View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0253_low_1 (Length: 796)
Name: NF0253_low_1
Description: NF0253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0253_low_1 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 442 - 796
Target Start/End: Original strand, 54497302 - 54497657
Alignment:
| Q |
442 |
ttggttatagtttatagttgataacttgaaagtttgtacttacattcttagaaggatttaaggaatctagtattgatagacaaagttaattatttgacat |
541 |
Q |
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| T |
54497302 |
ttggttatagtttatagttgataacttgaaagtttgtacttacattcttagaaggatttaaggaatctagtactgatagacaaagttaattatttgacat |
54497401 |
T |
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| Q |
542 |
aatcgcttaaagaaaagagaattattatcgaaagttattaaccaaatcctcgactaactttcaagttcaacaagagatacattaatcatccctcatgaat |
641 |
Q |
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| T |
54497402 |
aatcgcttaaagaaaagagaattattatcgaaagttattaaccaaatcctcggctaactttcaagttcaacaagagatacattaatcatctctcatgaat |
54497501 |
T |
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| Q |
642 |
gataa-ttatttttattacaataacaaataataaactaaagcaagaatcccttcaacaaaaatgggaaatttaatagaagagtaatatnnnnnnnncaaa |
740 |
Q |
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| T |
54497502 |
gataatttttttttattacaataacaaataataaactaaagcaagaatcccttcaacaaaaatgggaaatttaaaagaagagtaatataaaaaaaacaaa |
54497601 |
T |
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| Q |
741 |
tgaacatttatactatcgaaactttattacaagattgctaaagtagcagcagcatg |
796 |
Q |
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| T |
54497602 |
tgaacatttatactatcgaaactttattacaagattgctaaagtagcagcagcatg |
54497657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 91 - 240
Target Start/End: Original strand, 54496774 - 54496923
Alignment:
| Q |
91 |
tcatcatgtggttgggggtttcattggtgatgatgatgttcttaatatgacagattatataagtttctacatagacgttcgtttctataagaattaagct |
190 |
Q |
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| T |
54496774 |
tcatcatgtggttgggggtttcattggtgatgatgatgttcttaatatgacagattatatatgtttctacatagacgttcgtttctataagaattaagct |
54496873 |
T |
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| Q |
191 |
ttgtgactacatacatatatacaatgtaatatcgtgtgggtcaagatcac |
240 |
Q |
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| T |
54496874 |
ttgtgactacatacatatatacaatgtaatatcgtgtgggtcaagatcac |
54496923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 318 - 441
Target Start/End: Original strand, 54496993 - 54497116
Alignment:
| Q |
318 |
cccatgagccaactagttcaagaggtccaatcccaccgcccacttgggaggtcccaatttaaagctagaacatagttctgaatggacttagcccttagcg |
417 |
Q |
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| T |
54496993 |
cccatgagccaactagttcaagaggtccaattccaccgcccaattgggaggtcccaatttaaagctagaacacagttctgaatggacttagcccttagcg |
54497092 |
T |
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| Q |
418 |
tcagaggaaatcgaacatgagacc |
441 |
Q |
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| T |
54497093 |
tcagaggaaatcgaacatgagacc |
54497116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 341 - 407
Target Start/End: Original strand, 15485330 - 15485396
Alignment:
| Q |
341 |
ggtccaatcccaccgcccacttgggaggtcccaatttaaagctagaacatagttctgaatggactta |
407 |
Q |
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| T |
15485330 |
ggtccaatcccaccatccacttgcggggaccccatttaaagccagaacatagttttgtatggactta |
15485396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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