View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0253_low_35 (Length: 292)
Name: NF0253_low_35
Description: NF0253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0253_low_35 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 33 - 292
Target Start/End: Original strand, 55776214 - 55776458
Alignment:
| Q |
33 |
cctagttgtcaccttttatttattattgacatcatgtgagttgttagatcaaatcatcataaagattgagatttggtgagaagatgtgaattttagtcaa |
132 |
Q |
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| T |
55776214 |
cctagttgtcaccttttatttattattgacatcatgtgagttgttagatcaaatcatcataaagattgagatttggtgagaagatgtgaattttagtcaa |
55776313 |
T |
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| Q |
133 |
ttgtattagaaattgtgttgctagtattgctcttcctttgttttatatcgatttgcaaaaacacaaaaagagtaaaagtcacactgtatttcttcttatc |
232 |
Q |
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| T |
55776314 |
ttgtattagaaattgtgtt---------------cctttgttttatatcgatttgcaaaaacacaaaaagagtaaaagtcacactgtatttcttcttatc |
55776398 |
T |
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| Q |
233 |
tctatgcaacgtttttcttacatctcgaatcatatttctttcaaaatagtgtcttctatg |
292 |
Q |
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| T |
55776399 |
tctatgcaacgtttttcttacatctcgaatcatatttctttcaaaatagtgtcttctatg |
55776458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 33 - 292
Target Start/End: Original strand, 55840392 - 55840636
Alignment:
| Q |
33 |
cctagttgtcaccttttatttattattgacatcatgtgagttgttagatcaaatcatcataaagattgagatttggtgagaagatgtgaattttagtcaa |
132 |
Q |
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| T |
55840392 |
cctagttgtcaccttttatttattattgacatcatgtgagttgttagatcaaatcatcataaagattgagatttggtgagaagatgtgaattttagtcaa |
55840491 |
T |
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| Q |
133 |
ttgtattagaaattgtgttgctagtattgctcttcctttgttttatatcgatttgcaaaaacacaaaaagagtaaaagtcacactgtatttcttcttatc |
232 |
Q |
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| T |
55840492 |
ttgtattagaaattgtgtt---------------cctttgttttatatcgatttgcaaaaacacaaaaagagtaaaagtcacactgtatttcttcttatc |
55840576 |
T |
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| Q |
233 |
tctatgcaacgtttttcttacatctcgaatcatatttctttcaaaatagtgtcttctatg |
292 |
Q |
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| T |
55840577 |
tctatgcaacgtttttcttacatctcgaatcatatttctttcaaaatagtgtcttctatg |
55840636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 55775932 - 55775871
Alignment:
| Q |
46 |
ttttatttattattgacatcatgtgagttgttagatcaaatcatcataaagattgagatttg |
107 |
Q |
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| T |
55775932 |
ttttatttattattgacatcatatgaattgttagatcaaataattataacggttgagatttg |
55775871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 55840110 - 55840049
Alignment:
| Q |
46 |
ttttatttattattgacatcatgtgagttgttagatcaaatcatcataaagattgagatttg |
107 |
Q |
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| T |
55840110 |
ttttatttattattgacatcatatgaattgttagatcaaataattataacggttgagatttg |
55840049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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