View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0253_low_11 (Length: 400)
Name: NF0253_low_11
Description: NF0253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0253_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 71 - 354
Target Start/End: Original strand, 49518018 - 49518287
Alignment:
| Q |
71 |
accttgtgttaagaagaggaagaaagcacaaatgagtaaaaatgacaaagatcataataacctccaacacatggatatggttgctgttgacaaagcaagc |
170 |
Q |
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| T |
49518018 |
accttgtgttaagaagaggaagaaagcacaaatgagtaaaaatgacaaagatcataataacctccaacacatggatatggttgctgttgacaaagc---- |
49518113 |
T |
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| Q |
171 |
aaagaagagcttgaactattgcttgctgatgacaaggggatagaaactggtctcaagggatataatctaaaatttnnnnnnnggaaggacaaaatgggga |
270 |
Q |
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| T |
49518114 |
----------ttgaactattgcttcctgatgacaaggggatagaaactggtctcaagggatataatctaaaatttaaaaaaaggaaggacaaaatgggga |
49518203 |
T |
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| Q |
271 |
aggagaatgttattattgatgagggtaaagtaccaaacagtacatatagtgatgatcaacgttttgttgcacttcttttctctc |
354 |
Q |
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| T |
49518204 |
aggagaatgttattattgatgagggtaaagtaccaaacagtacatatagtgatgatcaacgttttgttgcacttcttttctctc |
49518287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 141 - 336
Target Start/End: Original strand, 27747445 - 27747640
Alignment:
| Q |
141 |
atggatatggttgctgttgacaaagcaagcaaagaagagcttgaactattgcttgctgatgacaaggggatagaaactggtctcaagggatataatctaa |
240 |
Q |
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| T |
27747445 |
atggatatagttgctgttgacaaagcaagcaaagaagagcttgagttattgcttgctgatgacaaggcgacagaaactggtctcaaaggatatagtctaa |
27747544 |
T |
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| Q |
241 |
aatttnnnnnnnggaaggacaaaatggggaaggagaatgttattattgatgagggtaaagtaccaaacagtacatatagtgatgatcaacgttttg |
336 |
Q |
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| T |
27747545 |
aatttaaaaaaaggaaggacaaaatgggaaaggagaatgttattattgatgagggtaaagttccaaacagtacatatagtgatgatccacgttttg |
27747640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 38527452 - 38527375
Alignment:
| Q |
161 |
caaagcaagcaaagaagagcttgaactattgcttgctgatgacaaggggatagaaactggtctcaagggatataatct |
238 |
Q |
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| T |
38527452 |
caaagcaagcaaagaagagcttgaactgttgcttgctgatgacaaggggacaggtactggtctcaagggatataatct |
38527375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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