View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0253_high_8 (Length: 376)
Name: NF0253_high_8
Description: NF0253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0253_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 33 - 353
Target Start/End: Original strand, 45944580 - 45944897
Alignment:
| Q |
33 |
aggtagttatgtagcgtctctttgaatctcttttgatgttatgagtcattttatgtgatctttannnnnnnnncttctgtgtgtcaatgcagcaccaatg |
132 |
Q |
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| T |
45944580 |
aggtagttatgtagcgtctctttgaatctcttttgatgttatgagtcattttatgtgatctttatttttttt-cttctgtg--tcaatgcagcaccaatg |
45944676 |
T |
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| Q |
133 |
tacacatttatcaaagaagccacatttgctcctccaatcttaacatatgattatatagtaattggtggaggaacatgtggttgtccactagcagcaacac |
232 |
Q |
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| T |
45944677 |
tacacatttatcaaagaagccacatttgctcctccaatcttaacatatgattatatagtaattggtggaggaacatgtggttgtccactagcagcaacac |
45944776 |
T |
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| Q |
233 |
tttcacaaggtggaaaagttttattccttgaaagaggaggttcaccgtatacaaatccagaacagatcaacatacataactttgttaattcccttgctga |
332 |
Q |
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| T |
45944777 |
tttcacaaggtggaaaagttttagtccttgaaagaggaggttcaccatatacaaatccagaacagatcaacatacataactttgttaatgccctttttaa |
45944876 |
T |
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| Q |
333 |
cacaagtcctttatcattttc |
353 |
Q |
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| T |
45944877 |
tataagtccttcatcattttc |
45944897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 136 - 365
Target Start/End: Original strand, 45937928 - 45938145
Alignment:
| Q |
136 |
acatttatcaaagaagccacatttgctcctccaatcttaacatatgattatatagtaattggtggaggaacatgtggttgtccactagcagcaacacttt |
235 |
Q |
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| T |
45937928 |
acatttatcaaagaagcaacatttgctccaccaatcttaacatatgactatatagtcatagggggaggaacatgtggttgtccacttgccgcaacacttt |
45938027 |
T |
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| Q |
236 |
cacaaggtggaaaagttttattccttgaaagaggaggttcaccgtatacaaatccagaacagatcaacatacataactttgttaattcccttgctgacac |
335 |
Q |
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| T |
45938028 |
cac------------ttttagtccttgaaagaggaggttcaccatatacaaatccagaacagatcaacatacataactttgttaattcccttgctgacac |
45938115 |
T |
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| Q |
336 |
aagtcctttatcattttcccaacaattcat |
365 |
Q |
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| T |
45938116 |
aagtccttcatcattttcccaacaattcat |
45938145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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