
13
aaaacccatctccttcaacaatgtcttctaactccattactcaatcatc
61
Q
||||||||| |||||||||||| |||||| | |||||| ||||||||||
T
41284131
aaaacccatttccttcaacaatctcttctcattccatttctcaatcatc
41284083
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
© Oklahoma State University
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