View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0253_low_29 (Length: 318)

Name: NF0253_low_29
Description: NF0253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0253_low_29
NF0253_low_29
[»] chr6 (1 HSPs)
chr6 (96-249)||(13271044-13271197)


Alignment Details
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 96 - 249
Target Start/End: Original strand, 13271044 - 13271197
Alignment:
Q  96 ataaaagattcacattctctatgattgatctctgatggacatcagtatattcgctgaacatctcaaatcctcccatcatcatatagttgccaaattgttc 195  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||  ||||||||||| |||||||||||||||||||||||||||||||    
T  13271044 ataaaagattcacattctctatgattgacctctgatggacatcagtatattcactcgacatctcaaatgctcccatcatcatatagttgccaaattgttc 13271143  T
Q  196 caaaacatttccaccttcacttggtgtagcaagatgcaattcaagatattcttc 249  Q
    ||||||| |||||| |||| ||||||||||||||| ||||||||||||||||||    
T  13271144 caaaacaattccactttcagttggtgtagcaagattcaattcaagatattcttc 13271197  T

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