View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0253_low_5 (Length: 503)
Name: NF0253_low_5
Description: NF0253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0253_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 29 - 494
Target Start/End: Original strand, 21830662 - 21831117
Alignment:
| Q |
29 |
aataatgctcaatctcatgcttaatatgtattgaagtaatatctcactttcttatttcttagtcatttgttccattctaggtaaggttttgatactcatg |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21830662 |
aataatgctcaatctcatgcttaatatgtattgaagtaatatctcactttcttatttcttagtcatttgttccattctaggtaaggttttgatactcatg |
21830761 |
T |
|
| Q |
129 |
tatgcgataacattcaatcgcttctaatttctcaaatttttatttgtatgtgtctatgttgtatctagtgtgtgtacaagttcttcattatacttttctt |
228 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21830762 |
tatgctataacattcaatcgcttctaatttctcaaatttttatttgtatgtgtctatgttgtatctagtgtgtgtacaagttcttcattatacttttctt |
21830861 |
T |
|
| Q |
229 |
taatttctgnnnnnnnnnnnnnnatggttagataatgcatctagagctatg----atagtgattaatatccaatttaaatgttttcgcaannnnnnnnnn |
324 |
Q |
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||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21830862 |
taatttccg-------tttttttatggttagataatgcatctagagctatgatatatagtgattaatatccaatttaaatgttttcgcaa---tttcttt |
21830951 |
T |
|
| Q |
325 |
nnnnngtcaagtattatagttggagaaacaaggaaacatgggtttgagccctacataccaatatttacgtagttaactaccgagctacacttacataatt |
424 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21830952 |
tttttgtcaagtattatagttggagaagcaaggaaacatgggtttgagccctacataccaatatttacgtagt----taccgagctacacttacataatt |
21831047 |
T |
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| Q |
425 |
ttgttttcacaattagatacacacattcttgaattcaattaaaatctaaaacttgtccatttagaattat |
494 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21831048 |
ttgttttcacaattagatacacacatttttgaattcaattaaaatctaaaacttgtcgatttagaattat |
21831117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 11791868 - 11791928
Alignment:
| Q |
29 |
aataatgctcaatctcatgcttaatatgtattgaagtaatatctcactttcttatttctta |
89 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11791868 |
aataatgctcaatctcatgcttaatatgtattgaagtaatatctcactttcttatttctta |
11791928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 45630689 - 45630749
Alignment:
| Q |
29 |
aataatgctcaatctcatgcttaatatgtattgaagtaatatctcactttcttatttctta |
89 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45630689 |
aataatgctcaatctcatgcttaatatgtattgaagtaatatctcactttcttatttctta |
45630749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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