View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0253_low_3 (Length: 559)
Name: NF0253_low_3
Description: NF0253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0253_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 17)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 102 - 490
Target Start/End: Complemental strand, 13161847 - 13161459
Alignment:
| Q |
102 |
aagagatcaaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13161847 |
aagagatcaaagataattggctaacacaagaggataatcggattattttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga |
13161748 |
T |
|
| Q |
202 |
aaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatactacctagtggagagcgtattagtccaaatacacgttta |
301 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
13161747 |
aaccttaaggctttatccacctataccttttgagcatatctgtgcaatcaaatccgatatactacctagtggagaacgtattagtccaaatacaagttta |
13161648 |
T |
|
| Q |
302 |
atgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatttaagcctgagagatggatatctgagaggggagatatta |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13161647 |
atgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatttaagcctgagagatggatatctgagaggggagatatta |
13161548 |
T |
|
| Q |
402 |
tacatgtaccatcttacaagttcatagctttcaacactggacccagaatttgtataggtaaagatcttagtttcattcaaatgatgatg |
490 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13161547 |
tacatgtaccttcttacaagttcatatctttcaacacaggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatg |
13161459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 102 - 490
Target Start/End: Complemental strand, 13130154 - 13129766
Alignment:
| Q |
102 |
aagagatcaaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga |
201 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13130154 |
aagagatcaaagataattggttaacacaagagggtaatcggattactttgaggcatgtggatcttgataagctagtatacctccatggagctatatgtga |
13130055 |
T |
|
| Q |
202 |
aaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatactacctagtggagagcgtattagtccaaatacacgttta |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| | | | |||||||||||||| ||| |
|
|
| T |
13130054 |
aaccttaaggctttatcctcctataccttttgagcatatctgttcaatcaaatctgatatactacctagtggataccatgttagtccaaatacaactttg |
13129955 |
T |
|
| Q |
302 |
atgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatttaagcctgagagatggatatctgagaggggagatatta |
401 |
Q |
| |
|
|| |||||| ||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13129954 |
atttactctttgtattctatgggaaggatggaacaaatatggggagaagactgcatggaatttaagcctgagagatggatatctgagaggggagatatta |
13129855 |
T |
|
| Q |
402 |
tacatgtaccatcttacaagttcatagctttcaacactggacccagaatttgtataggtaaagatcttagtttcattcaaatgatgatg |
490 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13129854 |
tacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatg |
13129766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 102 - 490
Target Start/End: Complemental strand, 13094725 - 13094337
Alignment:
| Q |
102 |
aagagatcaaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga |
201 |
Q |
| |
|
||||||||| |||||||||| |||||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13094725 |
aagagatcagagataattggttaacacgagaggattatcggattactttgagggatgtggatcttgataagctagtatacctccatggagctatatgtga |
13094626 |
T |
|
| Q |
202 |
aaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatactacctagtggagagcgtattagtccaaatacacgttta |
301 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| | | | ||| |||||||||| |||| |
|
|
| T |
13094625 |
aaccttaaggctttatcctcctgtaccttttgagcatatctgtgcaatcaaatctgatatactacctagtggataccatgttactccaaatacaacttta |
13094526 |
T |
|
| Q |
302 |
atgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatttaagcctgagagatggatatctgagaggggagatatta |
401 |
Q |
| |
|
|| |||||| ||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13094525 |
atttactctttgtattctatgggaaggatggaacaaatatggggagaagactgcatggaatttaagcctgagagatggatatctgagaggggagatatta |
13094426 |
T |
|
| Q |
402 |
tacatgtaccatcttacaagttcatagctttcaacactggacccagaatttgtataggtaaagatcttagtttcattcaaatgatgatg |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
13094425 |
tacatgtaccatcttacaagttcatagctttcaacacaggacccagaatttgtataggtaaagatattagtttcattcaaatgaagatg |
13094337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 102 - 490
Target Start/End: Complemental strand, 13007526 - 13007138
Alignment:
| Q |
102 |
aagagatcaaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga |
201 |
Q |
| |
|
|||| ||||||||||| |||| ||||||||||| |||| || | ||||| ||||||| ||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
13007526 |
aagaaatcaaagataactggcccacacaagaggagaatcagactcctttgagagatgtggatcttgataagctagtgtacctccatggagctctatgtga |
13007427 |
T |
|
| Q |
202 |
aaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatactacctagtggagagcgtattagtccaaatacacgttta |
301 |
Q |
| |
|
| || | ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| | ||| |
|
|
| T |
13007426 |
agccatgaggctttatcctcctgtaccttttgagcatatctgtgcaatcaattccgatatactacctagtggagagcgtgttagtccaaatacaaggtta |
13007327 |
T |
|
| Q |
302 |
atgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatttaagcctgagagatggatatctgagaggggagatatta |
401 |
Q |
| |
|
|||||||| |||| ||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| | || ||||| ||| | |||| |
|
|
| T |
13007326 |
ttgtactctttgtacgctatgggaaggatggaacaaatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacatta |
13007227 |
T |
|
| Q |
402 |
tacatgtaccatcttacaagttcatagctttcaacactggacccagaatttgtataggtaaagatcttagtttcattcaaatgatgatg |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || || || |||| |||||| || || ||| |||| ||||||||||||| |||| |
|
|
| T |
13007226 |
tacatgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtatgggcaaggatattagcttcattcaaatgaagatg |
13007138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 110 - 490
Target Start/End: Original strand, 13070050 - 13070430
Alignment:
| Q |
110 |
aaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtgaaaccttaa |
209 |
Q |
| |
|
|||||||| |||| ||||||||||| |||| || | | ||| ||||||| ||||||||| ||||| ||||| ||||||||||||||||||||||| | |
|
|
| T |
13070050 |
aaagataactggcccacacaagaggagaatcagactccttggagagatgtggatcttgataatctagtgtaccttcatggagctatatgtgaaaccttga |
13070149 |
T |
|
| Q |
210 |
ggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatactacctagtggagagcgtattagtccaaatacacgtttaatgtactc |
309 |
Q |
| |
|
| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||| ||||||| |
|
|
| T |
13070150 |
gactttatcctcctgtaccttttgagcatatatgtgcaatcaaatccgatatactacctagtggagagcgtgttagtccaaatacaaggttattgtactc |
13070249 |
T |
|
| Q |
310 |
tatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatttaagcctgagagatggatatctgagaggggagatattatacatgta |
409 |
Q |
| |
|
| |||| ||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||| |||| ||| | ||||||||||| |
|
|
| T |
13070250 |
tttgtacgctatgggaaggatggaacaaatatggggagaagactgcatggaatttaagcctgagagatgggtatcagagacaggacacattatacatgtt |
13070349 |
T |
|
| Q |
410 |
ccatcttacaagttcatagctttcaacactggacccagaatttgtataggtaaagatcttagtttcattcaaatgatgatg |
490 |
Q |
| |
|
|||||||||||||||||||||||||| || || || |||| |||| | |||||||||||||||||||||||||||| |||| |
|
|
| T |
13070350 |
ccatcttacaagttcatagctttcaatacaggtccgagaagttgtttgggtaaagatcttagtttcattcaaatgaagatg |
13070430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 102 - 490
Target Start/End: Complemental strand, 13204785 - 13204397
Alignment:
| Q |
102 |
aagagatcaaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga |
201 |
Q |
| |
|
|||| ||||||||||| || | ||||||||||| |||| |||| | ||| |||| | ||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
13204785 |
aagaaatcaaagataactgtcctacacaagaggagaatcagattccttcgagagatgagtatcttgataagctagtgtaccttcatggagctatatgtga |
13204686 |
T |
|
| Q |
202 |
aaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatactacctagtggagagcgtattagtccaaatacacgttta |
301 |
Q |
| |
|
| |||| || |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||| |
|
|
| T |
13204685 |
agccttgagactttatcctcctgtaccttttgagcatatatgtgcaatcaaatccgatatactacctagtggagagcgtgttagtccaaatacaaggtta |
13204586 |
T |
|
| Q |
302 |
atgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatttaagcctgagagatggatatctgagaggggagatatta |
401 |
Q |
| |
|
|||||||| |||| ||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||| |||| ||| | |||| |
|
|
| T |
13204585 |
ttgtactctttgtacgctatgggaaggatggaacaaatatggggagaagactgcatggaatttaagcctgagagatgggtatcagagacaggacacatta |
13204486 |
T |
|
| Q |
402 |
tacatgtaccatcttacaagttcatagctttcaacactggacccagaatttgtataggtaaagatcttagtttcattcaaatgatgatg |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || || || |||| |||| | |||||||||||||||||||||||||||| |||| |
|
|
| T |
13204485 |
tacatgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtttgggtaaagatcttagtttcattcaaatgaagatg |
13204397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 102 - 490
Target Start/End: Complemental strand, 13101326 - 13100939
Alignment:
| Q |
102 |
aagagatcaaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga |
201 |
Q |
| |
|
|||| ||||||||||| || | ||||||||||| |||| |||| | ||| |||| | ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13101326 |
aagaaatcaaagataactgtcctacacaagaggagaatcagattccttcgagagatgagtatcttgataagctagtgtacctccatggagctatatgtga |
13101227 |
T |
|
| Q |
202 |
aaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatactacctagtggagagcgtattagtccaaatacacgttta |
301 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| |||||||||||||| | ||| |
|
|
| T |
13101226 |
aaccttgaggctttatcctcctgtaccttttgagcatatatgttcaatcaaatccgatatacttcctagtggagagcgttttagtccaaatacaaggtta |
13101127 |
T |
|
| Q |
302 |
atgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatttaagcctgagagatggatatctgagaggggagatatta |
401 |
Q |
| |
|
|||||||| |||| ||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| | || ||||| ||| | |||| |
|
|
| T |
13101126 |
ttgtactctttgtacgctatgggaaggatggaacaaatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacatta |
13101027 |
T |
|
| Q |
402 |
tacatgtaccatcttacaagttcatagctttcaacactggacccagaatttgtataggtaaagatcttagtttcattcaaatgatgatg |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||| |||| |||||| ||||| ||| |||| ||||||||||||| |||| |
|
|
| T |
13101026 |
tacatgtaccatcttacaagttcatagctttcaa-tcaggacctagaagttgtatgggtaaggatattagcttcattcaaatgaagatg |
13100939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 164 - 490
Target Start/End: Original strand, 30368036 - 30368362
Alignment:
| Q |
164 |
cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatac |
263 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| || | ||| | |||||| || |||||||||||| |||| ||||||||||||| ||||||| |
|
|
| T |
30368036 |
cttgataagctagtctacctccatggagctatatgtgaatccatgaggttgtatcctactgtaccttttgagcttatcagtgcaatcaaatctgatatac |
30368135 |
T |
|
| Q |
264 |
tacctagtggagagcgtattagtccaaatacacgtttaatgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatt |
363 |
Q |
| |
|
|||||||||||||| | ||||||||||||| ||||| |||||| ||||| ||||||| ||||||||| || ||||||| ||||| ||||||||||| |
|
|
| T |
30368136 |
tacctagtggagagaatgttagtccaaataccaagttaatttactctttgtatgctatgggaaggatggaaaaaatatggggagaagattgcatggaatt |
30368235 |
T |
|
| Q |
364 |
taagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagctttcaacactggacccagaatttgtataggtaaa |
463 |
Q |
| |
|
|||||||||||||||| |||| ||||| ||| | |||||||||||||||||||||||||||||||||||||| || ||||| |||| |||||| |||||| |
|
|
| T |
30368236 |
taagcctgagagatgggtatcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaatacaggacctagaagttgtatgggtaaa |
30368335 |
T |
|
| Q |
464 |
gatcttagtttcattcaaatgatgatg |
490 |
Q |
| |
|
|||||||||||| ||||||||| |||| |
|
|
| T |
30368336 |
gatcttagtttcgttcaaatgaagatg |
30368362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 164 - 435
Target Start/End: Original strand, 13065141 - 13065412
Alignment:
| Q |
164 |
cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatac |
263 |
Q |
| |
|
|||||||| ||| | |||||||| ||||||||||||||| |||||||||||||||||||| ||||| | ||||| | | |||||||||| | ||||||| |
|
|
| T |
13065141 |
cttgataaactaatttacctccacggagctatatgtgaagccttaaggctttatcctcctgtacctatcgagcaaaagtttgcaatcaaagctgatatac |
13065240 |
T |
|
| Q |
264 |
tacctagtggagagcgtattagtccaaatacacgtttaatgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatt |
363 |
Q |
| |
|
| |||||||||| | | | |||||||||||| | || | |||| | ||||||| ||||| |||||||| || ||||||| ||||||||||||||||| |
|
|
| T |
13065241 |
ttcctagtggagtccatgtaagtccaaatacaaggatattatactatttgtattcaatgggaaggatggagaaaatatggggagaagactgcatggaatt |
13065340 |
T |
|
| Q |
364 |
taagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagctttcaa |
435 |
Q |
| |
|
||||||||||||||||||||| | || ||| | |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13065341 |
taagcctgagagatggatatcaaaaagcggacaaattatacatgtaccgtcttacaagttcatagctttcaa |
13065412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 164 - 485
Target Start/End: Original strand, 12963803 - 12964124
Alignment:
| Q |
164 |
cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatac |
263 |
Q |
| |
|
||||||||||| || || || ||||||||||| |||||| | ||||||||||||||||||||||| ||||| || | |||||||| ||||| |||||| |
|
|
| T |
12963803 |
cttgataagcttgtttatcttcatggagctatttgtgaagctttaaggctttatcctcctataccatttgaacacaagtgtgcaattaaatcagatatat |
12963902 |
T |
|
| Q |
264 |
tacctagtggagagcgtattagtccaaatacacgtttaatgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatt |
363 |
Q |
| |
|
||||||||||||| | | |||||||||||||| || || || ||| ||||| | ||||| |||||||||||| ||||||| ||||| ||| ||||||| |
|
|
| T |
12963903 |
tacctagtggagaccatgttagtccaaatacaaagttgatatattctttgtatgcaatgggaaggatggaacaaatatggggagaagattgcttggaatt |
12964002 |
T |
|
| Q |
364 |
taagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagctttcaacactggacccagaatttgtataggtaaa |
463 |
Q |
| |
|
||||||||| ||||||||||| | || ||||| |||||||| || |||||||| ||||||||||| ||||| | || || |||| |||||| || ||| |
|
|
| T |
12964003 |
taagcctgaaagatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaatgcaggtcctagaagttgtattgggaaa |
12964102 |
T |
|
| Q |
464 |
gatcttagtttcattcaaatga |
485 |
Q |
| |
|
||| |||| || ||||||||| |
|
|
| T |
12964103 |
gatattagctttgttcaaatga |
12964124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 164 - 429
Target Start/End: Original strand, 19279096 - 19279361
Alignment:
| Q |
164 |
cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatac |
263 |
Q |
| |
|
|||||||||||||| || || |||||||||||||||||| |||||||||||||||| ||| |||| ||||| || | |||||| | || |||||||||| |
|
|
| T |
19279096 |
cttgataagctagtttatcttcatggagctatatgtgaagccttaaggctttatccacctgtaccatttgaacacaagtgtgcagttaattccgatatac |
19279195 |
T |
|
| Q |
264 |
tacctagtggagagcgtattagtccaaatacacgtttaatgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatt |
363 |
Q |
| |
|
||||||||||||| | | |||||| ||||||| ||||| |||||| ||||| | ||||| |||||||||||| ||||||| || || ||| | ||||| |
|
|
| T |
19279196 |
tacctagtggagaccatgttagtctaaatacaaagttaatatactctttgtatgcaatgggaaggatggaacaaatatggggtgatgattgcctagaatt |
19279295 |
T |
|
| Q |
364 |
taagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagc |
429 |
Q |
| |
|
| |||||||||||||||||| || || ||| | ||||||||||||||||| |||||||||||||| |
|
|
| T |
19279296 |
tcggcctgagagatggatatcggatagaggacaaattatacatgtaccatcgtacaagttcatagc |
19279361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 165 - 485
Target Start/End: Original strand, 13244450 - 13244770
Alignment:
| Q |
165 |
ttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatact |
264 |
Q |
| |
|
|||||||||| || ||||| |||||||| |||||||||||||| ||||| ||||||||| | | ||| |||| | || || |||||||| |||||||| |
|
|
| T |
13244450 |
ttgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctcctctggcatttcagcacaagtgcgctatcaaatctgatatact |
13244549 |
T |
|
| Q |
265 |
acctagtggagagcgtattagtccaaatacacgtttaatgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaattt |
364 |
Q |
| |
|
|||||||||||| | | || ||||||||||| || || || ||| ||||| | ||||| |||||| ||||| ||||||| || || ||| |||||||| |
|
|
| T |
13244550 |
acctagtggagaacatgttggtccaaatacaaagttgatatattctttgtatgcaatgggaaggatgcaacaaatatggggagatgattgcttggaattt |
13244649 |
T |
|
| Q |
365 |
aagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagctttcaacactggacccagaatttgtataggtaaag |
464 |
Q |
| |
|
|||||||| ||||||||||| | || |||| |||||| ||||||| ||||||||||||||||||||||| | || || |||| |||||| || |||| |
|
|
| T |
13244650 |
aagcctgaaagatggatatcagctagaggagggattataaatgtaccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaag |
13244749 |
T |
|
| Q |
465 |
atcttagtttcattcaaatga |
485 |
Q |
| |
|
||||||| ||| ||||||||| |
|
|
| T |
13244750 |
atcttagcttcgttcaaatga |
13244770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 165 - 435
Target Start/End: Complemental strand, 13271849 - 13271579
Alignment:
| Q |
165 |
ttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatact |
264 |
Q |
| |
|
|||||||||| | ||||| |||| |||||||||||||||||| || ||||||||||||||||| ||||| || | |||||| | || || |||||||| |
|
|
| T |
13271849 |
ttgataagctgatttaccttcatgcagctatatgtgaaaccttgagactttatcctcctataccatttgatcacaagtgtgcagttaattctgatatact |
13271750 |
T |
|
| Q |
265 |
acctagtggagagcgtattagtccaaatacacgtttaatgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaattt |
364 |
Q |
| |
|
|||||||||| | | | || ||||||| ||| ||||| |||||| ||||| | ||||| || |||||||| ||||||| | || ||| |||| ||| |
|
|
| T |
13271749 |
acctagtggacaccatgttggtccaaacacaaagttaatatactctttgtatgcaatgggaagaatggaacatgtatggggtggtgattgcttggagttt |
13271650 |
T |
|
| Q |
365 |
aagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagctttcaa |
435 |
Q |
| |
|
|||||||||||||||||||| || | ||| | |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13271649 |
aagcctgagagatggatatcagataaaggacaaattatacatgtaccatcttacaagttcatagcattcaa |
13271579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 164 - 429
Target Start/End: Original strand, 13080793 - 13081058
Alignment:
| Q |
164 |
cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatac |
263 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||||||||| |||||||||| |||||| || || | ||| |||| | ||||| |||||||| |||| || |
|
|
| T |
13080793 |
cttgataagctagtttaccttcatggagccatatgtgaagccttaaggctatatccttctgtagcatttcagcacaagtgtgctatcaaatcggataaac |
13080892 |
T |
|
| Q |
264 |
tacctagtggagagcgtattagtccaaatacacgtttaatgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatt |
363 |
Q |
| |
|
| ||||||||||| | | |||||||||||||| ||||| || ||| ||||| | ||||| |||||||| ||| ||||||| || || ||| |||| || |
|
|
| T |
13080893 |
ttcctagtggagaccatgttagtccaaatacaaagttaatatattctttgtatgcaatgggaaggatggagcaaatatggggagaggattgcttggagtt |
13080992 |
T |
|
| Q |
364 |
taagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagc |
429 |
Q |
| |
|
||||||||||||||||||||| || || ||| | |||||||| || || ||||| ||||||||||| |
|
|
| T |
13080993 |
taagcctgagagatggatatcagatagaggacaaattatacaagtgccgtcttataagttcatagc |
13081058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 168 - 429
Target Start/End: Complemental strand, 13086367 - 13086106
Alignment:
| Q |
168 |
ataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatactacc |
267 |
Q |
| |
|
|||| ||||| ||||| |||||||||||||||||| | || ||||||||||||||| |||| ||| |||| | |||||||||||| | ||||||||||| |
|
|
| T |
13086367 |
ataaactagtgtaccttcatggagctatatgtgaagcattgaggctttatcctcctgtaccatttcagcacaagtgtgcaatcaaagctgatatactacc |
13086268 |
T |
|
| Q |
268 |
tagtggagagcgtattagtccaaatacacgtttaatgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatttaag |
367 |
Q |
| |
|
||||||||| | ||| |||||||| ||||| |||||| ||||| | ||||| |||||| ||||| ||||||| | || || | ||||||||| |
|
|
| T |
13086267 |
tagtggagattatgttaaaccaaatactaagttaatatactctttgtatgcaatgggaaggatgaaacaaatatggggtaaggatcgcttcgaatttaag |
13086168 |
T |
|
| Q |
368 |
cctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagc |
429 |
Q |
| |
|
|| |||||||||||||| || | ||| ||||| | ||||||||||||| |||||||||||| |
|
|
| T |
13086167 |
cccgagagatggatatcagataaaggacatattttgcatgtaccatcttgcaagttcatagc |
13086106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 102 - 265
Target Start/End: Complemental strand, 19727479 - 19727316
Alignment:
| Q |
102 |
aagagatcaaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga |
201 |
Q |
| |
|
|||| ||||||||||| |||| ||||||||||| || | || | ||||| ||||||| ||||||||||||||| |||||||| |||| | ||||| | |
|
|
| T |
19727479 |
aagaaatcaaagataactggcccacacaagaggagaaccagactcctttgagagatgtggatcttgataagctagtgtacctccacggagatctatgtta |
19727380 |
T |
|
| Q |
202 |
aaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatacta |
265 |
Q |
| |
|
| |||| || |||||||||||| |||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
19727379 |
agccttgagactttatcctcctgtaccttttgagcatatatgtgcaatcaaatctcatatacta |
19727316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 135
Target Start/End: Original strand, 13244384 - 13244417
Alignment:
| Q |
102 |
aagagatcaaagataattggctaacacaagagga |
135 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
13244384 |
aagagatcaaagataattgtctaacacaagagga |
13244417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 418 - 492
Target Start/End: Original strand, 31380253 - 31380327
Alignment:
| Q |
418 |
caagttcatagctttcaacactggacccagaatttgtataggtaaagatcttagtttcattcaaatgatgatgtc |
492 |
Q |
| |
|
|||||||||| ||||||| || |||||| ||| |||||| |||||||||||||||||||||||||| | |||||| |
|
|
| T |
31380253 |
caagttcatatctttcaatacaggacccggaagttgtattggtaaagatcttagtttcattcaaattaagatgtc |
31380327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 36668368 - 36668314
Alignment:
| Q |
185 |
catggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcata |
239 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||| || |||||||||||||||| |
|
|
| T |
36668368 |
catggagctttatgtgaagccttaaggctttatccaccaataccttttgagcata |
36668314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 12164516 - 12164462
Alignment:
| Q |
185 |
catggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcata |
239 |
Q |
| |
|
||||||||| |||||||| |||| ||||||||||| || |||||||||||||||| |
|
|
| T |
12164516 |
catggagctttatgtgaagccttgaggctttatccgccgataccttttgagcata |
12164462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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