View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0253_low_4 (Length: 542)
Name: NF0253_low_4
Description: NF0253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0253_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 18)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 102 - 527
Target Start/End: Complemental strand, 13161847 - 13161422
Alignment:
| Q |
102 |
aagagatcaaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13161847 |
aagagatcaaagataattggctaacacaagaggataatcggattattttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga |
13161748 |
T |
|
| Q |
202 |
aaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatactacctagtggagagcgtattagtccaaatacacgttta |
301 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
13161747 |
aaccttaaggctttatccacctataccttttgagcatatctgtgcaatcaaatccgatatactacctagtggagaacgtattagtccaaatacaagttta |
13161648 |
T |
|
| Q |
302 |
atgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatttaagcctgagagatggatatctgagaggggagatatta |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13161647 |
atgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatttaagcctgagagatggatatctgagaggggagatatta |
13161548 |
T |
|
| Q |
402 |
tacatgtaccatcttacaagttcatagctttcaacactggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgc |
501 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13161547 |
tacatgtaccttcttacaagttcatatctttcaacacaggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgc |
13161448 |
T |
|
| Q |
502 |
tttgttacggaagtttcacacacagg |
527 |
Q |
| |
|
|||||||||||||||||||| ||||| |
|
|
| T |
13161447 |
tttgttacggaagtttcacatacagg |
13161422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 102 - 527
Target Start/End: Complemental strand, 13094725 - 13094300
Alignment:
| Q |
102 |
aagagatcaaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga |
201 |
Q |
| |
|
||||||||| |||||||||| |||||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13094725 |
aagagatcagagataattggttaacacgagaggattatcggattactttgagggatgtggatcttgataagctagtatacctccatggagctatatgtga |
13094626 |
T |
|
| Q |
202 |
aaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatactacctagtggagagcgtattagtccaaatacacgttta |
301 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| | | | ||| |||||||||| |||| |
|
|
| T |
13094625 |
aaccttaaggctttatcctcctgtaccttttgagcatatctgtgcaatcaaatctgatatactacctagtggataccatgttactccaaatacaacttta |
13094526 |
T |
|
| Q |
302 |
atgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatttaagcctgagagatggatatctgagaggggagatatta |
401 |
Q |
| |
|
|| |||||| ||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13094525 |
atttactctttgtattctatgggaaggatggaacaaatatggggagaagactgcatggaatttaagcctgagagatggatatctgagaggggagatatta |
13094426 |
T |
|
| Q |
402 |
tacatgtaccatcttacaagttcatagctttcaacactggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgc |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13094425 |
tacatgtaccatcttacaagttcatagctttcaacacaggacccagaatttgtataggtaaagatattagtttcattcaaatgaagatggtcgcagctgc |
13094326 |
T |
|
| Q |
502 |
tttgttacggaagtttcacacacagg |
527 |
Q |
| |
|
|||||||||||||||||||| ||||| |
|
|
| T |
13094325 |
tttgttacggaagtttcacatacagg |
13094300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 102 - 527
Target Start/End: Complemental strand, 13130154 - 13129729
Alignment:
| Q |
102 |
aagagatcaaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga |
201 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13130154 |
aagagatcaaagataattggttaacacaagagggtaatcggattactttgaggcatgtggatcttgataagctagtatacctccatggagctatatgtga |
13130055 |
T |
|
| Q |
202 |
aaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatactacctagtggagagcgtattagtccaaatacacgttta |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| | | | |||||||||||||| ||| |
|
|
| T |
13130054 |
aaccttaaggctttatcctcctataccttttgagcatatctgttcaatcaaatctgatatactacctagtggataccatgttagtccaaatacaactttg |
13129955 |
T |
|
| Q |
302 |
atgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatttaagcctgagagatggatatctgagaggggagatatta |
401 |
Q |
| |
|
|| |||||| ||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13129954 |
atttactctttgtattctatgggaaggatggaacaaatatggggagaagactgcatggaatttaagcctgagagatggatatctgagaggggagatatta |
13129855 |
T |
|
| Q |
402 |
tacatgtaccatcttacaagttcatagctttcaacactggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgc |
501 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13129854 |
tacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgc |
13129755 |
T |
|
| Q |
502 |
tttgttacggaagtttcacacacagg |
527 |
Q |
| |
|
|||||||| ||||||||||| ||||| |
|
|
| T |
13129754 |
tttgttacagaagtttcacatacagg |
13129729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 110 - 527
Target Start/End: Original strand, 13070050 - 13070467
Alignment:
| Q |
110 |
aaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtgaaaccttaa |
209 |
Q |
| |
|
|||||||| |||| ||||||||||| |||| || | | ||| ||||||| ||||||||| ||||| ||||| ||||||||||||||||||||||| | |
|
|
| T |
13070050 |
aaagataactggcccacacaagaggagaatcagactccttggagagatgtggatcttgataatctagtgtaccttcatggagctatatgtgaaaccttga |
13070149 |
T |
|
| Q |
210 |
ggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatactacctagtggagagcgtattagtccaaatacacgtttaatgtactc |
309 |
Q |
| |
|
| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||| ||||||| |
|
|
| T |
13070150 |
gactttatcctcctgtaccttttgagcatatatgtgcaatcaaatccgatatactacctagtggagagcgtgttagtccaaatacaaggttattgtactc |
13070249 |
T |
|
| Q |
310 |
tatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatttaagcctgagagatggatatctgagaggggagatattatacatgta |
409 |
Q |
| |
|
| |||| ||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||| |||| ||| | ||||||||||| |
|
|
| T |
13070250 |
tttgtacgctatgggaaggatggaacaaatatggggagaagactgcatggaatttaagcctgagagatgggtatcagagacaggacacattatacatgtt |
13070349 |
T |
|
| Q |
410 |
ccatcttacaagttcatagctttcaacactggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttac |
509 |
Q |
| |
|
|||||||||||||||||||||||||| || || || |||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13070350 |
ccatcttacaagttcatagctttcaatacaggtccgagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttac |
13070449 |
T |
|
| Q |
510 |
ggaagtttcacacacagg |
527 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
13070450 |
agaagtttcacatacagg |
13070467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 102 - 521
Target Start/End: Complemental strand, 13204785 - 13204366
Alignment:
| Q |
102 |
aagagatcaaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga |
201 |
Q |
| |
|
|||| ||||||||||| || | ||||||||||| |||| |||| | ||| |||| | ||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
13204785 |
aagaaatcaaagataactgtcctacacaagaggagaatcagattccttcgagagatgagtatcttgataagctagtgtaccttcatggagctatatgtga |
13204686 |
T |
|
| Q |
202 |
aaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatactacctagtggagagcgtattagtccaaatacacgttta |
301 |
Q |
| |
|
| |||| || |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||| |
|
|
| T |
13204685 |
agccttgagactttatcctcctgtaccttttgagcatatatgtgcaatcaaatccgatatactacctagtggagagcgtgttagtccaaatacaaggtta |
13204586 |
T |
|
| Q |
302 |
atgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatttaagcctgagagatggatatctgagaggggagatatta |
401 |
Q |
| |
|
|||||||| |||| ||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||| |||| ||| | |||| |
|
|
| T |
13204585 |
ttgtactctttgtacgctatgggaaggatggaacaaatatggggagaagactgcatggaatttaagcctgagagatgggtatcagagacaggacacatta |
13204486 |
T |
|
| Q |
402 |
tacatgtaccatcttacaagttcatagctttcaacactggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgc |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || || || |||| |||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13204485 |
tacatgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgcagctgc |
13204386 |
T |
|
| Q |
502 |
tttgttacggaagtttcaca |
521 |
Q |
| |
|
|||||||| ||| ||||||| |
|
|
| T |
13204385 |
tttgttacagaattttcaca |
13204366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 102 - 527
Target Start/End: Complemental strand, 13101326 - 13100902
Alignment:
| Q |
102 |
aagagatcaaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga |
201 |
Q |
| |
|
|||| ||||||||||| || | ||||||||||| |||| |||| | ||| |||| | ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13101326 |
aagaaatcaaagataactgtcctacacaagaggagaatcagattccttcgagagatgagtatcttgataagctagtgtacctccatggagctatatgtga |
13101227 |
T |
|
| Q |
202 |
aaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatactacctagtggagagcgtattagtccaaatacacgttta |
301 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| |||||||||||||| | ||| |
|
|
| T |
13101226 |
aaccttgaggctttatcctcctgtaccttttgagcatatatgttcaatcaaatccgatatacttcctagtggagagcgttttagtccaaatacaaggtta |
13101127 |
T |
|
| Q |
302 |
atgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatttaagcctgagagatggatatctgagaggggagatatta |
401 |
Q |
| |
|
|||||||| |||| ||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| | || ||||| ||| | |||| |
|
|
| T |
13101126 |
ttgtactctttgtacgctatgggaaggatggaacaaatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacatta |
13101027 |
T |
|
| Q |
402 |
tacatgtaccatcttacaagttcatagctttcaacactggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgc |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||| |||| |||||| ||||| ||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
13101026 |
tacatgtaccatcttacaagttcatagctttcaa-tcaggacctagaagttgtatgggtaaggatattagcttcattcaaatgaagatggtcgcagctgc |
13100928 |
T |
|
| Q |
502 |
tttgttacggaagtttcacacacagg |
527 |
Q |
| |
|
|||||||| ||||||||||| ||||| |
|
|
| T |
13100927 |
tttgttaccgaagtttcacatacagg |
13100902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 102 - 521
Target Start/End: Complemental strand, 13007526 - 13007107
Alignment:
| Q |
102 |
aagagatcaaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga |
201 |
Q |
| |
|
|||| ||||||||||| |||| ||||||||||| |||| || | ||||| ||||||| ||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
13007526 |
aagaaatcaaagataactggcccacacaagaggagaatcagactcctttgagagatgtggatcttgataagctagtgtacctccatggagctctatgtga |
13007427 |
T |
|
| Q |
202 |
aaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatactacctagtggagagcgtattagtccaaatacacgttta |
301 |
Q |
| |
|
| || | ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| | ||| |
|
|
| T |
13007426 |
agccatgaggctttatcctcctgtaccttttgagcatatctgtgcaatcaattccgatatactacctagtggagagcgtgttagtccaaatacaaggtta |
13007327 |
T |
|
| Q |
302 |
atgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatttaagcctgagagatggatatctgagaggggagatatta |
401 |
Q |
| |
|
|||||||| |||| ||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| | || ||||| ||| | |||| |
|
|
| T |
13007326 |
ttgtactctttgtacgctatgggaaggatggaacaaatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacatta |
13007227 |
T |
|
| Q |
402 |
tacatgtaccatcttacaagttcatagctttcaacactggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgc |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || || || |||| |||||| || || ||| |||| |||||||||||||||||||||||||| || |
|
|
| T |
13007226 |
tacatgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggtcgcagcagc |
13007127 |
T |
|
| Q |
502 |
tttgttacggaagtttcaca |
521 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
13007126 |
tttgttaccaaagtttcaca |
13007107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 164 - 527
Target Start/End: Original strand, 30368036 - 30368399
Alignment:
| Q |
164 |
cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatac |
263 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| || | ||| | |||||| || |||||||||||| |||| ||||||||||||| ||||||| |
|
|
| T |
30368036 |
cttgataagctagtctacctccatggagctatatgtgaatccatgaggttgtatcctactgtaccttttgagcttatcagtgcaatcaaatctgatatac |
30368135 |
T |
|
| Q |
264 |
tacctagtggagagcgtattagtccaaatacacgtttaatgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatt |
363 |
Q |
| |
|
|||||||||||||| | ||||||||||||| ||||| |||||| ||||| ||||||| ||||||||| || ||||||| ||||| ||||||||||| |
|
|
| T |
30368136 |
tacctagtggagagaatgttagtccaaataccaagttaatttactctttgtatgctatgggaaggatggaaaaaatatggggagaagattgcatggaatt |
30368235 |
T |
|
| Q |
364 |
taagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagctttcaacactggacccagaatttgtataggtaaa |
463 |
Q |
| |
|
|||||||||||||||| |||| ||||| ||| | |||||||||||||||||||||||||||||||||||||| || ||||| |||| |||||| |||||| |
|
|
| T |
30368236 |
taagcctgagagatgggtatcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaatacaggacctagaagttgtatgggtaaa |
30368335 |
T |
|
| Q |
464 |
gatcttagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacacacagg |
527 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||| |||||| |||||||||||| ||||| |
|
|
| T |
30368336 |
gatcttagtttcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacagg |
30368399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 164 - 527
Target Start/End: Original strand, 19279096 - 19279459
Alignment:
| Q |
164 |
cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatac |
263 |
Q |
| |
|
|||||||||||||| || || |||||||||||||||||| |||||||||||||||| ||| |||| ||||| || | |||||| | || |||||||||| |
|
|
| T |
19279096 |
cttgataagctagtttatcttcatggagctatatgtgaagccttaaggctttatccacctgtaccatttgaacacaagtgtgcagttaattccgatatac |
19279195 |
T |
|
| Q |
264 |
tacctagtggagagcgtattagtccaaatacacgtttaatgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatt |
363 |
Q |
| |
|
||||||||||||| | | |||||| ||||||| ||||| |||||| ||||| | ||||| |||||||||||| ||||||| || || ||| | ||||| |
|
|
| T |
19279196 |
tacctagtggagaccatgttagtctaaatacaaagttaatatactctttgtatgcaatgggaaggatggaacaaatatggggtgatgattgcctagaatt |
19279295 |
T |
|
| Q |
364 |
taagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagctttcaacactggacccagaatttgtataggtaaa |
463 |
Q |
| |
|
| |||||||||||||||||| || || ||| | ||||||||||||||||| |||||||||||||| || || | || || |||| ||| | || ||| |
|
|
| T |
19279296 |
tcggcctgagagatggatatcggatagaggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaa |
19279395 |
T |
|
| Q |
464 |
gatcttagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacacacagg |
527 |
Q |
| |
|
||| ||| |||| |||||||||| ||||| ||||||||| | ||| ||||||||| || ||||| |
|
|
| T |
19279396 |
gatattactttccttcaaatgaaaatggttgcagctgctgtattatggaagtttcgcatacagg |
19279459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 165 - 527
Target Start/End: Original strand, 13244450 - 13244812
Alignment:
| Q |
165 |
ttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatact |
264 |
Q |
| |
|
|||||||||| || ||||| |||||||| |||||||||||||| ||||| ||||||||| | | ||| |||| | || || |||||||| |||||||| |
|
|
| T |
13244450 |
ttgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctcctctggcatttcagcacaagtgcgctatcaaatctgatatact |
13244549 |
T |
|
| Q |
265 |
acctagtggagagcgtattagtccaaatacacgtttaatgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaattt |
364 |
Q |
| |
|
|||||||||||| | | || ||||||||||| || || || ||| ||||| | ||||| |||||| ||||| ||||||| || || ||| |||||||| |
|
|
| T |
13244550 |
acctagtggagaacatgttggtccaaatacaaagttgatatattctttgtatgcaatgggaaggatgcaacaaatatggggagatgattgcttggaattt |
13244649 |
T |
|
| Q |
365 |
aagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagctttcaacactggacccagaatttgtataggtaaag |
464 |
Q |
| |
|
|||||||| ||||||||||| | || |||| |||||| ||||||| ||||||||||||||||||||||| | || || |||| |||||| || |||| |
|
|
| T |
13244650 |
aagcctgaaagatggatatcagctagaggagggattataaatgtaccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaag |
13244749 |
T |
|
| Q |
465 |
atcttagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacacacagg |
527 |
Q |
| |
|
||||||| ||| |||||||||| ||||| |||||| |||||||| ||||||||| || ||||| |
|
|
| T |
13244750 |
atcttagcttcgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacagg |
13244812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 164 - 435
Target Start/End: Original strand, 13065141 - 13065412
Alignment:
| Q |
164 |
cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatac |
263 |
Q |
| |
|
|||||||| ||| | |||||||| ||||||||||||||| |||||||||||||||||||| ||||| | ||||| | | |||||||||| | ||||||| |
|
|
| T |
13065141 |
cttgataaactaatttacctccacggagctatatgtgaagccttaaggctttatcctcctgtacctatcgagcaaaagtttgcaatcaaagctgatatac |
13065240 |
T |
|
| Q |
264 |
tacctagtggagagcgtattagtccaaatacacgtttaatgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatt |
363 |
Q |
| |
|
| |||||||||| | | | |||||||||||| | || | |||| | ||||||| ||||| |||||||| || ||||||| ||||||||||||||||| |
|
|
| T |
13065241 |
ttcctagtggagtccatgtaagtccaaatacaaggatattatactatttgtattcaatgggaaggatggagaaaatatggggagaagactgcatggaatt |
13065340 |
T |
|
| Q |
364 |
taagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagctttcaa |
435 |
Q |
| |
|
||||||||||||||||||||| | || ||| | |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13065341 |
taagcctgagagatggatatcaaaaagcggacaaattatacatgtaccgtcttacaagttcatagctttcaa |
13065412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 164 - 521
Target Start/End: Original strand, 12963803 - 12964160
Alignment:
| Q |
164 |
cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatac |
263 |
Q |
| |
|
||||||||||| || || || ||||||||||| |||||| | ||||||||||||||||||||||| ||||| || | |||||||| ||||| |||||| |
|
|
| T |
12963803 |
cttgataagcttgtttatcttcatggagctatttgtgaagctttaaggctttatcctcctataccatttgaacacaagtgtgcaattaaatcagatatat |
12963902 |
T |
|
| Q |
264 |
tacctagtggagagcgtattagtccaaatacacgtttaatgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatt |
363 |
Q |
| |
|
||||||||||||| | | |||||||||||||| || || || ||| ||||| | ||||| |||||||||||| ||||||| ||||| ||| ||||||| |
|
|
| T |
12963903 |
tacctagtggagaccatgttagtccaaatacaaagttgatatattctttgtatgcaatgggaaggatggaacaaatatggggagaagattgcttggaatt |
12964002 |
T |
|
| Q |
364 |
taagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagctttcaacactggacccagaatttgtataggtaaa |
463 |
Q |
| |
|
||||||||| ||||||||||| | || ||||| |||||||| || |||||||| ||||||||||| ||||| | || || |||| |||||| || ||| |
|
|
| T |
12964003 |
taagcctgaaagatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaatgcaggtcctagaagttgtattgggaaa |
12964102 |
T |
|
| Q |
464 |
gatcttagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcaca |
521 |
Q |
| |
|
||| |||| || |||||||||| ||||| || ||| | |||| |||||||||||| |
|
|
| T |
12964103 |
gatattagctttgttcaaatgaaaatggttgctgctaatgtgttgtggaagtttcaca |
12964160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 165 - 521
Target Start/End: Complemental strand, 13271849 - 13271493
Alignment:
| Q |
165 |
ttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatact |
264 |
Q |
| |
|
|||||||||| | ||||| |||| |||||||||||||||||| || ||||||||||||||||| ||||| || | |||||| | || || |||||||| |
|
|
| T |
13271849 |
ttgataagctgatttaccttcatgcagctatatgtgaaaccttgagactttatcctcctataccatttgatcacaagtgtgcagttaattctgatatact |
13271750 |
T |
|
| Q |
265 |
acctagtggagagcgtattagtccaaatacacgtttaatgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaattt |
364 |
Q |
| |
|
|||||||||| | | | || ||||||| ||| ||||| |||||| ||||| | ||||| || |||||||| ||||||| | || ||| |||| ||| |
|
|
| T |
13271749 |
acctagtggacaccatgttggtccaaacacaaagttaatatactctttgtatgcaatgggaagaatggaacatgtatggggtggtgattgcttggagttt |
13271650 |
T |
|
| Q |
365 |
aagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagctttcaacactggacccagaatttgtataggtaaag |
464 |
Q |
| |
|
|||||||||||||||||||| || | ||| | |||||||||||||||||||||||||||||||| ||||| | || || |||| ||| | || |||| |
|
|
| T |
13271649 |
aagcctgagagatggatatcagataaaggacaaattatacatgtaccatcttacaagttcatagcattcaatgcaggtcctagaagctgtcttgggaaag |
13271550 |
T |
|
| Q |
465 |
atcttagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcaca |
521 |
Q |
| |
|
|| |||| || ||||||||||| ||||| |||||| || | ||| |||||||||||| |
|
|
| T |
13271549 |
atattagctttattcaaatgaaaatggttgcagcttctgtattatggaagtttcaca |
13271493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 164 - 501
Target Start/End: Original strand, 13080793 - 13081130
Alignment:
| Q |
164 |
cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatac |
263 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||||||||| |||||||||| |||||| || || | ||| |||| | ||||| |||||||| |||| || |
|
|
| T |
13080793 |
cttgataagctagtttaccttcatggagccatatgtgaagccttaaggctatatccttctgtagcatttcagcacaagtgtgctatcaaatcggataaac |
13080892 |
T |
|
| Q |
264 |
tacctagtggagagcgtattagtccaaatacacgtttaatgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatt |
363 |
Q |
| |
|
| ||||||||||| | | |||||||||||||| ||||| || ||| ||||| | ||||| |||||||| ||| ||||||| || || ||| |||| || |
|
|
| T |
13080893 |
ttcctagtggagaccatgttagtccaaatacaaagttaatatattctttgtatgcaatgggaaggatggagcaaatatggggagaggattgcttggagtt |
13080992 |
T |
|
| Q |
364 |
taagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagctttcaacactggacccagaatttgtataggtaaa |
463 |
Q |
| |
|
||||||||||||||||||||| || || ||| | |||||||| || || ||||| ||||||||||| || || | || || |||| ||| | || ||| |
|
|
| T |
13080993 |
taagcctgagagatggatatcagatagaggacaaattatacaagtgccgtcttataagttcatagcgtttaatgcaggtccaagaagctgtcttgggaaa |
13081092 |
T |
|
| Q |
464 |
gatcttagtttcattcaaatgaagatggtcgcagctgc |
501 |
Q |
| |
|
||| ||||||| |||||||||| ||||| |||||||| |
|
|
| T |
13081093 |
gatattagttttcttcaaatgaaaatggttgcagctgc |
13081130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 168 - 521
Target Start/End: Complemental strand, 13086367 - 13086014
Alignment:
| Q |
168 |
ataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatactacc |
267 |
Q |
| |
|
|||| ||||| ||||| |||||||||||||||||| | || ||||||||||||||| |||| ||| |||| | |||||||||||| | ||||||||||| |
|
|
| T |
13086367 |
ataaactagtgtaccttcatggagctatatgtgaagcattgaggctttatcctcctgtaccatttcagcacaagtgtgcaatcaaagctgatatactacc |
13086268 |
T |
|
| Q |
268 |
tagtggagagcgtattagtccaaatacacgtttaatgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatttaag |
367 |
Q |
| |
|
||||||||| | ||| |||||||| ||||| |||||| ||||| | ||||| |||||| ||||| ||||||| | || || | ||||||||| |
|
|
| T |
13086267 |
tagtggagattatgttaaaccaaatactaagttaatatactctttgtatgcaatgggaaggatgaaacaaatatggggtaaggatcgcttcgaatttaag |
13086168 |
T |
|
| Q |
368 |
cctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagctttcaacactggacccagaatttgtataggtaaagatc |
467 |
Q |
| |
|
|| |||||||||||||| || | ||| ||||| | ||||||||||||| |||||||||||| || || | || || ||| |||| | || |||||| |
|
|
| T |
13086167 |
cccgagagatggatatcagataaaggacatattttgcatgtaccatcttgcaagttcatagcatttaatgcaggtcctcgaagttgtcttgggaaagata |
13086068 |
T |
|
| Q |
468 |
ttagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcaca |
521 |
Q |
| |
|
|||| | |||||||||| ||||| ||||||||| ||||| |||||||||||| |
|
|
| T |
13086067 |
ttagcattgttcaaatgaaaatggttgcagctgctatgttatggaagtttcaca |
13086014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 102 - 265
Target Start/End: Complemental strand, 19727479 - 19727316
Alignment:
| Q |
102 |
aagagatcaaagataattggctaacacaagaggataatcggattatcttgagggatgtggttcttgataagctagtatacctccatggagctatatgtga |
201 |
Q |
| |
|
|||| ||||||||||| |||| ||||||||||| || | || | ||||| ||||||| ||||||||||||||| |||||||| |||| | ||||| | |
|
|
| T |
19727479 |
aagaaatcaaagataactggcccacacaagaggagaaccagactcctttgagagatgtggatcttgataagctagtgtacctccacggagatctatgtta |
19727380 |
T |
|
| Q |
202 |
aaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatacta |
265 |
Q |
| |
|
| |||| || |||||||||||| |||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
19727379 |
agccttgagactttatcctcctgtaccttttgagcatatatgtgcaatcaaatctcatatacta |
19727316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 462 - 518
Target Start/End: Complemental strand, 13010739 - 13010683
Alignment:
| Q |
462 |
aagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttc |
518 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||| |||| |||| |
|
|
| T |
13010739 |
aagatcttagtttcattctaatgaagatggtcgcagctgatttgttatggaaatttc |
13010683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 135
Target Start/End: Original strand, 13244384 - 13244417
Alignment:
| Q |
102 |
aagagatcaaagataattggctaacacaagagga |
135 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
13244384 |
aagagatcaaagataattgtctaacacaagagga |
13244417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 418 - 490
Target Start/End: Original strand, 31380253 - 31380325
Alignment:
| Q |
418 |
caagttcatagctttcaacactggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatg |
490 |
Q |
| |
|
|||||||||| ||||||| || |||||| ||| |||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
31380253 |
caagttcatatctttcaatacaggacccggaagttgtattggtaaagatcttagtttcattcaaattaagatg |
31380325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 36668368 - 36668314
Alignment:
| Q |
185 |
catggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcata |
239 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||| || |||||||||||||||| |
|
|
| T |
36668368 |
catggagctttatgtgaagccttaaggctttatccaccaataccttttgagcata |
36668314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 12164516 - 12164462
Alignment:
| Q |
185 |
catggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcata |
239 |
Q |
| |
|
||||||||| |||||||| |||| ||||||||||| || |||||||||||||||| |
|
|
| T |
12164516 |
catggagctttatgtgaagccttgaggctttatccgccgataccttttgagcata |
12164462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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