View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0253_low_45 (Length: 246)
Name: NF0253_low_45
Description: NF0253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0253_low_45 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 55776626 - 55776393
Alignment:
| Q |
13 |
aaaatcaattataatttctctttgaagcttaaccatgtcttcttccaaatctgaccaatttgatgcagcaacaccgacggcaaacccacccaccatcaat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55776626 |
aaaatcaattataatttctctttgaagcttaaccatgtcttcttccaaatctgaccaatttgatgcagcaacaccgacggcaaacccacccaccatcaat |
55776527 |
T |
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| Q |
113 |
atgtagaagataaaggaattaggattgagattaagtatttgcaaagttgcaataagattgagaactgacatagaagacactattttgaaagaaatatgat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55776526 |
atgtagaagataaaggaattaggattgagattaagtatttgcaaagttgcaataagattgagaactgacatagaagacactattttgaaagaaatatgat |
55776427 |
T |
|
| Q |
213 |
tcgagatgtaagaaaaacgttgcatagagataag |
246 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
55776426 |
tcgagatgtaagaaaaacgttgcatagagataag |
55776393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 55840804 - 55840571
Alignment:
| Q |
13 |
aaaatcaattataatttctctttgaagcttaaccatgtcttcttccaaatctgaccaatttgatgcagcaacaccgacggcaaacccacccaccatcaat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55840804 |
aaaatcaattataatttctctttgaagcttaaccatgtcttcttccaaatctgaccaatttgatgcagcaacaccgacggcaaacccacccaccatcaat |
55840705 |
T |
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| Q |
113 |
atgtagaagataaaggaattaggattgagattaagtatttgcaaagttgcaataagattgagaactgacatagaagacactattttgaaagaaatatgat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55840704 |
atgtagaagataaaggaattaggattgagattaagtatttgcaaagttgcaataagattgagaactgacatagaagacactattttgaaagaaatatgat |
55840605 |
T |
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| Q |
213 |
tcgagatgtaagaaaaacgttgcatagagataag |
246 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
55840604 |
tcgagatgtaagaaaaacgttgcatagagataag |
55840571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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