View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0253_low_2 (Length: 646)
Name: NF0253_low_2
Description: NF0253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0253_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 28 - 629
Target Start/End: Original strand, 31749509 - 31750110
Alignment:
| Q |
28 |
cacttatcacattcaaagttcttgtaattatatcaagatgatgatgatacttttaaatatatgaaatgtcatatgtaatagacaaaatcctagatatgct |
127 |
Q |
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| T |
31749509 |
cacttatcacattcaaagttcttgtaattatatcaagatgatgatgatacttttaaatctatgaaatgtcatatgtaatagacaaaatcctagatatgct |
31749608 |
T |
|
| Q |
128 |
aatttagttaatgtagatttcaataggatcttgaatgttggtgctgtttttcaggaaggaatcgctgtgggaagaagctttgcaatgtataaaaattacc |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31749609 |
aatttagttaatgtagatttcaataggatcttgaatgttggtgctgtttttcaggaaggaatcgctgtgggaagaagctttgcaatgtataaaaattacc |
31749708 |
T |
|
| Q |
228 |
atattgatggaaacaaagagatgatagctattggaaccatgaacatagttggttctttcacctcttgctacctcacaacaggtaaacatcatcaccaaat |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31749709 |
atattgatggaaacaaagagatgatagctattggaaccatgaacatagttggttctttcacctcttgctacctcacaacaggtaaacatcatcaccaaat |
31749808 |
T |
|
| Q |
328 |
gttaacttcaatattacctttgcccataaatttctgacatgtttttggtataaaaatgataaatctttcagggccattttcgcgctcggccgtgaactat |
427 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31749809 |
gttaacttcaatattacctttgcacataaatttctcacatgtttttggtataaaaatgataaatctttcagggccattttcgcgctcggccgtgaactat |
31749908 |
T |
|
| Q |
428 |
aatgctggatgcaagacagcagcatccaacattgtgatgtcaattgcagtcatgttgacactgttattcttgacacctttgttctattacactcctctgg |
527 |
Q |
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| T |
31749909 |
aatgctggatgcaagacagcagcatccaacattgtgatgtcaattgcagtcatgttgacactgttattcttgacacctttgttctattacactcctctgg |
31750008 |
T |
|
| Q |
528 |
tggtactagcagccataattgtatctgcaatgcttggacttatagattatgaagcagccatccatctctggaagattgacaaattcgattttttcgtctg |
627 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31750009 |
tggtactagcagccataattgtatctgcaatgcttggacttatagattatgaagcagccatccatctctggaagattgacaaattcgattttttcgtctg |
31750108 |
T |
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| Q |
628 |
ca |
629 |
Q |
| |
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|| |
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| T |
31750109 |
ca |
31750110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 2e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 393 - 621
Target Start/End: Complemental strand, 38216020 - 38215792
Alignment:
| Q |
393 |
tttcagggccattttcgcgctcggccgtgaactataatgctggatgcaagacagcagcatccaacattgtgatgtcaattgcagtcatgttgacactgtt |
492 |
Q |
| |
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||||||| || |||||||| ||||| ||||||||||||||||| |||||||| |||||||| |||||||| ||| |||| ||||| ||||||||| | || |
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| T |
38216020 |
tttcaggaccgttttcgcgttcggctgtgaactataatgctgggtgcaagactgcagcatcaaacattgtaatggcaatagcagtgatgttgacattatt |
38215921 |
T |
|
| Q |
493 |
attcttgacacctttgttctattacactcctctggtggtactagcagccataattgtatctgcaatgcttggacttatagattatgaagcagccatccat |
592 |
Q |
| |
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|||| | ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||| |
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| T |
38215920 |
attcctaacacctttgtttcattacactcctctagtggtactagcagccataattgtatctgcaatgcttggactcattgattatgaagcagcaatccat |
38215821 |
T |
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| Q |
593 |
ctctggaagattgacaaattcgatttttt |
621 |
Q |
| |
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| T |
38215820 |
ttgtggaaaattgacaaatttgatttttt |
38215792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 180 - 311
Target Start/End: Complemental strand, 38216259 - 38216128
Alignment:
| Q |
180 |
aggaaggaatcgctgtgggaagaagctttgcaatgtataaaaattaccatattgatggaaacaaagagatgatagctattggaaccatgaacatagttgg |
279 |
Q |
| |
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|||||||||| || |||||||||||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||| |||||||| || |||| |
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| T |
38216259 |
aggaaggaatagcagtgggaagaagctttgcaatgttcaaaaattaccatattgatggcaataaagaaatgatagctattggtaccatgaatatttttgg |
38216160 |
T |
|
| Q |
280 |
ttctttcacctcttgctacctcacaacaggta |
311 |
Q |
| |
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||| || ||||||||||||||||||||||||| |
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| T |
38216159 |
ttcattaacctcttgctacctcacaacaggta |
38216128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 575 - 619
Target Start/End: Original strand, 1494858 - 1494902
Alignment:
| Q |
575 |
tatgaagcagccatccatctctggaagattgacaaattcgatttt |
619 |
Q |
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|||||||||||||| | ||| ||||||||||||||||| |||||| |
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| T |
1494858 |
tatgaagcagccattcttctgtggaagattgacaaatttgatttt |
1494902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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