View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0253_low_41 (Length: 251)

Name: NF0253_low_41
Description: NF0253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0253_low_41
NF0253_low_41
[»] chr2 (8 HSPs)
chr2 (1-246)||(42827703-42827949)
chr2 (3-197)||(22059651-22059845)
chr2 (29-162)||(31559070-31559203)
chr2 (3-60)||(44820126-44820183)
chr2 (3-60)||(10344793-10344850)
chr2 (3-58)||(42930080-42930135)
chr2 (12-73)||(5694991-5695052)
chr2 (13-121)||(5695954-5696062)
[»] chr7 (4 HSPs)
chr7 (1-246)||(41385233-41385480)
chr7 (87-194)||(707657-707764)
chr7 (87-189)||(28557065-28557167)
chr7 (25-73)||(5975288-5975336)
[»] chr6 (8 HSPs)
chr6 (1-246)||(19597405-19597650)
chr6 (2-246)||(19581011-19581253)
chr6 (3-244)||(7799652-7799895)
chr6 (3-246)||(19401561-19401806)
chr6 (23-194)||(1134472-1134642)
chr6 (3-60)||(20772652-20772709)
chr6 (3-60)||(12600250-12600307)
chr6 (3-57)||(843175-843229)
[»] scaffold0129 (1 HSPs)
scaffold0129 (3-197)||(3745-3939)
[»] chr1 (7 HSPs)
chr1 (3-197)||(31815258-31815452)
chr1 (3-91)||(8323032-8323120)
chr1 (3-60)||(42300810-42300867)
chr1 (3-60)||(52794061-52794118)
chr1 (29-133)||(9419362-9419466)
chr1 (87-136)||(7384449-7384498)
chr1 (85-174)||(23573247-23573336)
[»] chr3 (11 HSPs)
chr3 (107-246)||(31200053-31200193)
chr3 (11-190)||(5386716-5386895)
chr3 (11-247)||(5385972-5386210)
chr3 (23-162)||(16196464-16196604)
chr3 (29-162)||(34594636-34594769)
chr3 (3-58)||(24612627-24612682)
chr3 (12-79)||(55197936-55198003)
chr3 (13-63)||(25529529-25529579)
chr3 (1-44)||(31199633-31199676)
chr3 (29-126)||(1677365-1677462)
chr3 (23-79)||(1678354-1678410)
[»] chr4 (13 HSPs)
chr4 (26-190)||(28427270-28427434)
chr4 (6-60)||(55019010-55019064)
chr4 (3-60)||(38158273-38158330)
chr4 (3-58)||(23703530-23703585)
chr4 (3-58)||(35785520-35785575)
chr4 (13-121)||(2671912-2672021)
chr4 (12-71)||(2672616-2672675)
chr4 (3-58)||(4907119-4907174)
chr4 (3-58)||(4932988-4933043)
chr4 (31-174)||(13507131-13507273)
chr4 (115-174)||(13507976-13508035)
chr4 (3-58)||(29756621-29756676)
chr4 (85-135)||(42225787-42225837)
[»] scaffold0060 (1 HSPs)
scaffold0060 (3-60)||(12893-12950)
[»] chr8 (6 HSPs)
chr8 (92-194)||(36900324-36900426)
chr8 (3-58)||(358967-359022)
chr8 (3-73)||(27410150-27410221)
chr8 (88-174)||(17706976-17707061)
chr8 (3-57)||(21143675-21143729)
chr8 (23-73)||(37964246-37964296)
[»] scaffold0140 (1 HSPs)
scaffold0140 (85-174)||(35941-36030)
[»] chr5 (3 HSPs)
chr5 (4-60)||(13374122-13374178)
chr5 (17-63)||(41282674-41282720)
chr5 (13-61)||(41284083-41284131)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 42827703 - 42827949
Alignment:
Q  1 ctcccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattat 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42827703 ctcccttgaaccaaaactcatctccttcaacaatgtcttctaattccattactcaatcatcatccaatgagttacctatgtgcggttgcaacaaaattat 42827802  T
Q  101 gagaatgttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaatactttgttgttctc 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42827803 gagaatgttcatatccaattcacttgacaaccctaaaaggagatattggaaatacacaacctatatggtgagtttgctgttgtaatactttgttgttctc 42827902  T
Q  201 tta-tttttcacattttaattagctgaatatatttgttttcatctca 246  Q
    ||| ||||||||||||||||||||| ||||| |||||||||||||||    
T  42827903 ttattttttcacattttaattagctaaatatgtttgttttcatctca 42827949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 3 - 197
Target Start/End: Complemental strand, 22059845 - 22059651
Alignment:
Q  3 cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatga 102  Q
    |||| ||||||||| |  |||| |||||||||||||||||| ||||  |||||| ||||||| |||| ||||||||||||  ||||||||||||| ||||    
T  22059845 ccctagaaccaaaaactttctctttcaacaatgtcttctaattccaaaactcaaccatcatcaaatgggttacctatgtgtggttgcaacaaaatcatga 22059746  T
Q  103 gaatgttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaatactttgttgtt 197  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22059745 gaatgttcatatccaattcacatgaaaaccctaaaaggagatactggaaatgcccaacctatatggtgagtttgctgttgtaatactttgttgtt 22059651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 162
Target Start/End: Complemental strand, 31559203 - 31559070
Alignment:
Q  29 aacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatgagaatgttcatatccaattcacttgaa 128  Q
    ||||||||||||| | |||||| ||||||||||||| | |||||| ||||| ||  ||||||||||||| ||||| |||||||| ||||||| |  | |     
T  31559203 aacaatgtcttctcattccatttctcaatcatcatcaattgagttgcctatatgtggttgcaacaaaataatgaggatgttcatctccaatttatattac 31559104  T
Q  129 aaccctaaaaggagatattggaaatacccaacct 162  Q
    |||||||||| |||||||||||||| ||||||||    
T  31559103 aaccctaaaacgagatattggaaatgcccaacct 31559070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 44820126 - 44820183
Alignment:
Q  3 cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcat 60  Q
    ||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||||    
T  44820126 cccttgaaccaaaacccatatccttcaacaatttattctaattccattactcaatcat 44820183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 10344850 - 10344793
Alignment:
Q  3 cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcat 60  Q
    ||||||||||||||||||| |||||||||||| | |||||| || |||||||||||||    
T  10344850 cccttgaaccaaaacccatatccttcaacaatttattctaattctattactcaatcat 10344793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 42930135 - 42930080
Alignment:
Q  3 cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatc 58  Q
    ||||||||||||||||||| |||||||||||| | |||||| | ||||||||||||    
T  42930135 cccttgaaccaaaacccatatccttcaacaatttattctaatttcattactcaatc 42930080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 5694991 - 5695052
Alignment:
Q  12 caaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagtt 73  Q
    |||| ||||| ||||||||||||||||||| | |||||| |||| |||||||| ||||||||    
T  5694991 caaaccccatttccttcaacaatgtcttctcattccatttctcattcatcatcaaatgagtt 5695052  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 121
Target Start/End: Complemental strand, 5696062 - 5695954
Alignment:
Q  13 aaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatgagaatgttcat 112  Q
    ||||||||| || || |||||||| |||| | ||||||  |||||||||||| |||||||| || || ||  ||||||  | ||||||||| ||||||||    
T  5696062 aaaacccatttcattgaacaatgtattctcattccatttgtcaatcatcatcaaatgagttgccaatatgtggttgcagaacaattatgaggatgttcat 5695963  T
Q  113 atccaattc 121  Q
     | ||||||    
T  5695962 cttcaattc 5695954  T

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Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 41385480 - 41385233
Alignment:
Q  1 ctcccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattat 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  41385480 ctcccttgaaccaaaactcatctccttcaacaatgtcttctaattccattactcaatcatcatccaatgagttacctatgtgtggttgcaacaaaattat 41385381  T
Q  101 gagaatgttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaatactttgttgttctc 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  41385380 gagaatgttcatatccaattcacttgacaaccctaaaaggagatattggaaatacccaacctatattgtgagtttgctgttgtaatactttgttgctctc 41385281  T
Q  201 ttat--ttttcacattttaattagctgaatatatttgttttcatctca 246  Q
    ||||  ||||||| |||||||||||||||||| |||||||||||||||    
T  41385280 ttatttttttcactttttaattagctgaatatgtttgttttcatctca 41385233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 194
Target Start/End: Complemental strand, 707764 - 707657
Alignment:
Q  87 tgcaacaaaattatgagaatgttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaat 186  Q
    ||||||||||| || || |||||||| ||||||| |  |||||||||||||||||||||||||||||  ||||||| || |||| ||| | |||| ||||    
T  707764 tgcaacaaaatcataaggatgttcatctccaatttaaatgaaaaccctaaaaggagatattggaaatgtccaacctttacggtgtgttcgttgttataat 707665  T
Q  187 actttgtt 194  Q
    ||| ||||    
T  707664 actatgtt 707657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 189
Target Start/End: Complemental strand, 28557167 - 28557065
Alignment:
Q  87 tgcaacaaaattatgagaatgttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaat 186  Q
    ||||||||||| || || |||||||| ||||||| |  |||||| ||||||||||||||||||||||  ||||||| || |||||||| | |||| ||||    
T  28557167 tgcaacaaaatcataaggatgttcatctccaatttaaatgaaaatcctaaaaggagatattggaaatgtccaacctttacggtgagttcgttgttataat 28557068  T
Q  187 act 189  Q
    |||    
T  28557067 act 28557065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 5975336 - 5975288
Alignment:
Q  25 cttcaacaatgtcttctaactccattactcaatcatcatccaatgagtt 73  Q
    ||||||||||||||||| | ||||||  |||||||||||| ||||||||    
T  5975336 cttcaacaatgtcttctcagtccatttgtcaatcatcatcaaatgagtt 5975288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 19597650 - 19597405
Alignment:
Q  1 ctcccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  19597650 ctcccttgaaccaaaacccatctccttcaacaatgtcttctaattccattactcaatcatcatccaatgagttacctatgtgtggttgcaacaaaattat 19597551  T
Q  101 gagaatgttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaatactttgttgttctc 200  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19597550 gagaatgttcatatccaattcagttgacaaccctaaaaggagatattgaaaatacccaacctatatggtgagtttgctgttgtaatactttgttattctc 19597451  T
Q  201 ttattttt-cacattttaattagctgaatatatttgttttcatctca 246  Q
    |||||||| |||||||||||||||||||||| ||| |||||||||||    
T  19597450 ttatttttgcacattttaattagctgaatatgttt-ttttcatctca 19597405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 2 - 246
Target Start/End: Complemental strand, 19581253 - 19581011
Alignment:
Q  2 tcccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatg 101  Q
    ||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||| | ||||   ||  ||||||||||||    
T  19581253 tcccttgaaccaaaacccatctccttcaacaatatcttctaattctattactcaatcatcatccaatgagttacatgtgtgatttt--aacaaaattatg 19581156  T
Q  102 agaatgttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaatactttgttgttctct 201  Q
    ||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  19581155 agaatgttcatatccaattcaattgacaactctaaaaggagatattggaaatacccaacctgtatggttagtttgctgttgtaatactttgttgttctct 19581056  T
Q  202 tattttt-cacattttaattagctgaatatatttgttttcatctca 246  Q
    ||||||| |||||||||||||| ||||||| ||| |||||||||||    
T  19581055 tatttttgcacattttaattagttgaatatgttt-ttttcatctca 19581011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 3 - 244
Target Start/End: Complemental strand, 7799895 - 7799652
Alignment:
Q  3 cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatga 102  Q
    |||| ||||||||| | ||||| |||||||||||||||||| ||||| |||||| ||||||| |||| ||||||||||||  ||||||||||||| ||||    
T  7799895 ccctagaaccaaaaactatctctttcaacaatgtcttctaattccataactcaaccatcatcaaatgggttacctatgtgtggttgcaacaaaatcatga 7799796  T
Q  103 gaatgttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaatactttgttg-ttctct 201  Q
     |||||||||||||||||||  || |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| || |||    
T  7799795 aaatgttcatatccaattcaagtgcaaaccctaaaaggagatactggaaatgcccaacctatatggtgagtttgctgttgtaatactttgttgtttttct 7799696  T
Q  202 tatttt-tcacattttaattagctgaatatatttgttttcatct 244  Q
    ||||||  |||||||||||||| || |||| |||||||||||||    
T  7799695 tattttcgcacattttaattagttggatatgtttgttttcatct 7799652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 3 - 246
Target Start/End: Complemental strand, 19401806 - 19401561
Alignment:
Q  3 cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatga 102  Q
    |||| ||||||||| | ||||| |||||||||||||||||| ||||| |||||| ||||||| |||| ||||||||||||  ||||||||||||| ||||    
T  19401806 ccctagaaccaaaaactatctctttcaacaatgtcttctaattccataactcaaccatcatcaaatgggttacctatgtgtggttgcaacaaaatcatga 19401707  T
Q  103 gaatgttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaatactttgttg-ttctct 201  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||| || ||| ||||||||||| || ||||||||||||||||||| || |||    
T  19401706 gaatgttcatatccaattcacgtgaaaaccctaaaaggagatactggaaatgccaaacttatatggtgaggtttctgttgtaatactttgttgtttttct 19401607  T
Q  202 tatttt-tcacattttaattagctgaatatatttgttttcatctca 246  Q
    ||||||  |||||| |||||||||| |||| |||||||||||||||    
T  19401606 tattttcgcacattataattagctgtatatgtttgttttcatctca 19401561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 23 - 194
Target Start/End: Original strand, 1134472 - 1134642
Alignment:
Q  23 tccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatgagaatgttcatatccaattca 122  Q
    ||||||||||||||||||| | ||||||  |||||||||||| ||| |||| ||||| ||  ||||||| ||||||||||| |||||||| |||||||||    
T  1134472 tccttcaacaatgtcttctcattccatttgtcaatcatcatcaaatcagttgcctatatgtggttgcaaaaaaattatgaggatgttcatctccaattca 1134571  T
Q  123 cttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaatactttgtt 194  Q
    | ||| || ||||||| |||||||||||||| |||||||| |||||||| | || |||| ||||| ||||||    
T  1134572 catgacaa-cctaaaaagagatattggaaatgcccaacctttatggtgaatgtgttgttataatagtttgtt 1134642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 20772652 - 20772709
Alignment:
Q  3 cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcat 60  Q
    ||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||||    
T  20772652 cccttgaaccaaaacccatatccttcaacaatttattctaattccattactcaatcat 20772709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 12600250 - 12600307
Alignment:
Q  3 cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcat 60  Q
    ||||||||||||||| ||| |||||||||||| | |||||| ||||| ||||||||||    
T  12600250 cccttgaaccaaaactcatatccttcaacaatttattctaattccatcactcaatcat 12600307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 843229 - 843175
Alignment:
Q  3 cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaat 57  Q
    ||||| ||||||||||||| |||||||||||| | |||||| ||||||| |||||    
T  843229 cccttaaaccaaaacccatatccttcaacaatttattctaattccattagtcaat 843175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 3 - 197
Target Start/End: Complemental strand, 3939 - 3745
Alignment:
Q  3 cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatga 102  Q
    |||| ||||||||| | ||||| |||||||||||||||||| ||||| |||||| ||||||| |||| ||||||||||||  ||||||||||||| ||||    
T  3939 ccctagaaccaaaaactatctctttcaacaatgtcttctaattccataactcaaccatcatcaaatgggttacctatgtgtggttgcaacaaaatcatga 3840  T
Q  103 gaatgttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaatactttgttgtt 197  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3839 gaatgttcatatccaattcacatgaaaaccctaaaaggagatactggaaatgcccaacctatatggtgagtttgctgttgtaatactttgttgtt 3745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 3 - 197
Target Start/End: Complemental strand, 31815452 - 31815258
Alignment:
Q  3 cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatga 102  Q
    |||| ||||||||| |  |||| |||||||||||||||||| ||||| |||||| ||||||| |||| ||||||||||||  ||||||||||||| ||||    
T  31815452 ccctagaaccaaaaactttctctttcaacaatgtcttctaattccataactcaaccatcatcaaatgggttacctatgtgtggttgcaacaaaatcatga 31815353  T
Q  103 gaatgttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaatactttgttgtt 197  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  31815352 gaatgttcatatccaattcacatgaaaaccctaaaaggagatactggaaatgcccaacctatatgatgagtttgctgttgtaatactttgttgtt 31815258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 8323120 - 8323032
Alignment:
Q  3 cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaa 91  Q
    |||| ||||||||| |  |||| |||||||||||||||||| ||||| |||||| ||||||| |||| ||||||||||||  |||||||    
T  8323120 ccctagaaccaaaaactttctctttcaacaatgtcttctaattccataactcaaccatcatcaaatgggttacctatgtgtggttgcaa 8323032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 42300810 - 42300867
Alignment:
Q  3 cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcat 60  Q
    ||||||||||||||| ||| |||||||||||| | |||||| ||||||||||||||||    
T  42300810 cccttgaaccaaaactcatatccttcaacaatttattctaattccattactcaatcat 42300867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 52794061 - 52794118
Alignment:
Q  3 cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcat 60  Q
    ||||||||||||||||||| |||||||||||| | |||||| ||||| ||||||||||    
T  52794061 cccttgaaccaaaacccatatccttcaacaatttattctaattccatcactcaatcat 52794118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 9419466 - 9419362
Alignment:
Q  29 aacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatgagaatgttcatatccaattcacttgaa 128  Q
    ||||||||||||| | |||||| ||||||||||||| | |||||| |||||     ||| ||||||||| ||||  |||||||| |||||||||| |||     
T  9419466 aacaatgtcttctcattccatttctcaatcatcatcaattgagttccctatacatggttacaacaaaataatgaagatgttcatctccaattcacatgac 9419367  T
Q  129 aaccc 133  Q
    |||||    
T  9419366 aaccc 9419362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 7384498 - 7384449
Alignment:
Q  87 tgcaacaaaattatgagaatgttcatatccaattcacttgaaaaccctaa 136  Q
    ||||||||||||||||| |||||||| |||||||||  | ||||||||||    
T  7384498 tgcaacaaaattatgaggatgttcatctccaattcaaataaaaaccctaa 7384449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 23573247 - 23573336
Alignment:
Q  85 gttgcaacaaaattatgagaatgttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtt 174  Q
    ||||||||||||  ||||  ||||| || || ||||||  ||| || |||||||||||||| ||||||| |||||| | |||||||||||    
T  23573247 gttgcaacaaaacaatgaagatgtttatctcaaattcaactgagaatcctaaaaggagatactggaaatgcccaacatttatggtgagtt 23573336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 107 - 246
Target Start/End: Original strand, 31200053 - 31200193
Alignment:
Q  107 gttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaatactttgttgttctcttattt 206  Q
    |||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  31200053 gttcatattcaatttacttgacaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgatgttgtaatactttgttgttttcttattt 31200152  T
Q  207 t-tcacattttaattagctgaatatatttgttttcatctca 246  Q
    |   ||||||||||||||||||||| |||||||||||||||    
T  31200153 tcgtacattttaattagctgaatatgtttgttttcatctca 31200193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 5386895 - 5386716
Alignment:
Q  11 ccaaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatgagaatgttc 110  Q
    ||||||| ||| || ||||| |||||||||| | || |||  |||||||||||| |||||||| ||||| ||| ||||||||||||  ||||| |||||     
T  5386895 ccaaaactcatttcattcaataatgtcttctcattctatttatcaatcatcatctaatgagttgcctatttgctgttgcaacaaaaccatgaggatgtta 5386796  T
Q  111 atatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaatactt 190  Q
    |||||||||||| ||||||||||||||||||| |||||||||| |||||| ||||  |||||||||| ||||||||||||    
T  5386795 atatccaattcaattgaaaaccctaaaaggaggtattggaaatgcccaacatataccgtgagtttgccgttgtaatactt 5386716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 5385972 - 5386210
Alignment:
Q  11 ccaaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatgagaatgttc 110  Q
    ||||||| ||| || |||||||||||||||| | | ||||  |||||||||||| |||||||| ||||| ||  ||| |||  |||  ||||| ||||||    
T  5385972 ccaaaactcatttcattcaacaatgtcttctcatttcatttatcaatcatcatctaatgagttgcctatttgtggtttcaattaaaccatgaggatgttc 5386071  T
Q  111 atatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaatactttg-ttgttctcttatttt-t 208  Q
    |||| ||||||| |||||||| ||||||||||||||||||||| ||||||  |||  |||||||||  |||||||||||| | || || |||||||||      
T  5386072 atatgcaattcaattgaaaactctaaaaggagatattggaaatgcccaacaaataccgtgagtttgtcgttgtaatacttggttttttttcttattttca 5386171  T
Q  209 cacattttaattagctgaatatatttgttttcatctcac 247  Q
    ||||||| |||| |||| |||| ||||||||||||||||    
T  5386172 cacatttgaatttgctgcatatgtttgttttcatctcac 5386210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 16196464 - 16196604
Alignment:
Q  23 tccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatgagaatgttcatatccaattca 122  Q
    ||||||||||||||||||| | ||||   |||||||||||||  |||| || ||||| ||  ||||| |||||| || ||| |||||||| |||||||||    
T  16196464 tccttcaacaatgtcttcttattccacctctcaatcatcatcatatgacttgcctatatgtggttgctacaaaagtacgaggatgttcatgtccaattca 16196563  T
Q  123 cttgaaaaccct-aaaaggagatattggaaatacccaacct 162  Q
    |||||||||| | ||||| |||||||| |||| ||||||||    
T  16196564 cttgaaaaccataaaaagaagatattgaaaatgcccaacct 16196604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 34594636 - 34594769
Alignment:
Q  29 aacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatgagaatgttcatatccaattcacttgaa 128  Q
    ||||||||||||| | | |||| ||||| ||||||| | |||||| ||||| |  |||||||| ||||| | ||| |||||||| |||||||||| |||     
T  34594636 aacaatgtcttctcatttcatttctcaaccatcatcaattgagttgcctatatatagttgcaataaaataacgaggatgttcatctccaattcacatgac 34594735  T
Q  129 aaccctaaaaggagatattggaaatacccaacct 162  Q
    || |||||||| |||||||| ||||  |||||||    
T  34594736 aatcctaaaagaagatattgaaaatgtccaacct 34594769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 24612627 - 24612682
Alignment:
Q  3 cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatc 58  Q
    ||||| ||||||||||||| |||||||||||| | |||||| ||||||||||||||    
T  24612627 cccttaaaccaaaacccatatccttcaacaatttattctaattccattactcaatc 24612682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 55198003 - 55197936
Alignment:
Q  12 caaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctat 79  Q
    |||| ||||| ||||||||||||||||||| | |||||| |||| |||||||| |||||||| |||||    
T  55198003 caaaccccatttccttcaacaatgtcttctcattccatttctcattcatcatcaaatgagttgcctat 55197936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 25529579 - 25529529
Alignment:
Q  13 aaaacccatctccttcaacaatgtcttctaactccattactcaatcatcat 63  Q
    ||||||||| ||||||||||||||||||| | |||||| ||||||||||||    
T  25529579 aaaacccatttccttcaacaatgtcttctcattccatttctcaatcatcat 25529529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 31199633 - 31199676
Alignment:
Q  1 ctcccttgaaccaaaacccatctccttcaacaatgtcttctaac 44  Q
    |||| |||||||||||| ||| ||||||||||||||||||||||    
T  31199633 ctcctttgaaccaaaactcatatccttcaacaatgtcttctaac 31199676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 1677365 - 1677462
Alignment:
Q  29 aacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatgagaatgttcatatccaattcacttg 126  Q
    ||||||||||||| | ||||||  ||||| |||||| |||||||| || ||  |  ||||||  ||||||||||| |||||||| |||||||| ||||    
T  1677365 aacaatgtcttctcattccatttgtcaattatcatcaaatgagttgccaatacgtggttgcagaaaaattatgaggatgttcatctccaattcgcttg 1677462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 1678410 - 1678354
Alignment:
Q  23 tccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctat 79  Q
    ||||||||||||||||||| | |||||| |||| |||||||  |||||||| |||||    
T  1678410 tccttcaacaatgtcttctcattccatttctcattcatcataaaatgagttgcctat 1678354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 190
Target Start/End: Original strand, 28427270 - 28427434
Alignment:
Q  26 ttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatgagaatgttcatatccaattcactt 125  Q
    ||||| |||||||| | | ||||||  |||||||||||  |||||||| ||| | ||  ||||||||||||    ||| |||||||||||||||||| ||    
T  28427270 ttcaataatgtcttgtcattccatttatcaatcatcatgtaatgagttgcctttttgtggttgcaacaaaaccgcgaggatgttcatatccaattcaatt 28427369  T
Q  126 gaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaatactt 190  Q
    ||||||||||||| |||||||||||||| |||||| ||||   ||||||||| ||||||||||||    
T  28427370 gaaaaccctaaaaagagatattggaaatgcccaacatatactctgagtttgccgttgtaatactt 28427434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 55019064 - 55019010
Alignment:
Q  6 ttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcat 60  Q
    |||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||    
T  55019064 ttgaaccaaaacccatatccttcaacaatgtcatctaattccattactcaatcat 55019010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 38158330 - 38158273
Alignment:
Q  3 cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcat 60  Q
    ||||||||||||||||||| ||||||||||||||| ||||| |||||||||| |||||    
T  38158330 cccttgaaccaaaacccatatccttcaacaatgtcatctaattccattactcgatcat 38158273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 23703585 - 23703530
Alignment:
Q  3 cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatc 58  Q
    ||||||||||||||| ||| |||||||||||| | |||||| ||||||||||||||    
T  23703585 cccttgaaccaaaactcatatccttcaacaatttattctaattccattactcaatc 23703530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 35785520 - 35785575
Alignment:
Q  3 cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatc 58  Q
    ||||||||||||||| ||| |||||||||||| | |||||| ||||||||||||||    
T  35785520 cccttgaaccaaaactcatatccttcaacaatttattctaattccattactcaatc 35785575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 2671912 - 2672021
Alignment:
Q  13 aaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgca-acaaaattatgagaatgttca 111  Q
    ||||||||| || || ||||||||||||| | ||||||  |||||||||||| |||||||| || ||  |  |||||| | ||||||||||| |||||||    
T  2671912 aaaacccatttcattgaacaatgtcttctcattccatttgtcaatcatcatcaaatgagttgccaatacgtggttgcagaaaaaattatgaggatgttca 2672011  T
Q  112 tatccaattc 121  Q
    | ||||||||    
T  2672012 tctccaattc 2672021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 2672675 - 2672616
Alignment:
Q  12 caaaacccatctccttcaacaatgtcttctaactccattactcaatcatcatccaatgag 71  Q
    |||| ||||| ||||||||||||||||||| | |||||| |||| |||||||| ||||||    
T  2672675 caaaccccatttccttcaacaatgtcttctcattccatttctcattcatcatcaaatgag 2672616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 4907174 - 4907119
Alignment:
Q  3 cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatc 58  Q
    ||||||||||||||| | | |||||||||||| | |||||| ||||||||||||||    
T  4907174 cccttgaaccaaaactcttatccttcaacaatttattctaattccattactcaatc 4907119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 4933043 - 4932988
Alignment:
Q  3 cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatc 58  Q
    ||||||||||||||| | | |||||||||||| | |||||| ||||||||||||||    
T  4933043 cccttgaaccaaaacacttatccttcaacaatttattctaattccattactcaatc 4932988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 174
Target Start/End: Original strand, 13507131 - 13507273
Alignment:
Q  31 caatgtcttctaactccattactcaatcatcatccaatgagttacctatgtgcagttgcaacaaaattatgagaatgttcatatccaattcacttgaaaa 130  Q
    ||||||||||| | ||||||||| | ||||| || | |||||  ||||| ||  |||||||||||   ||||  ||||| || ||||||| | |||| ||    
T  13507131 caatgtcttcttattccattactaattcatcttcaattgagtg-cctatttgtggttgcaacaaagcaatgaatatgtttatctccaatttagttgacaa 13507229  T
Q  131 ccctaaaaggagatattggaaatacccaacctatatggtgagtt 174  Q
    ||||||||| ||||| |||||||||||||| | ||||| |||||    
T  13507230 ccctaaaagaagatactggaaatacccaacatttatggcgagtt 13507273  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 174
Target Start/End: Complemental strand, 13508035 - 13507976
Alignment:
Q  115 ccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtt 174  Q
    |||||||| |||| |||||||||| |||||| ||||||| |||||| | |||||||||||    
T  13508035 ccaattcaattgacaaccctaaaatgagataatggaaatgcccaacatttatggtgagtt 13507976  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 29756621 - 29756676
Alignment:
Q  3 cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatc 58  Q
    ||||||||||||||||| | |||||||||||| | |||||| | ||||||||||||    
T  29756621 cccttgaaccaaaacccttatccttcaacaatttattctaatttcattactcaatc 29756676  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 42225787 - 42225837
Alignment:
Q  85 gttgcaacaaaattatgagaatgttcatatccaattcacttgaaaacccta 135  Q
    ||||||||||||| ||||| |||||||| |||||||||  |||||||||||    
T  42225787 gttgcaacaaaatcatgaggatgttcatctccaattcaaatgaaaacccta 42225837  T

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Target: scaffold0060 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 12950 - 12893
Alignment:
Q  3 cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcat 60  Q
    ||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||||    
T  12950 cccttgaaccaaaacccatatccttcaacaatttattctaattccattactcaatcat 12893  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 194
Target Start/End: Original strand, 36900324 - 36900426
Alignment:
Q  92 caaaattatgagaatgttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtttgctgttgtaatacttt 191  Q
    |||||| || || |||||||| ||||||| |  |||||||||||||||||||||||| ||||  ||||||| || |||||||| | |||| ||||||| |    
T  36900324 caaaatcataaggatgttcatctccaatttaaatgaaaaccctaaaaggagatattgaaaatgtccaacctttacggtgagttcgttgttataatactat 36900423  T
Q  192 gtt 194  Q
    |||    
T  36900424 gtt 36900426  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 359022 - 358967
Alignment:
Q  3 cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatc 58  Q
    ||||| ||||||||||||| |||||||||||| | |||||| ||||||||||||||    
T  359022 cccttaaaccaaaacccatatccttcaacaatttattctaattccattactcaatc 358967  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 27410150 - 27410221
Alignment:
Q  3 cccttgaaccaaaacc-catctccttcaacaatgtcttctaactccattactcaatcatcatccaatgagtt 73  Q
    ||||||||||||||   ||| ||||||||||||||||| | | |||||| ||||||||||||| ||||||||    
T  27410150 cccttgaaccaaaaaatcatttccttcaacaatgtcttatcattccatttctcaatcatcatcaaatgagtt 27410221  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 17707061 - 17706976
Alignment:
Q  88 gcaacaaaattatgagaatgttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtt 174  Q
    |||||||||| || || |||||||| ||||||| |  |||||||||| |||| |||||||||||||  ||||||| || ||||||||    
T  17707061 gcaacaaaatcataaggatgttcatctccaatttaaatgaaaaccct-aaagaagatattggaaatgtccaacctttacggtgagtt 17706976  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 21143729 - 21143675
Alignment:
Q  3 cccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaat 57  Q
    |||||||||||||||| || | |||||||||| | |||||| |||||||||||||    
T  21143729 cccttgaaccaaaaccaatatgcttcaacaatttattctaattccattactcaat 21143675  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 37964296 - 37964246
Alignment:
Q  23 tccttcaacaatgtcttctaactccattactcaatcatcatccaatgagtt 73  Q
    ||||||||||||||||| | | |||||| ||||||||||||| ||||||||    
T  37964296 tccttcaacaatgtcttatcattccatttctcaatcatcatcaaatgagtt 37964246  T

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Target: scaffold0140 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 35941 - 36030
Alignment:
Q  85 gttgcaacaaaattatgagaatgttcatatccaattcacttgaaaaccctaaaaggagatattggaaatacccaacctatatggtgagtt 174  Q
    ||||||||||||  ||||  ||||| || || |||||| |||| ||||||||||||||||| ||||||| |||||| | |||||||||||    
T  35941 gttgcaacaaaacaatgaagatgtttatctcaaattcaattgacaaccctaaaaggagatactggaaatgcccaacatttatggtgagtt 36030  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 13374122 - 13374178
Alignment:
Q  4 ccttgaaccaaaacccatctccttcaacaatgtcttctaactccattactcaatcat 60  Q
    ||||||||||||| |||  |||||||||||| | |||||| ||||||||||||||||    
T  13374122 ccttgaaccaaaatccaaatccttcaacaatttattctaattccattactcaatcat 13374178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 41282674 - 41282720
Alignment:
Q  17 cccatctccttcaacaatgtcttctaactccattactcaatcatcat 63  Q
    ||||| ||||||||||||||||||| | |||||| ||||||||||||    
T  41282674 cccatttccttcaacaatgtcttctcattccatttctcaatcatcat 41282720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 41284131 - 41284083
Alignment:
Q  13 aaaacccatctccttcaacaatgtcttctaactccattactcaatcatc 61  Q
    ||||||||| |||||||||||| |||||| | |||||| ||||||||||    
T  41284131 aaaacccatttccttcaacaatctcttctcattccatttctcaatcatc 41284083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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