View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0253_high_20 (Length: 250)
Name: NF0253_high_20
Description: NF0253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0253_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 9 - 194
Target Start/End: Original strand, 3959196 - 3959381
Alignment:
| Q |
9 |
cttacactcttcattgcagcagtactatgattgtttacctggtcttcatctctagcaacatgggcagtagccgtgtccatctgtgatactgcaaccttat |
108 |
Q |
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| T |
3959196 |
cttacactcttcattgcagcagtactatgattgtttacctggtcttcatctctagcaacatgggcagtagccgtgtccatctgtgatactgcaactttat |
3959295 |
T |
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| Q |
109 |
ctgccagttgggaacatcccacatcagcctctttgtttgcttgaatgctgactaaattttgatactctgttgaggtgtcatctctg |
194 |
Q |
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| T |
3959296 |
ctgccagttgggaacatcccacatcagcctctttgtttgcttgaatgctgactaaattttgatactctgttgaggtgtcatctctg |
3959381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 19167998 - 19167816
Alignment:
| Q |
12 |
acactcttcattgcagcagtactatgattgtttacctggtcttcatctctagcaacatgggcagtagccgtgtccatctgtgatactgcaaccttatctg |
111 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||| |||||||||| |||||||| |||||||| |||| || |
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| T |
19167998 |
acactcttcattgcagcagtactaggattgtttacctgatcttcatatctagcaacatgggcaatagccgtgtcaatctgtgaaactgcaactttatttg |
19167899 |
T |
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| Q |
112 |
ccagttgggaacatcccacatcagcctctttgtttgcttgaatgctgactaaattttgatactctgttgaggtgtcatctctg |
194 |
Q |
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||| ||||||||||||||||||||||||||||||||| | || ||||||||||||| ||||||||||| | ||||||||||| |
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| T |
19167898 |
ccaattgggaacatcccacatcagcctctttgtttgcctaaaggctgactaaatttagatactctgttaaactgtcatctctg |
19167816 |
T |
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