View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0253_low_34 (Length: 293)

Name: NF0253_low_34
Description: NF0253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0253_low_34
NF0253_low_34
[»] chr4 (12 HSPs)
chr4 (61-239)||(4218438-4218616)
chr4 (63-239)||(3801383-3801559)
chr4 (63-230)||(4009793-4009960)
chr4 (72-238)||(4002105-4002271)
chr4 (72-230)||(4025032-4025190)
chr4 (65-226)||(3919908-3920069)
chr4 (63-226)||(3817393-3817556)
chr4 (63-224)||(3986792-3986953)
chr4 (69-161)||(3955723-3955815)
chr4 (63-226)||(3933132-3933295)
chr4 (63-226)||(3809813-3809976)
chr4 (189-239)||(3954558-3954608)
[»] chr5 (1 HSPs)
chr5 (62-238)||(13397746-13397922)
[»] chr8 (2 HSPs)
chr8 (187-219)||(7030801-7030833)
chr8 (93-157)||(7081381-7081445)


Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 61 - 239
Target Start/End: Original strand, 4218438 - 4218616
Alignment:
Q  61 acatcatcatcatcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaata 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||| ||| ||||||||||||||||||||||||    
T  4218438 acatcatcatcatcaacttcattagcaataagtacttgcttatctctagatgttacaatgattctactatcggatcgaaaccaatcaagagttccaaata 4218537  T
Q  161 acatccttagcagatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatccttctatgaatatt 239  Q
    |||||  ||||||| ||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4218538 acatctctagcagaccttcttccttaatatcatcaagaacaataagaaccttcatacggtcaatccttctatgaatatt 4218616  T

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Target: chr4; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 63 - 239
Target Start/End: Original strand, 3801383 - 3801559
Alignment:
Q  63 atcatcatcatcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataac 162  Q
    |||||| ||||  |||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3801383 atcatcgtcatacacttcattaggaataagtacttgcttatctctacttgttacaattattctactatcagattgaaaccaatcaagagttccaaataac 3801482  T
Q  163 atccttagcagatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatccttctatgaatatt 239  Q
    |||  ||||||| ||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3801483 atctctagcagaccttcttccttaatatcatcaagatcaataagaaccttcatacggccaatccttctatgaatatt 3801559  T

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Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 63 - 230
Target Start/End: Original strand, 4009793 - 4009960
Alignment:
Q  63 atcatcatcatcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataac 162  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| |||||||||||||||||| |||||||    
T  4009793 atcatcatcttcaacttcattagcaataagtacttgcttatctctagttgttaaaattattctactatcggatcgaaaccaatcaagagttctaaataac 4009892  T
Q  163 atccttagcagatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatccttct 230  Q
    |||  |||| || ||| ||||| || |||||||||||||||||||||||||||||| |||||||||||    
T  4009893 atctctagctgaccttcttccttaacatcatcaagaacaataagaaccttcatacgaccaatccttct 4009960  T

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Target: chr4; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 72 - 238
Target Start/End: Original strand, 4002105 - 4002271
Alignment:
Q  72 atcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataacatccttagc 171  Q
    |||||||||||||| ||||||||||||||| ||||||||  |||||||||| |||||||| ||| |||||||||||||||||||||||||||||  ||      
T  4002105 atcaacttcattagtaataagtacttgcttgtctctagtcgttacaattatcctactatcggatcgaaaccaatcaagagttccaaataacatctctatt 4002204  T
Q  172 agatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatccttctatgaatat 238  Q
     || ||| ||||| || ||||||||||||||||||||||||||||||||||||| | || |||||||    
T  4002205 tgaccttcttccttaacatcatcaagaacaataagaaccttcatacggccaatcatcctctgaatat 4002271  T

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Target: chr4; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 72 - 230
Target Start/End: Original strand, 4025032 - 4025190
Alignment:
Q  72 atcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataacatccttagc 171  Q
    |||||||||||||  ||||||||||||| | ||||||||| | |||||||| |||||||||||| ||| ||||||||| |||||||||||||||  || |    
T  4025032 atcaacttcattacaaataagtacttgcatgtctctagttgtgacaattatcctactatcagatagaagccaatcaagtgttccaaataacatctctatc 4025131  T
Q  172 agatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatccttct 230  Q
     || ||| ||||| ||  ||||||||||||||||| |||||||||||||||||||||||    
T  4025132 tgaccttcttccttaacgtcatcaagaacaataaggaccttcatacggccaatccttct 4025190  T

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Target: chr4; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 3920069 - 3919908
Alignment:
Q  65 catcatcatcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataacat 164  Q
    |||||| ||||||||||||||   | ||||||||||||||||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3920069 catcatgatcaacttcattagtccttagtacttgcttatctctggatgttagaattattctactatcagattgaaaccaatcaagagttccaaataacat 3919970  T
Q  165 ccttagcagatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatcc 226  Q
    |   ||| ||||| | ||||  | |||||||||||| |||||||||||||| |||| |||||    
T  3919969 ctcgagctgatctgtctccttgacatcatcaagaacgataagaaccttcatgcggctaatcc 3919908  T

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Target: chr4; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 63 - 226
Target Start/End: Original strand, 3817393 - 3817556
Alignment:
Q  63 atcatcatcatcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataac 162  Q
    ||||||||| ||||||||||||    | ||||||||||||||||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3817393 atcatcatcttcaacttcattattccttagtacttgcttatctctggatgttagaattattctactatcagattgaaaccaatcaagagttccaaataac 3817492  T
Q  163 atccttagcagatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatcc 226  Q
    |||   ||| ||||| | ||||  | |||||||||||| |||||||||||||| |||| |||||    
T  3817493 atctcgagctgatctgtctccttgacatcatcaagaacgataagaaccttcatgcggctaatcc 3817556  T

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Target: chr4; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 63 - 224
Target Start/End: Original strand, 3986792 - 3986953
Alignment:
Q  63 atcatcatcatcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataac 162  Q
    ||||||||| |||||||||||| ||| |||||||||||||||||| | | ||| ||||||||||||||| ||||||||||| ||||||||| | ||||||    
T  3986792 atcatcatcgtcaacttcattatcaaaaagtacttgcttatctctggctgttagaattattctactatctgattgaaaccagtcaagagtttcgaataac 3986891  T
Q  163 atccttagcagatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaat 224  Q
    |||  |||| ||||||  |||| || |||||||||||  |||||||||||||| || |||||    
T  3986892 atctctagctgatcttcgtccttaacatcatcaagaatgataagaaccttcatgcgtccaat 3986953  T

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Target: chr4; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 69 - 161
Target Start/End: Complemental strand, 3955815 - 3955723
Alignment:
Q  69 atcatcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataa 161  Q
    ||||||||||||||||| ||||||||||||||| |||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3955815 atcatcaacttcattagtaataagtacttgcttgtctctaattgttacaattattctactatcagatcgaaaccaatcaagagttccaaataa 3955723  T

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Target: chr4; HSP #10
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 63 - 226
Target Start/End: Complemental strand, 3933295 - 3933132
Alignment:
Q  63 atcatcatcatcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataac 162  Q
    |||||||| |||||||||||| | || ||| |||||||||| |||| |  |||||||||||||||||||  || ||||||||||||||| ||||||||||    
T  3933295 atcatcattatcaacttcattggtaacaagcacttgcttatttctactggttacaattattctactatctaatcgaaaccaatcaagagatccaaataac 3933196  T
Q  163 atccttagcagatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatcc 226  Q
    |||  |||||||||| |||| |  | ||||||||||||||||||||| ||||| ||||| ||||    
T  3933195 atctctagcagatctgtttcattgacatcatcaagaacaataagaactttcatgcggccgatcc 3933132  T

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Target: chr4; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 63 - 226
Target Start/End: Original strand, 3809813 - 3809976
Alignment:
Q  63 atcatcatcatcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataac 162  Q
    |||||| | |||||||||||||||||||||||||||||||||||| | | ||| |||||||||||||||| ||||||||||||||  | ||||||||||     
T  3809813 atcatctttatcaacttcattagcaataagtacttgcttatctctggctgttaaaattattctactatcatattgaaaccaatcacaacttccaaataat 3809912  T
Q  163 atccttagcagatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatcc 226  Q
     |    ||| ||||| |  |||  |  ||||||||||| |||||||||||||| ||||||||||    
T  3809913 ttttccagctgatctgtacccttgacgtcatcaagaacgataagaaccttcatgcggccaatcc 3809976  T

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Target: chr4; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 3954608 - 3954558
Alignment:
Q  189 atcatcaagaacaataagaaccttcatacggccaatccttctatgaatatt 239  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3954608 atcatcaagaacaataagaaccttcatacggccaatccttctctgaatatt 3954558  T

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Target: chr5 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 62 - 238
Target Start/End: Original strand, 13397746 - 13397922
Alignment:
Q  62 catcatcatcatcaacttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataa 161  Q
    ||||||||||| ||||||||||||||||||||||||||||||| || ||| ||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  13397746 catcatcatcaacaacttcattagcaataagtacttgcttatccctggttgttataattattctactatcagatcgaaaccaatcaagagttccaaataa 13397845  T
Q  162 catccttagcagatctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatccttctatgaatat 238  Q
    ||||   ||| || ||| ||||  || |||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  13397846 catctccagctgaccttcttccgtaacatcatcaagaacaataagaaccttcatatggccaatccttctctgaatat 13397922  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 7030833 - 7030801
Alignment:
Q  187 atatcatcaagaacaataagaaccttcatacgg 219  Q
    ||||| |||||||||||||||||||||||||||    
T  7030833 atatcgtcaagaacaataagaaccttcatacgg 7030801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 157
Target Start/End: Original strand, 7081381 - 7081445
Alignment:
Q  93 tacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaa 157  Q
    ||||||||||||| ||||| ||||||| ||||||||| | | |  |||||||||||| |||||||    
T  7081381 tacttgcttatctttagttgttacaatgattctactacctgttccaaaccaatcaagtgttccaa 7081445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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