View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0253_high_24 (Length: 230)
Name: NF0253_high_24
Description: NF0253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0253_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 55776551 - 55776379
Alignment:
| Q |
1 |
gacggcaaacccacccaccatcaatatgtagaagataaaggaattaggattgagattaagtatttgcaaagttgcaataagattgagaactgacatagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55776551 |
gacggcaaacccacccaccatcaatatgtagaagataaaggaattaggattgagattaagtatttgcaaagttgcaataagattgagaactgacatagaa |
55776452 |
T |
|
| Q |
101 |
gacactattttgcaagaaatatgcttcgagatgtaagaacaacgttgcatagagataataagaaatacagtgt |
173 |
Q |
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|||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
55776451 |
gacactattttgaaagaaatatgattcgagatgtaagaaaaacgttgcatagagataagaagaaatacagtgt |
55776379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 55840729 - 55840557
Alignment:
| Q |
1 |
gacggcaaacccacccaccatcaatatgtagaagataaaggaattaggattgagattaagtatttgcaaagttgcaataagattgagaactgacatagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55840729 |
gacggcaaacccacccaccatcaatatgtagaagataaaggaattaggattgagattaagtatttgcaaagttgcaataagattgagaactgacatagaa |
55840630 |
T |
|
| Q |
101 |
gacactattttgcaagaaatatgcttcgagatgtaagaacaacgttgcatagagataataagaaatacagtgt |
173 |
Q |
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|||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
55840629 |
gacactattttgaaagaaatatgattcgagatgtaagaaaaacgttgcatagagataagaagaaatacagtgt |
55840557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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