View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0253_low_13 (Length: 388)

Name: NF0253_low_13
Description: NF0253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0253_low_13
NF0253_low_13
[»] chr4 (1 HSPs)
chr4 (1-366)||(29280825-29281190)
[»] chr7 (1 HSPs)
chr7 (48-250)||(21969071-21969273)


Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 29281190 - 29280825
Alignment:
Q  1 atgcttctttaatgagaagctgtgcagggtctatctctggtgataaagtgatgaatgactccactttagcaactgcttcttcattggtgaaatattggtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29281190 atgcttctttaatgagaagctgtgcagggtctatctctggtgataaagtgatgaatgactccactttagcaactgcttcttcattggtgaaatattggtg 29281091  T
Q  101 aagtccatcagaacacaatatcaagaatttgtcactagggtttagtctatggtggtggagtgaaggggaacatgtgatgtatggagagtcaccaatgtag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29281090 aagtccatcagaacacaatatcaagaatttgtcactagggtttagcctatggtggtggagtgaaggggaacatgtgatgtatggagagtcaccaatgtag 29280991  T
Q  201 ttaactttgaaagcctctaatattgcattattttgtttaggctgcaaaatggatcaataaaattcaagagttaggaacagattatagaaattgtatcata 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29280990 ttaactttgaaagcctctaatattgcattattttgtttaggctgcaaaatggatcaataaaattcaagagttaggaacagattatagaaattgtatcata 29280891  T
Q  301 gatcactagtactctaggttttaaacttctgtcacagtaacaattgtggctgcctcatgtgatgat 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  29280890 gatcactagtactctaggttttaaacttctgtcacagtaacaattgtggttgcctcatgtcatgat 29280825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 48 - 250
Target Start/End: Original strand, 21969071 - 21969273
Alignment:
Q  48 gtgatgaatgactccactttagcaactgcttcttcattggtgaaatattggtgaagtccatcagaacacaatatcaagaatttgtcactagggtttagtc 147  Q
    |||||||||||||| |||||||| | |||||||||||||||||| ||||||| ||||||||||||| | | ||| |  ||||||||||| | ||| || |    
T  21969071 gtgatgaatgactctactttagccattgcttcttcattggtgaagtattggtaaagtccatcagaagatagtataagaaatttgtcacttgagttgagcc 21969170  T
Q  148 tatggtggtggagtgaaggggaacatgtgatgtatggagagtcaccaatgtagttaactttgaaagcctctaatattgcattattttgtttaggctgcaa 247  Q
    | || || |  ||||||||||| |||||||| |||||||| || || ||||||||||||||||||| |||||| ||||||| |||||| |||||||||||    
T  21969171 tgtgatgatatagtgaaggggagcatgtgatatatggagattcccctatgtagttaactttgaaagtctctaacattgcatcattttgcttaggctgcaa 21969270  T
Q  248 aat 250  Q
    |||    
T  21969271 aat 21969273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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