View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0253_low_15 (Length: 362)
Name: NF0253_low_15
Description: NF0253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0253_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 110 - 295
Target Start/End: Original strand, 14977491 - 14977676
Alignment:
| Q |
110 |
gcagaaagattcatggagaacagttctaacactagcatatcaaagtcttggagtagtttatggagatttaagcatttcacctttatatgtgtttagaagt |
209 |
Q |
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| T |
14977491 |
gcagaaagattcatggagaacagttctaacactagcatatcaaagtcttggagtagtttatggagatttaagcatttcacctttatatgtgtttagaagt |
14977590 |
T |
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| Q |
210 |
acttttggtgaaggaattggacactcaaatacaaatgaagagatttatggtgttttgtctttggtgttttggtctgttacattagt |
295 |
Q |
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| T |
14977591 |
acttttggtgaaggaattggacactcaaatacaaatgaagagatttatggtgttttgtctctggtgttttggtctgttacattagt |
14977676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 281
Target Start/End: Original strand, 1807871 - 1808008
Alignment:
| Q |
144 |
gcatatcaaagtcttggagtagtttatggagatttaagcatttcacctttatatgtgtttagaagtacttttggtgaaggaattggacactcaaatacaa |
243 |
Q |
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| T |
1807871 |
gcatatcaaagtttaggagttgtgtatggagatttaagcacttctccactatatgtatacaaaagcacttttgctgaggatattgaacattcagatacaa |
1807970 |
T |
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| Q |
244 |
atgaagagatttatggtgttttgtctttggtgttttgg |
281 |
Q |
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| T |
1807971 |
atgaagaaatctttggtgtattgtcttttgtgttttgg |
1808008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 15385910 - 15385948
Alignment:
| Q |
140 |
actagcatatcaaagtcttggagtagtttatggagattt |
178 |
Q |
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| T |
15385910 |
actagcatatcaaagtcttggtgtagtttacggagattt |
15385948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 259
Target Start/End: Complemental strand, 42988527 - 42988415
Alignment:
| Q |
147 |
tatcaaagtcttggagtagtttatggagatttaagcatttcacctttatatgtgtttagaagtacttttggtgaaggaattggacactcaaatacaaatg |
246 |
Q |
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|||||||||||||| || || |||||||| || || ||||| || || ||||| || | ||| ||||||| ||||| |||| ||| ||| | || |||| |
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| T |
42988527 |
tatcaaagtcttggtgttgtatatggagacttgagtatttctccattgtatgttttcacaagcacttttgctgaagatattgaacattcagagactaatg |
42988428 |
T |
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| Q |
247 |
aagagatttatgg |
259 |
Q |
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| T |
42988427 |
aagagatttatgg |
42988415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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