View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0253_low_49 (Length: 226)
Name: NF0253_low_49
Description: NF0253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0253_low_49
Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 2 - 147
Target Start/End: Complemental strand, 29281227 - 29281082
Alignment:
Q
2
cttaatatcataccagcttttttggcagctctacacaatgcttctttaatgagaagctgtgcagggtctatctctggtgataaagtgatgaatgactcca
101
Q
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
29281227
cttaatatcataccagcttttttggcagctctacataatgcttctttaatgagaagctgtgcagggtctatctctggtgataaagtgatgaatgactcca
29281128
T
Q
102
ctttagcaactgcttcttcattggtgaaatattgatgatgtccatc
147
Q
|||||||||||||||||||||||||||||||||| ||| |||||||
T
29281127
ctttagcaactgcttcttcattggtgaaatattggtgaagtccatc
29281082
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 21969071 - 21969120
Alignment:
Q
86
gtgatgaatgactccactttagcaactgcttcttcattggtgaaatattg
135
Q
|||||||||||||| |||||||| | |||||||||||||||||| |||||
T
21969071
gtgatgaatgactctactttagccattgcttcttcattggtgaagtattg
21969120
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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