View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0253_low_7 (Length: 480)
Name: NF0253_low_7
Description: NF0253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0253_low_7 |
 |  |
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[»] scaffold0013 (1 HSPs) |
 |  |  |
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[»] scaffold0166 (1 HSPs) |
 |  |  |
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[»] scaffold0178 (1 HSPs) |
 |  |  |
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[»] scaffold0040 (1 HSPs) |
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[»] scaffold0035 (1 HSPs) |
 |  |  |
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[»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 20)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 41 - 470
Target Start/End: Complemental strand, 13054698 - 13054271
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatt |
140 |
Q |
|
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | |
|
|
T |
13054698 |
ctagattcgcacacattatgtgtggagaagtgggaaatctggggttcgaaccccggcccctgcacatattttccctggtagctaccaattgagccacagt |
13054599 |
T |
 |
Q |
141 |
tccgggactcacacaattgtctactctagttgaagttggagaatgattagtaataattactcaattatgaaccttttttgggcatgaaagatagctctct |
240 |
Q |
|
|
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
13054598 |
tctgggactcaca--attgtctactctagttgaagttggagaatgattagtaataattactcaattatgaaccttttttgggcatgaaagatagctctct |
13054501 |
T |
 |
Q |
241 |
ccccacccaccatcctctctttgtgtcgagagaagaaatttaacagctttacgaatcgcaacagaattggtataagtgtttccagcagctgctaaaccac |
340 |
Q |
|
|
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||| | |
|
|
T |
13054500 |
ccccacccaccatcctctctttgtgttgagagaagaaattgaacagctttacgaatcacaacagaattgctataagtctttccagcagctgctaaacctc |
13054401 |
T |
 |
Q |
341 |
caagagcaaaataagtaccataaataaagcaaattccccaacttccataccatgaaccatcatctttttgtatatcttcaatgaatctaactgcattgcg |
440 |
Q |
|
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
T |
13054400 |
caagagcaaaataagtaccataaatgaagcaaattccccaacttccataccatgaaccatcatctttttgtgtatcttcaatgaatctaactgcattgtc |
13054301 |
T |
 |
Q |
441 |
aatgaaattctctatctctttcttcctatg |
470 |
Q |
|
|
|||||||||||||||||| ||||||||||| |
|
|
T |
13054300 |
aatgaaattctctatctcgttcttcctatg |
13054271 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 138
Target Start/End: Original strand, 24250150 - 24250248
Alignment:
Q |
40 |
actagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca |
138 |
Q |
|
|
||||||||| ||||||||||||||||| |||||| ||||| ||||||||||| || ||||||||||||| | | | ||||| ||||||| |||| |||| |
|
|
T |
24250150 |
actagattcacacacattatgtgtggaaaagtggagaatccagggttcgaacacccgcccctgcacataatgttcatggtagctaccaactgagttaca |
24250248 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 9667239 - 9667343
Alignment:
Q |
44 |
gattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatttcc |
143 |
Q |
|
|
||||| |||||||||||| |||||||||||| ||| | |||||||||| || |||||| |||| ||| || ||| || ||||||| ||||||||| || | |
|
|
T |
9667239 |
gattcacacacattatgtatggagaagtgggaaatttggggttcgaactccagcccctacacaaattatctctgatagctaccaactgagctacacttac |
9667338 |
T |
 |
Q |
144 |
gggac |
148 |
Q |
|
|
||||| |
|
|
T |
9667339 |
gggac |
9667343 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 5808398 - 5808456
Alignment:
Q |
50 |
cacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacata |
108 |
Q |
|
|
||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||| |
|
|
T |
5808398 |
cacacattatgtgtggagaagtgaggaatccggggttcgaaccccaacccctgcacata |
5808456 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 138
Target Start/End: Original strand, 23198530 - 23198626
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca |
138 |
Q |
|
|
||||||| |||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| ||| ||| || || ||| ||| ||||||||| |
|
|
T |
23198530 |
ctagatttacacacattatgtgtggagaagtggggaatc-ggggtttgaaccccaacccctgcacaaattatccttgatagctatcaactgagctaca |
23198626 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 136
Target Start/End: Complemental strand, 25091263 - 25091169
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagcta |
136 |
Q |
|
|
|||||||| ||||||||||||||| |||||| | ||||| | ||| ||||| || |||||||||| ||| ||||||||| ||||||| ||||||| |
|
|
T |
25091263 |
ctagattcacacacattatgtgtgaagaagt-gaaaatctggagtttgaacctcgacccctgcacaaattatccctggtagctaccaactgagcta |
25091169 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 27227269 - 27227318
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaa |
90 |
Q |
|
|
|||||||| |||||||||||||||||||||||||||||| || |||||| |
|
|
T |
27227269 |
ctagattcaaacacattatgtgtggagaagtggggaatctgggattcgaa |
27227318 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 36876997 - 36877070
Alignment:
Q |
61 |
tgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagc |
134 |
Q |
|
|
|||||||||||||| |||| |||||||||||||| |||||||||| ||| ||| || || ||||||| ||||| |
|
|
T |
36876997 |
tgtggagaagtgggaaatccggggttcgaaccccgacccctgcacaaattatccatgttagctaccaactgagc |
36877070 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 138
Target Start/End: Original strand, 47684492 - 47684589
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca |
138 |
Q |
|
|
|||||||| |||||||||||| ||||||||| || |||| |||||| |||||| |||||||||| ||| ||| ||||| | |||| ||||||||| |
|
|
T |
47684492 |
ctagattcacacacattatgtatggagaagtaggaaatccggggttcaaaccccaacccctgcacaaattatccttggtagcccccaactgagctaca |
47684589 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 45967366 - 45967474
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatt |
140 |
Q |
|
|
|||||||| ||||||||||||||| | ||||| ||||| |||||||||||||| ||| || ||||| | ||| ||| ||||||| ||||||||| | |
|
|
T |
45967366 |
ctagattcacacacattatgtgtgaaaaagtgaggaattcggggttcgaaccccgacccatgtacataatatccactgtagctaccaactgagctacact |
45967465 |
T |
 |
Q |
141 |
tccgggact |
149 |
Q |
|
|
| ||||||| |
|
|
T |
45967466 |
tacgggact |
45967474 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 27788354 - 27788311
Alignment:
Q |
61 |
tgtggagaagtggggaatctagggttcgaaccccggcccctgca |
104 |
Q |
|
|
||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
T |
27788354 |
tgtggagaagtggggtgtctggggttcgaaccccggcccctgca |
27788311 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 27791510 - 27791467
Alignment:
Q |
61 |
tgtggagaagtggggaatctagggttcgaaccccggcccctgca |
104 |
Q |
|
|
||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
T |
27791510 |
tgtggagaagtggggtgtctggggttcgaaccccggcccctgca |
27791467 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 37307762 - 37307703
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccc |
100 |
Q |
|
|
|||||||| ||||||||| ||||||||||||||||||| | |||||||||||| |||| |
|
|
T |
37307762 |
ctagattcaaacacattatttgtggagaagtggggaatccggagttcgaaccccgacccc |
37307703 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 42435205 - 42435248
Alignment:
Q |
61 |
tgtggagaagtggggaatctagggttcgaaccccggcccctgca |
104 |
Q |
|
|
|||||||||||| || |||| ||||||||||||||||||||||| |
|
|
T |
42435205 |
tgtggagaagtgaggtatctggggttcgaaccccggcccctgca |
42435248 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 27744677 - 27744643
Alignment:
Q |
45 |
attcgcacacattatgtgtggagaagtggggaatc |
79 |
Q |
|
|
|||| |||||||||||||||||||||||||||||| |
|
|
T |
27744677 |
attcacacacattatgtgtggagaagtggggaatc |
27744643 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 135
Target Start/End: Original strand, 44165893 - 44165986
Alignment:
Q |
43 |
agattcgcacacattatgtgtggagaagt-ggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagct |
135 |
Q |
|
|
|||||| |||||||||||||||||||||| ||||||| | |||||||| |||| | |||| | ||| ||||||||| ||||||| |||||| |
|
|
T |
44165893 |
agattcacacacattatgtgtggagaagtgggggaattcaaggttcgaatcccgatctttgcataaattatccctggtagctaccaactgagct |
44165986 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 47440795 - 47440844
Alignment:
Q |
61 |
tgtggagaagtggggaatctagggttcgaaccccggcccctgcacatatt |
110 |
Q |
|
|
||||||||||||||| || ||||||||||||||| |||||||| ||||| |
|
|
T |
47440795 |
tgtggagaagtggggtgtccagggttcgaaccccgacccctgcatatatt |
47440844 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 22771477 - 22771433
Alignment:
Q |
60 |
gtgtggagaagtggggaatctagggttcgaaccccggcccctgca |
104 |
Q |
|
|
|||||||||||| |||||||| |||||||| || ||||||||||| |
|
|
T |
22771477 |
gtgtggagaagtcgggaatctggggttcgagcctcggcccctgca |
22771433 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 29551201 - 29551169
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtgg |
73 |
Q |
|
|
||||||||||||||||||||| ||||||||||| |
|
|
T |
29551201 |
ctagattcgcacacattatgtatggagaagtgg |
29551169 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Complemental strand, 40273882 - 40273854
Alignment:
Q |
82 |
gggttcgaaccccggcccctgcacatatt |
110 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
40273882 |
gggttcgaaccccggcccctgcacatatt |
40273854 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 5e-88; HSPs: 17)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 186 - 470
Target Start/End: Complemental strand, 106078 - 105794
Alignment:
Q |
186 |
attagtaataattactcaattatgaaccttttttgggcatgaaagatagctctctccccacccaccatcctctctttgtgtcgagagaagaaatttaaca |
285 |
Q |
|
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||| | |||||||||||||||| |
|
|
T |
106078 |
attagtaataaatactcaattatgaaccttttttgggcttgaaagatagctctccccccacccaccatcctctctctgtgttgtgagaagaaatttaaca |
105979 |
T |
 |
Q |
286 |
gctttacgaatcgcaacagaattggtataagtgtttccagcagctgctaaaccaccaagagcaaaataagtaccataaataaagcaaattccccaacttc |
385 |
Q |
|
|
||||| ||||| ||| | ||||||||||||| || ||||||||||||||||||||||||||||| ||| ||||||| | ||||||| |||||| ||| |
|
|
T |
105978 |
gctttgcgaatagcagcgcaattggtataagtcttgccagcagctgctaaaccaccaagagcaaaccaagaaccataagtgaagcaaactccccagtttc |
105879 |
T |
 |
Q |
386 |
cataccatgaaccatcatctttttgtatatcttcaatgaatctaactgcattgcgaatgaaattctctatctctttcttcctatg |
470 |
Q |
|
|
|||||||||||||||| || ||||||||||||||||||||| |||||| | | ||||||||||||||||||||||||||||| |
|
|
T |
105878 |
cataccatgaaccatcggctgtttgtatatcttcaatgaatcgaactgcctcggagatgaaattctctatctctttcttcctatg |
105794 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 210 - 470
Target Start/End: Complemental strand, 166591 - 166331
Alignment:
Q |
210 |
aaccttttttgggcatgaaagatagctctctccccacccaccatcctctctttgtgtcgagagaagaaatttaacagctttacgaatcgcaacagaattg |
309 |
Q |
|
|
|||||||||||||||||||||||||||||| |||||||||||||| | || ||| | ||||||||||||||||| || ||||||| | || ||||| |
|
|
T |
166591 |
aaccttttttgggcatgaaagatagctctccccccacccaccatcttttccctgtattctcagaagaaatttaacagccttgcgaatcgtagcacaattg |
166492 |
T |
 |
Q |
310 |
gtataagtgtttccagcagctgctaaaccaccaagagcaaaataagtaccataaataaagcaaattccccaacttccataccatgaaccatcatcttttt |
409 |
Q |
|
|
|||||||| |||||||||||||||||||||||||||||||| || ||||||| ||||||||| |||||| ||||||||||||||||||| || ||| |
|
|
T |
166491 |
gtataagtctttccagcagctgctaaaccaccaagagcaaaccaacaaccataagtaaagcaaactccccagtttccataccatgaaccatcggctgttt |
166392 |
T |
 |
Q |
410 |
gtatatcttcaatgaatctaactgcattgcgaatgaaattctctatctctttcttcctatg |
470 |
Q |
|
|
|||||||||||||||||| |||||| | | ||||||||||||||||||||||||||||| |
|
|
T |
166391 |
gtatatcttcaatgaatcgaactgcctcggagatgaaattctctatctctttcttcctatg |
166331 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 148
Target Start/End: Original strand, 35130616 - 35130723
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatt |
140 |
Q |
|
|
|||||||| ||||||| ||||||| ||||||||| |||| ||||||||||||||||||||||||| ||| || |||||| ||||||| ||| ||||| | |
|
|
T |
35130616 |
ctagattcacacacataatgtgtgaagaagtgggaaatccggggttcgaaccccggcccctgcacaaattatctctggtagctaccaactgaactacact |
35130715 |
T |
 |
Q |
141 |
tccgggac |
148 |
Q |
|
|
| |||||| |
|
|
T |
35130716 |
tacgggac |
35130723 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 41 - 148
Target Start/End: Original strand, 50263995 - 50264101
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatt |
140 |
Q |
|
|
|||||||| ||||||| |||||||||||||||||||||| || ||||| |||||||||||||||| ||| ||||| ||| ||||||| |||| |||| | |
|
|
T |
50263995 |
ctagattcacacacatcatgtgtggagaagtggggaatccgggtttcgagccccggcccctgcacaaattatccct-gtagctaccaactgagttacact |
50264093 |
T |
 |
Q |
141 |
tccgggac |
148 |
Q |
|
|
| |||||| |
|
|
T |
50264094 |
tacgggac |
50264101 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 41 - 138
Target Start/End: Original strand, 31351678 - 31351775
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca |
138 |
Q |
|
|
|||||||| |||| ||||||||||||||| |||| |||| | |||||||||||| |||||||||| ||| || |||||| ||||||| ||||||||| |
|
|
T |
31351678 |
ctagattcacacatattatgtgtggagaaatgggaaatccggagttcgaaccccgacccctgcacaaattatctctggtagctaccaactgagctaca |
31351775 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 41 - 148
Target Start/End: Original strand, 13538260 - 13538367
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatt |
140 |
Q |
|
|
|||||||| |||||||||||| |||||||||||| ||| | |||||||||| || |||||| |||| ||| || ||| || ||||||| ||||||||| | |
|
|
T |
13538260 |
ctagattcacacacattatgtatggagaagtgggaaatttggggttcgaactccagcccctacacaaattatctctgatagctaccaactgagctacact |
13538359 |
T |
 |
Q |
141 |
tccgggac |
148 |
Q |
|
|
| |||||| |
|
|
T |
13538360 |
tacgggac |
13538367 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 55967861 - 55967786
Alignment:
Q |
63 |
tggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca |
138 |
Q |
|
|
||||||||||||||||| |||||||||||||||||||| |||| ||| ||| ||||| |||||||||||||||| |
|
|
T |
55967861 |
tggagaagtggggaatccggggttcgaaccccggcccctacacaaattatccttggtagttaccaattgagctaca |
55967786 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 35010388 - 35010496
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatt |
140 |
Q |
|
|
|||||||| |||||||||||||||||||||||| |||| | |||||||||||| | |||||||| ||| || ||| || ||||||| ||||||| | | |
|
|
T |
35010388 |
ctagattcatacacattatgtgtggagaagtgggaaatccggagttcgaaccccgactcctgcacaaattatctctgatagctaccaactgagctaaact |
35010487 |
T |
 |
Q |
141 |
tccgggact |
149 |
Q |
|
|
| ||||||| |
|
|
T |
35010488 |
tacgggact |
35010496 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 138
Target Start/End: Original strand, 28091334 - 28091431
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca |
138 |
Q |
|
|
|||||||| ||||||||||||||||||||||||||||| | | ||||||||| | ||||||| | ||| || ||| || ||||||| ||||||||| |
|
|
T |
28091334 |
ctagattcacacacattatgtgtggagaagtggggaatttggagttcgaacctcaatccctgcataaattatcactgatagctaccaactgagctaca |
28091431 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 25273075 - 25273180
Alignment:
Q |
42 |
tagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacattt |
141 |
Q |
|
|
|||||||||||| ||||| | ||||||||||||||||| | |||||||||| |||||||||||| | ||||| ||| ||| ||| ||||||||| || |
|
|
T |
25273075 |
tagattcgcacatattatatatggagaagtggggaatc-cgagttcgaaccctaacccctgcacataatatccctagtagctatcaactgagctacactt |
25273173 |
T |
 |
Q |
142 |
ccgggac |
148 |
Q |
|
|
|||||| |
|
|
T |
25273174 |
acgggac |
25273180 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 10601965 - 10601906
Alignment:
Q |
45 |
attcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgca |
104 |
Q |
|
|
|||| |||| ||||||||| |||||||||||||||| |||||| ||||||| ||| |||| |
|
|
T |
10601965 |
attcacacatattatgtgtagagaagtggggaatctggggttcaaaccccgacccttgca |
10601906 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 40981802 - 40981888
Alignment:
Q |
52 |
cacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca |
138 |
Q |
|
|
|||||||||||||||||||||| |||||| | ||| ||| ||| ||||| || | ||| |||||| || ||||||| ||||||||| |
|
|
T |
40981802 |
cacattatgtgtggagaagtggagaatctgagattcaaactccgacccctacataaattatccctgctagctaccaactgagctaca |
40981888 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 33933724 - 33933773
Alignment:
Q |
61 |
tgtggagaagtggggaatctagggttcgaaccccggcccctgcacatatt |
110 |
Q |
|
|
||||||||||||||| || |||| ||||||||||||||||||| ||||| |
|
|
T |
33933724 |
tgtggagaagtggggtgtccaggggtcgaaccccggcccctgcatatatt |
33933773 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 138
Target Start/End: Original strand, 38415500 - 38415597
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca |
138 |
Q |
|
|
|||||||| |||||||||||| || |||| ||| |||| | ||||||||| || | || ||||||| ||| ||| || || ||||||| ||||||||| |
|
|
T |
38415500 |
ctagattcacacacattatgtatgaagaaatggagaatttggggttcgaatcctgacctctgcacaaattatccttgatagctaccaactgagctaca |
38415597 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 42657601 - 42657508
Alignment:
Q |
45 |
attcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca |
138 |
Q |
|
|
|||| ||||||||||||||| |||||||| |||| | |||||||||| ||| ||||| | | ||| || ||| || ||||||| ||||||||| |
|
|
T |
42657601 |
attcacacacattatgtgtgaagaagtggagaatgtggggttcgaactccgacccctatataaattatctctgatagctaccaactgagctaca |
42657508 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 44294295 - 44294384
Alignment:
Q |
60 |
gtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatttccgggact |
149 |
Q |
|
|
|||||||||||||| |||| ||||||||||| ||||||||||| ||||| |||| |||| || ||| |||| |||| || ||||||| |
|
|
T |
44294295 |
gtgtggagaagtggaaaatccagggttcgaactccggcccctgccaatattgtcccaggtagctctcaactgaggtacacttgcgggact |
44294384 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 13210198 - 13210226
Alignment:
Q |
82 |
gggttcgaaccccggcccctgcacatatt |
110 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
13210198 |
gggttcgaaccccggcccctgcacatatt |
13210226 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 202 - 470
Target Start/End: Original strand, 90709 - 90977
Alignment:
Q |
202 |
caattatgaaccttttttgggcatgaaagatagctctctccccacccaccatcctctctttgtgtcgagagaagaaatttaacagctttacgaatcgcaa |
301 |
Q |
|
|
||||||||||||||||| |||||||||||||||||||||||||| ||||| || | ||||||| | | ||||||||||||||||||||||||||| ||| |
|
|
T |
90709 |
caattatgaacctttttagggcatgaaagatagctctctccccaaccaccgtcgtttctttgtattgtgagaagaaatttaacagctttacgaatagcat |
90808 |
T |
 |
Q |
302 |
cagaattggtataagtgtttccagcagctgctaaaccaccaagagcaaaataagtaccataaataaagcaaattccccaacttccataccatgaaccatc |
401 |
Q |
|
|
|| |||| |||||| | || |||||||||||||||||||||||||| || ||| ||||||| | || |||||||||||||||||||||||||||||||| |
|
|
T |
90809 |
cacaattagtataattcttgccagcagctgctaaaccaccaagagcgaaccaagaaccataagtgaaacaaattccccaacttccataccatgaaccatc |
90908 |
T |
 |
Q |
402 |
atctttttgtatatcttcaatgaatctaactgcattgcgaatgaaattctctatctctttcttcctatg |
470 |
Q |
|
|
| ||||||| ||||||||| ||||| |||||||||| ||| || || |||||||| ||||||||||| |
|
|
T |
90909 |
agttttttgtgtatcttcaaggaatcgaactgcattggcaatcaagttatctatctcgttcttcctatg |
90977 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 7e-50; HSPs: 17)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 210 - 454
Target Start/End: Original strand, 5719500 - 5719744
Alignment:
Q |
210 |
aaccttttttgggcatgaaagatagctctctccccacccaccatcctctctttgtgtcgagagaagaaatttaacagctttacgaatcgcaacagaattg |
309 |
Q |
|
|
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| | | || ||||||||||||||||| ||||| |||||| |||| |
|
|
T |
5719500 |
aaccttttttgagcatgaaagatggctctctccccacccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcaacacaattc |
5719599 |
T |
 |
Q |
310 |
gtataagtgtttccagcagctgctaaaccaccaagagcaaaataagtaccataaataaagcaaattccccaacttccataccatgaaccatcatcttttt |
409 |
Q |
|
|
|||||| || || || |||||| ||||||||||||||| ||| ||||||| | ||||||||||||||| |||||||||||||||||||| | ||| |
|
|
T |
5719600 |
tcataagtcttgcccgcgactgctagaccaccaagagcaaaccaagaaccataagtgaagcaaattccccaatttccataccatgaaccatcacttgttt |
5719699 |
T |
 |
Q |
410 |
gtatatcttcaatgaatctaactgcattgcgaatgaaattctcta |
454 |
Q |
|
|
|| ||||||||| |||| |||||| || |||||||||||||| |
|
|
T |
5719700 |
gtttatcttcaaggaattgaactgcttttgcaatgaaattctcta |
5719744 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 210 - 454
Target Start/End: Original strand, 5687384 - 5687628
Alignment:
Q |
210 |
aaccttttttgggcatgaaagatagctctctccccacccaccatcctctctttgtgtcgagagaagaaatttaacagctttacgaatcgcaacagaattg |
309 |
Q |
|
|
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| | | || ||||||||||||||||| ||||| ||| || |||| |
|
|
T |
5687384 |
aaccttttttgagcatgaaagatggctctctccccacccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcagcacaattc |
5687483 |
T |
 |
Q |
310 |
gtataagtgtttccagcagctgctaaaccaccaagagcaaaataagtaccataaataaagcaaattccccaacttccataccatgaaccatcatcttttt |
409 |
Q |
|
|
|||||| || || || |||| || ||| ||||||||||| ||| ||||||| | ||||||||||||||| |||||||||||||||||||| | ||| |
|
|
T |
5687484 |
tcataagtcttgccggcggctgttagaccgccaagagcaaaccaagaaccataagtgaagcaaattccccaatttccataccatgaaccatcacttgttt |
5687583 |
T |
 |
Q |
410 |
gtatatcttcaatgaatctaactgcattgcgaatgaaattctcta |
454 |
Q |
|
|
|| ||||||||| |||| ||||||| || |||||||||||||| |
|
|
T |
5687584 |
gtttatcttcaaggaatttaactgcttttgcaatgaaattctcta |
5687628 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 210 - 454
Target Start/End: Original strand, 5666314 - 5666558
Alignment:
Q |
210 |
aaccttttttgggcatgaaagatagctctctccccacccaccatcctctctttgtgtcgagagaagaaatttaacagctttacgaatcgcaacagaattg |
309 |
Q |
|
|
||||||||||| || |||||||| |||||||||||| |||||||||||||||||| | | || ||||||||||||||||| ||||| ||| || |||| |
|
|
T |
5666314 |
aaccttttttgagcttgaaagatggctctctccccatccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcagcacaattc |
5666413 |
T |
 |
Q |
310 |
gtataagtgtttccagcagctgctaaaccaccaagagcaaaataagtaccataaataaagcaaattccccaacttccataccatgaaccatcatcttttt |
409 |
Q |
|
|
|||||| || || || |||| || ||| ||||||||||| ||| ||||||| | ||||||||||||||| |||||||||||||||||||| | ||| |
|
|
T |
5666414 |
tcataagtcttaccggcggctgttagaccgccaagagcaaaccaagaaccataagtgaagcaaattccccaatttccataccatgaaccatcacttgttt |
5666513 |
T |
 |
Q |
410 |
gtatatcttcaatgaatctaactgcattgcgaatgaaattctcta |
454 |
Q |
|
|
|| ||||||||| |||| ||||||| || |||||||||||||| |
|
|
T |
5666514 |
gtttatcttcaaggaatttaactgcttttgcaatgaaattctcta |
5666558 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 28300190 - 28300093
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca |
138 |
Q |
|
|
|||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||| || ||||| ||||||| ||||||||| |
|
|
T |
28300190 |
ctagattcacacacattatgtatggagaagtggggaatccggggttcgaaccccggcccctgcacaaattatcattggtagctaccaactgagctaca |
28300093 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 41 - 147
Target Start/End: Complemental strand, 12959810 - 12959704
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatt |
140 |
Q |
|
|
|||||||| |||||||||| || | | ||||||||||||| ||||||||||||| |||||||||| || |||||| || ||||||| ||||||||| | |
|
|
T |
12959810 |
ctagattcacacacattatatgcgaataagtggggaatctggggttcgaaccccaacccctgcacaagttatccctgatagctaccaactgagctacact |
12959711 |
T |
 |
Q |
141 |
tccggga |
147 |
Q |
|
|
| ||||| |
|
|
T |
12959710 |
tacggga |
12959704 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 15837239 - 15837177
Alignment:
Q |
44 |
gattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcaca |
106 |
Q |
|
|
||||| ||||||||||||||||| || ||||||||| || |||||||||||| |||||||||| |
|
|
T |
15837239 |
gattcacacacattatgtgtggaaaaatggggaatccagagttcgaaccccgacccctgcaca |
15837177 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 461
Target Start/End: Original strand, 5652914 - 5653018
Alignment:
Q |
357 |
accataaataaagcaaattccccaacttccataccatgaaccatcatctttttgtatatcttcaatgaatctaactgcattgcgaatgaaattctctatc |
456 |
Q |
|
|
||||||||| ||||||||||||||| | ||||||||||||||||| | ||||| | ||||||||||| ||| ||||| ||||||||| |||||| |
|
|
T |
5652914 |
accataaatgaagcaaattccccaattcccataccatgaaccatcgattgtttgtgaagattcaatgaatcgaaccgcatttgcaatgaaattatctatc |
5653013 |
T |
 |
Q |
457 |
tcttt |
461 |
Q |
|
|
||||| |
|
|
T |
5653014 |
tcttt |
5653018 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 1028820 - 1028723
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca |
138 |
Q |
|
|
|||||||| |||||||||||| || ||||||| ||||| | ||||||||| | ||||||||||||| | ||| |||| |||||||||||||||| |
|
|
T |
1028820 |
ctagattcacacacattatgtatgaagaagtgaagaatccggagttcgaacctcagcccctgcacataatgtcctcggtagttaccaattgagctaca |
1028723 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 76
Target Start/End: Original strand, 19756433 - 19756468
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtgggga |
76 |
Q |
|
|
|||||||| ||||||||||||||||||||||||||| |
|
|
T |
19756433 |
ctagattcacacacattatgtgtggagaagtgggga |
19756468 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 38107459 - 38107502
Alignment:
Q |
61 |
tgtggagaagtggggaatctagggttcgaaccccggcccctgca |
104 |
Q |
|
|
||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
T |
38107459 |
tgtggagaagtggggtgtctggggttcgaaccccggcccctgca |
38107502 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 38283209 - 38283166
Alignment:
Q |
61 |
tgtggagaagtggggaatctagggttcgaaccccggcccctgca |
104 |
Q |
|
|
||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
T |
38283209 |
tgtggagaagtggggtgtctggggttcgaaccccggcccctgca |
38283166 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 2908079 - 2908125
Alignment:
Q |
64 |
ggagaagtggggaatctagggttcgaaccccggcccctgcacatatt |
110 |
Q |
|
|
|||||||||||| || |||||||||||||||||||||||| ||||| |
|
|
T |
2908079 |
ggagaagtggggtgtccagggttcgaaccccggcccctgcatatatt |
2908125 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 9587655 - 9587602
Alignment:
Q |
55 |
attatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacata |
108 |
Q |
|
|
||||||||| ||||| || ||||| |||||||||||||||| ||| |||||||| |
|
|
T |
9587655 |
attatgtgtagagaaatgaggaatttagggttcgaaccccgacccttgcacata |
9587602 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 21133092 - 21133051
Alignment:
Q |
61 |
tgtggagaagtggggaatctagggttcgaaccccggcccctg |
102 |
Q |
|
|
||||||||||||||| ||| ||||||||||||||||||||| |
|
|
T |
21133092 |
tgtggagaagtggggtgtctggggttcgaaccccggcccctg |
21133051 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 13906660 - 13906688
Alignment:
Q |
82 |
gggttcgaaccccggcccctgcacatatt |
110 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
13906660 |
gggttcgaaccccggcccctgcacatatt |
13906688 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 36103956 - 36103984
Alignment:
Q |
82 |
gggttcgaaccccggcccctgcacatatt |
110 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
36103956 |
gggttcgaaccccggcccctgcacatatt |
36103984 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 41454861 - 41454889
Alignment:
Q |
82 |
gggttcgaaccccggcccctgcacatatt |
110 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
41454861 |
gggttcgaaccccggcccctgcacatatt |
41454889 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 18)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 210 - 470
Target Start/End: Original strand, 12135840 - 12136100
Alignment:
Q |
210 |
aaccttttttgggcatgaaagatagctctctccccacccaccatcctctctttgtgtcgagagaagaaatttaacagctttacgaatcgcaacagaattg |
309 |
Q |
|
|
|||||| || |||| ||| |||||||| || |||||||| |||| |||| ||| || | ||||||||||||||| ||||| ||||| ||| || ||||| |
|
|
T |
12135840 |
aaccttattagggcttgacagatagctttccccccacccgccattttctccttgcgttgtgagaagaaatttaactgctttgcgaatagcagcacaattg |
12135939 |
T |
 |
Q |
310 |
gtataagtgtttccagcagctgctaaaccaccaagagcaaaataagtaccataaataaagcaaattccccaacttccataccatgaaccatcatcttttt |
409 |
Q |
|
|
|||||||| |||||||||||||||||||||||||| || || ||| ||||||||| |||||||| |||||| ||||||||||||||||||| | ||| |
|
|
T |
12135940 |
gtataagtctttccagcagctgctaaaccaccaagtgccaaccaagaaccataaatgaagcaaataccccaagctccataccatgaaccatcagatgttt |
12136039 |
T |
 |
Q |
410 |
gtatatcttcaatgaatctaactgcattgcgaatgaaattctctatctctttcttcctatg |
470 |
Q |
|
|
|| ||||||| | | || |||||||||| ||| |||| |||||||||||||||||||| |
|
|
T |
12136040 |
gtttatcttctaggtattgaactgcattggcaataaaatcgtctatctctttcttcctatg |
12136100 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 38745298 - 38745406
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatt |
140 |
Q |
|
|
|||||||| |||||||| |||||||||||||||||||| ||||||||| |||| |||||||||| ||| ||||||||||| ||||| | ||||||||| |
|
|
T |
38745298 |
ctagattcacacacattttgtgtggagaagtggggaattcggggttcgaatcccgacccctgcacaaattatccctggtaaccaccaactaagctacatt |
38745397 |
T |
 |
Q |
141 |
tccgggact |
149 |
Q |
|
|
| ||||||| |
|
|
T |
38745398 |
tacgggact |
38745406 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 17002996 - 17002906
Alignment:
Q |
44 |
gattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctac |
137 |
Q |
|
|
||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| ||| ||||||||| ||||||| |||||||| |
|
|
T |
17002996 |
gattcacacacattatgtgtggagaagtggggaatc---cgttcgaaccccagcccctgtacaaattatccctggtagctaccaactgagctac |
17002906 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 141
Target Start/End: Complemental strand, 54240706 - 54240607
Alignment:
Q |
42 |
tagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacattt |
141 |
Q |
|
|
||||||| ||||||||||| |||||||||||| |||| ||||||||||||| |||||||||||||| ||| ||||| || |||| |||||||||||| |
|
|
T |
54240706 |
tagattcacacacattatgcgtggagaagtggaaaatccgaggttcgaaccccgacccctgcacatattgtccttggtagctgccaactgagctacattt |
54240607 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 148
Target Start/End: Complemental strand, 3313577 - 3313489
Alignment:
Q |
60 |
gtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatttccgggac |
148 |
Q |
|
|
|||||||||||||||||||||||| ||||||| ||||| |||||| ||||| ||| ||||| ||||||| ||||| ||| || |||||| |
|
|
T |
3313577 |
gtgtggagaagtggggaatctaggattcgaactccggctcctgcaaatattgtccttggtagctaccaactgagccacacttacgggac |
3313489 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 41259958 - 41260034
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctg |
117 |
Q |
|
|
|||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||| |||| ||| |||||| |
|
|
T |
41259958 |
ctagattcacacacattatgtgtggagaagtggggaattcgggggtcgaaccccggcccctacacaaattatccctg |
41260034 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 138
Target Start/End: Original strand, 51829562 - 51829658
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca |
138 |
Q |
|
|
|||||||| || |||||||||||||||||||| ||||||| |||||||||| || || |||||||| || | ||||||| ||||||| ||||||||| |
|
|
T |
51829562 |
ctagattcacatacattatgtgtggagaagtgaggaatctggggttcgaacaccagctcctgcacaaatgat-cctggtagctaccaactgagctaca |
51829658 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 52910392 - 52910443
Alignment:
Q |
40 |
actagattcgcacacattatgtgtggagaagtggggaatctagggttcgaac |
91 |
Q |
|
|
||||||||| ||||||||||||||||||||||||||||| ||||||| |||| |
|
|
T |
52910392 |
actagattcacacacattatgtgtggagaagtggggaatttagggtttgaac |
52910443 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 44 - 138
Target Start/End: Complemental strand, 55009622 - 55009528
Alignment:
Q |
44 |
gattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca |
138 |
Q |
|
|
||||| |||||||||||| |||||||||| | |||| ||||||||||||||| | || |||| ||| ||||| || ||||||||||||||||| |
|
|
T |
55009622 |
gattcacacacattatgtatggagaagtgagaaatccggggttcgaaccccggtctctacacaaattatccctaatagctaccaattgagctaca |
55009528 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 141
Target Start/End: Complemental strand, 6757340 - 6757240
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatt |
140 |
Q |
|
|
||||||| ||||||||||||||||| ||||| | |||||||||||| |||| | || ||||||| ||| ||| || || |||||| |||||||||||| |
|
|
T |
6757340 |
ctagatttacacacattatgtgtggaaaagtgagaaatctagggttcaaacctcaaccactgcacaaattatccttgatagctaccagttgagctacatt |
6757241 |
T |
 |
Q |
141 |
t |
141 |
Q |
|
|
| |
|
|
T |
6757240 |
t |
6757240 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 76
Target Start/End: Original strand, 11988936 - 11988971
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtgggga |
76 |
Q |
|
|
|||||||| ||||||||||||||||||||||||||| |
|
|
T |
11988936 |
ctagattcacacacattatgtgtggagaagtgggga |
11988971 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 106
Target Start/End: Original strand, 27100927 - 27100982
Alignment:
Q |
51 |
acacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcaca |
106 |
Q |
|
|
|||||||||||||||| ||||||| ||||| | |||||||||||| ||||||||| |
|
|
T |
27100927 |
acacattatgtgtggaaaagtgggaaatctggagttcgaaccccgatccctgcaca |
27100982 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 21177039 - 21177077
Alignment:
Q |
40 |
actagattcgcacacattatgtgtggagaagtggggaat |
78 |
Q |
|
|
|||||||| ||||||||||||||||||||||||||||| |
|
|
T |
21177039 |
actagatttacacacattatgtgtggagaagtggggaat |
21177077 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 9737623 - 9737688
Alignment:
Q |
83 |
ggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatttccgggac |
148 |
Q |
|
|
||||||||||| | |||||||||||| | || |||||| ||||||| |||||||||| | |||||| |
|
|
T |
9737623 |
ggttcgaaccctgacccctgcacataatatctctggtagctaccaactgagctacatctacgggac |
9737688 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 45118718 - 45118677
Alignment:
Q |
68 |
aagtggggaatctagggttcgaaccccggcccctgcacatat |
109 |
Q |
|
|
|||||||||||| ||||||||||||||||||||||| |||| |
|
|
T |
45118718 |
aagtggggaatcccgggttcgaaccccggcccctgcatatat |
45118677 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 95
Target Start/End: Original strand, 16231879 - 16231911
Alignment:
Q |
63 |
tggagaagtggggaatctagggttcgaaccccg |
95 |
Q |
|
|
||||||||||||| ||||||||||||||||||| |
|
|
T |
16231879 |
tggagaagtggggtatctagggttcgaaccccg |
16231911 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Complemental strand, 29226387 - 29226359
Alignment:
Q |
82 |
gggttcgaaccccggcccctgcacatatt |
110 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
29226387 |
gggttcgaaccccggcccctgcacatatt |
29226359 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 29645861 - 29645889
Alignment:
Q |
82 |
gggttcgaaccccggcccctgcacatatt |
110 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
29645861 |
gggttcgaaccccggcccctgcacatatt |
29645889 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 8757280 - 8757376
Alignment:
Q |
42 |
tagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca |
138 |
Q |
|
|
||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| | || |||||| ||||||| | ||||||| |
|
|
T |
8757280 |
tagattcacacacattatgtgtggagacgtggggaatccagggttcgaaccccggcccctgcacataatgtctctggtagctaccaactaagctaca |
8757376 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 148
Target Start/End: Complemental strand, 7550096 - 7550008
Alignment:
Q |
60 |
gtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatttccgggac |
148 |
Q |
|
|
|||||||||||||||||||| ||||||||||||||||||||||| ||| | || |||||| ||| ||| ||||||||| || |||||| |
|
|
T |
7550096 |
gtgtggagaagtggggaatccggggttcgaaccccggcccctgcaaataatgtctctggtagctatcaactgagctacacttacgggac |
7550008 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 23991249 - 23991292
Alignment:
Q |
61 |
tgtggagaagtggggaatctagggttcgaaccccggcccctgca |
104 |
Q |
|
|
||||||||||||||| || |||||||||||||||||||||||| |
|
|
T |
23991249 |
tgtggagaagtggggtgtccagggttcgaaccccggcccctgca |
23991292 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 43109272 - 43109302
Alignment:
Q |
82 |
gggttcgaaccccggcccctgcacatatttt |
112 |
Q |
|
|
||||||||||||||||||||||||||||||| |
|
|
T |
43109272 |
gggttcgaaccccggcccctgcacatatttt |
43109302 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 2098848 - 2098752
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca |
138 |
Q |
|
|
|||||||| |||||||||| ||||||||||||| ||||| ||||||| | || |||||| |||||| | ||| | ||| ||||||| ||||||||| |
|
|
T |
2098848 |
ctagattcacacacattatatgtggagaagtggagaatccggggttcggattcc-gcccctacacataatatccattgtagctaccaactgagctaca |
2098752 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 24134658 - 24134686
Alignment:
Q |
82 |
gggttcgaaccccggcccctgcacatatt |
110 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
24134658 |
gggttcgaaccccggcccctgcacatatt |
24134686 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 33207295 - 33207247
Alignment:
Q |
56 |
ttatgtgtggagaagtggggaatctagggttcgaaccccggcccctgca |
104 |
Q |
|
|
|||| ||||||||||||||| || ||||||||||||||||||||||| |
|
|
T |
33207295 |
ttatttgtggagaagtggggtgtccggggttcgaaccccggcccctgca |
33207247 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 34702347 - 34702375
Alignment:
Q |
82 |
gggttcgaaccccggcccctgcacatatt |
110 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
34702347 |
gggttcgaaccccggcccctgcacatatt |
34702375 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 7326340 - 7326423
Alignment:
Q |
45 |
attcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaa |
128 |
Q |
|
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||| || ||| ||||||||| ||||||| |
|
|
T |
7326340 |
attcacacacattatgtgtggagaagtggggaatctagggttcgaaacccgacccctgctcaaattatccctggtagctaccaa |
7326423 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 6922639 - 6922747
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatt |
140 |
Q |
|
|
|||||||| |||||||||| |||||||||||||||||||| | ||| |||||||| |||||||||| ||| | | ||||| ||||||| ||| ||||| | |
|
|
T |
6922639 |
ctagattcacacacattatatgtggagaagtggggaatctggagtttgaaccccgacccctgcacaaattattcatggtagctaccaactgaactacact |
6922738 |
T |
 |
Q |
141 |
tccgggact |
149 |
Q |
|
|
| ||||||| |
|
|
T |
6922739 |
tacgggact |
6922747 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 56 - 148
Target Start/End: Original strand, 20599412 - 20599504
Alignment:
Q |
56 |
ttatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatttccgggac |
148 |
Q |
|
|
|||||||||||||||||||||||| |||||| ||||||| ||| |||||||| | ||||||||| ||||||| ||||||||| || |||||| |
|
|
T |
20599412 |
ttatgtgtggagaagtggggaatccggggttcaaaccccgacccttgcacataatatccctggtagctaccaactgagctacacttacgggac |
20599504 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 43 - 138
Target Start/End: Original strand, 21023693 - 21023788
Alignment:
Q |
43 |
agattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca |
138 |
Q |
|
|
|||||| |||||||||||||||||||||||| ||||| ||||||||| | | | ||| |||| ||| ||||||||| ||||||||||||||||| |
|
|
T |
21023693 |
agattcacacacattatgtgtggagaagtggagaatccggggttcgaatctcagttcctacacaaattatccctggtagctaccaattgagctaca |
21023788 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 5925684 - 5925619
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcaca |
106 |
Q |
|
|
|||||||| ||||||||||||||| |||||||||||||| ||| || ||||||| ||||||||||| |
|
|
T |
5925684 |
ctagattcacacacattatgtgtgaagaagtggggaatccaggatttgaaccccagcccctgcaca |
5925619 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 12606753 - 12606656
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca |
138 |
Q |
|
|
|||||||| |||||||||| |||| ||||||||||||||| ||||||||||| || ||| |||| ||| ||||| ||| ||||||| ||||||||| |
|
|
T |
12606753 |
ctagattcacacacattatatgtgaagaagtggggaatctggggttcgaacctcgattcctacacaaattatccctagtagctaccaactgagctaca |
12606656 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 492987 - 492944
Alignment:
Q |
61 |
tgtggagaagtggggaatctagggttcgaaccccggcccctgca |
104 |
Q |
|
|
||||||||||||||| || |||||||||||||||||||||||| |
|
|
T |
492987 |
tgtggagaagtggggtgtccagggttcgaaccccggcccctgca |
492944 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 29045867 - 29045785
Alignment:
Q |
42 |
tagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaacta |
124 |
Q |
|
|
||||||| |||||||||||| ||||||||||||||||| || ||||| | || ||| ||||||| | | ||||| ||||||| |
|
|
T |
29045867 |
tagattcacacacattatgtatggagaagtggggaatccgggattcgagctccagcctctgcacacaatgtccctagtaacta |
29045785 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 6228294 - 6228322
Alignment:
Q |
82 |
gggttcgaaccccggcccctgcacatatt |
110 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
6228294 |
gggttcgaaccccggcccctgcacatatt |
6228322 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 15717047 - 15717075
Alignment:
Q |
82 |
gggttcgaaccccggcccctgcacatatt |
110 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
15717047 |
gggttcgaaccccggcccctgcacatatt |
15717075 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 18903401 - 18903429
Alignment:
Q |
82 |
gggttcgaaccccggcccctgcacatatt |
110 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
18903401 |
gggttcgaaccccggcccctgcacatatt |
18903429 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 41 - 148
Target Start/End: Original strand, 34319820 - 34319927
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatt |
140 |
Q |
|
|
|||||||| |||||||||||||| |||||||| |||||| |||||| ||| || |||||||||||| ||| |||||| || ||||||| |||| |||| | |
|
|
T |
34319820 |
ctagattcacacacattatgtgtagagaagtgaggaatccagggttagaatcctggcccctgcacaaattatccctgatagctaccaactgaggtacact |
34319919 |
T |
 |
Q |
141 |
tccgggac |
148 |
Q |
|
|
| |||||| |
|
|
T |
34319920 |
tacgggac |
34319927 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 21297471 - 21297412
Alignment:
Q |
61 |
tgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggta |
120 |
Q |
|
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
T |
21297471 |
tgtggagaagtggggaatccgaggttcgaaccccggcccctgcacaaattttccctggta |
21297412 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 9198943 - 9199042
Alignment:
Q |
50 |
cacacattatgtgtggagaagtggggaatctagggttcgaaccccggccc-ctgcacatattttccctggtaactaccaattgagctacatttccgggac |
148 |
Q |
|
|
||||||||||||||||||||||||| ||| |||||||||||| |||| ||||||| ||| || |||||| ||||||| ||||||||| || |||||| |
|
|
T |
9198943 |
cacacattatgtgtggagaagtgggaaattcgaggttcgaaccccagcccgctgcacaaattatctctggtagctaccaactgagctacacttacgggac |
9199042 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 9932020 - 9932105
Alignment:
Q |
42 |
tagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactacca |
127 |
Q |
|
|
||||||| |||||||||| ||||||||||||||||||| ||||||||| |||||| ||| ||| ||| ||||| ||| |||||| |
|
|
T |
9932020 |
tagattcacacacattatatgtggagaagtggggaatccggggttcgaattccggccactgtacaaattatcccttgtagctacca |
9932105 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 14368421 - 14368474
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaacccc |
94 |
Q |
|
|
|||||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
T |
14368421 |
ctagattcacacacattatgtgtggagaagtggggaatccgtggttcgaacccc |
14368474 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 37123659 - 37123562
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca |
138 |
Q |
|
|
|||||||| ||||||||||||||||||||||| | ||| | ||||||||| |||| |||| |||| ||| |||||| ||||||| || ||| ||||| |
|
|
T |
37123659 |
ctagattcacacacattatgtgtggagaagtgagaaatttggggttcgaatcccgaaccctacacaaattatccctgataactactaactgaactaca |
37123562 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 44287894 - 44287856
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatc |
79 |
Q |
|
|
|||||||| |||||||||||||||||||||||||||||| |
|
|
T |
44287894 |
ctagattcacacacattatgtgtggagaagtggggaatc |
44287856 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 31068899 - 31068995
Alignment:
Q |
42 |
tagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca |
138 |
Q |
|
|
||||||| ||||||||| |||||||||||||||||||| | |||| ||| ||| ||||| |||| ||| || || || ||||||| ||||||||| |
|
|
T |
31068899 |
tagattcacacacattaagtgtggagaagtggggaatccggagttcaaactccgacccctacacaaattatcaatgttagctaccaactgagctaca |
31068995 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 8915667 - 8915614
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaacccc |
94 |
Q |
|
|
|||||||| |||||||||| | ||||||||||||||||| |||| |||||||| |
|
|
T |
8915667 |
ctagattcacacacattatttatggagaagtggggaatccggggtacgaacccc |
8915614 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 23948710 - 23948762
Alignment:
Q |
44 |
gattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggccc |
99 |
Q |
|
|
||||| ||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
T |
23948710 |
gattcacacacattatgtgtg---aagtggggaatccggggttcgaaccccggccc |
23948762 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 28646898 - 28646946
Alignment:
Q |
61 |
tgtggagaagtggggaatctagggttcgaaccccggcccctgcacatat |
109 |
Q |
|
|
||||||||||| ||| ||| ||||||||||||||||||||||| |||| |
|
|
T |
28646898 |
tgtggagaagtagggggtctggggttcgaaccccggcccctgcatatat |
28646946 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 18)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 30327758 - 30327661
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca |
138 |
Q |
|
|
|||||||| |||| ||||||||||||||||||| |||| ||||||||||||||||||||||| | ||| || ||| || ||||||| ||||||||| |
|
|
T |
30327758 |
ctagattcacacatattatgtgtggagaagtggcgaattcggggttcgaaccccggcccctgcataaattatctctgatagctaccaactgagctaca |
30327661 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 138
Target Start/End: Original strand, 43406018 - 43406106
Alignment:
Q |
50 |
cacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca |
138 |
Q |
|
|
|||||||||||||||||||||||| |||||| ||||||||| |||| || |||||| ||| || |||||| ||||||| ||||||||| |
|
|
T |
43406018 |
cacacattatgtgtggagaagtggagaatctgaggttcgaactccggtccttgcacaaattatctctggtagctaccaactgagctaca |
43406106 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 60 - 138
Target Start/End: Original strand, 28580436 - 28580514
Alignment:
Q |
60 |
gtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca |
138 |
Q |
|
|
||||||||||||||||||||| |||||||||||| ||| |||||| | ||| || |||||| ||| ||| ||||||||| |
|
|
T |
28580436 |
gtgtggagaagtggggaatctggggttcgaaccctggctcctgcaaacattgtctctggtagctatcaactgagctaca |
28580514 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 40 - 138
Target Start/End: Original strand, 31478692 - 31478790
Alignment:
Q |
40 |
actagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca |
138 |
Q |
|
|
||||||||| |||||||||||||| ||||||||| ||||| |||||||| ||||||| |||||| ||| || | ||| ||||||||||||||||| |
|
|
T |
31478692 |
actagattcacacacattatgtgtagagaagtggagaatccgaagttcgaactccggcccttgcacaaattatctccggtggctaccaattgagctaca |
31478790 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 32398320 - 32398235
Alignment:
Q |
40 |
actagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactac |
125 |
Q |
|
|
||||||||| || |||||||||||||||||||||||||| |||||||||||| | |||||||||| | |||||| ||||||| |
|
|
T |
32398320 |
actagattcacatacattatgtgtggagaagtggggaatacgttgttcgaaccccgactcctgcacataatatccctgataactac |
32398235 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 148
Target Start/End: Complemental strand, 11361414 - 11361322
Alignment:
Q |
56 |
ttatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatttccgggac |
148 |
Q |
|
|
|||||||||||||||||||||||| | | |||||| | ||||||||||| ||| ||| ||||||||||||| |||||| || || |||||| |
|
|
T |
11361414 |
ttatgtgtggagaagtggggaatccaatgatcgaactctagcccctgcacaaattatccttggtaactaccaactgagctccacttacgggac |
11361322 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 39969013 - 39968933
Alignment:
Q |
45 |
attcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactac |
125 |
Q |
|
|
|||||||||||||||||||||||||||||| |||| || |||| |||| | || ||| |||||| | ||||||||| |||| |
|
|
T |
39969013 |
attcgcacacattatgtgtggagaagtgggaaatccagagttcaaacctcagctcctacacataatgtccctggtagctac |
39968933 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 141
Target Start/End: Complemental strand, 20706607 - 20706508
Alignment:
Q |
42 |
tagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacattt |
141 |
Q |
|
|
||||||| ||||||||| |||||||||||||| |||||| ||||| |||| | || ||||||| ||| || ||||| ||||||| |||||||||||| |
|
|
T |
20706607 |
tagattcacacacattacgtgtggagaagtggaaaatctaaggttcaaaccttgacctctgcacaaattatcgttggtagctaccaactgagctacattt |
20706508 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 24793577 - 24793490
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaa |
128 |
Q |
|
|
|||||||| || ||||||||||| ||||| |||| ||||| ||||||| |||||| |||||||||| ||| || ||| || ||||||| |
|
|
T |
24793577 |
ctagattcacatacattatgtgtagagaaatgggaaatctggggttcggaccccgacccctgcacaaattatctctgatagctaccaa |
24793490 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 138
Target Start/End: Original strand, 36730206 - 36730283
Alignment:
Q |
60 |
gtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca |
138 |
Q |
|
|
|||||||||||||||||||| |||||| || | |||||||||| ||||| ||||||||| ||||||| ||||||||| |
|
|
T |
36730206 |
gtgtggagaagtggggaatccggggttc-aaatctggcccctgcaaatattgtccctggtagctaccaactgagctaca |
36730283 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 7171813 - 7171770
Alignment:
Q |
61 |
tgtggagaagtggggaatctagggttcgaaccccggcccctgca |
104 |
Q |
|
|
||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
T |
7171813 |
tgtggagaagtggggtgtctggggttcgaaccccggcccctgca |
7171770 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 8032958 - 8032887
Alignment:
Q |
45 |
attcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccct |
116 |
Q |
|
|
|||| ||||||||||||||||||| |||| |||| | ||||||||| ||| |||||||||| ||| ||||| |
|
|
T |
8032958 |
attcacacacattatgtgtggagatgtggagaatttggggttcgaatcccaacccctgcacaaattgtccct |
8032887 |
T |
 |
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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 24133041 - 24132998
Alignment:
Q |
61 |
tgtggagaagtggggaatctagggttcgaaccccggcccctgca |
104 |
Q |
|
|
||||||||||||||| ||| | |||||||||||||||||||||| |
|
|
T |
24133041 |
tgtggagaagtggggtatccaaggttcgaaccccggcccctgca |
24132998 |
T |
 |
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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 15409251 - 15409197
Alignment:
Q |
45 |
attcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggccc |
99 |
Q |
|
|
|||| |||||||||||||| ||||||||||||||| || ||| ||||||||||| |
|
|
T |
15409251 |
attcacacacattatgtgtaaagaagtggggaatctgggattcaaaccccggccc |
15409197 |
T |
 |
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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 12375446 - 12375474
Alignment:
Q |
82 |
gggttcgaaccccggcccctgcacatatt |
110 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
12375446 |
gggttcgaaccccggcccctgcacatatt |
12375474 |
T |
 |
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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Complemental strand, 31250208 - 31250180
Alignment:
Q |
82 |
gggttcgaaccccggcccctgcacatatt |
110 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
31250208 |
gggttcgaaccccggcccctgcacatatt |
31250180 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 38503291 - 38503319
Alignment:
Q |
82 |
gggttcgaaccccggcccctgcacatatt |
110 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
38503291 |
gggttcgaaccccggcccctgcacatatt |
38503319 |
T |
 |
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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Complemental strand, 43227927 - 43227899
Alignment:
Q |
82 |
gggttcgaaccccggcccctgcacatatt |
110 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
43227927 |
gggttcgaaccccggcccctgcacatatt |
43227899 |
T |
 |
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Target: scaffold0166 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0166
Description:
Target: scaffold0166; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 35960 - 35873
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaa |
128 |
Q |
|
|
|||||||| || ||||||||||| ||||| |||| ||||| ||||||| |||||| |||||||||| ||| || ||| || ||||||| |
|
|
T |
35960 |
ctagattcacatacattatgtgtagagaaatgggaaatctggggttcggaccccgacccctgcacaaattatctctgatagctaccaa |
35873 |
T |
 |
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Target: scaffold0178 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0178
Description:
Target: scaffold0178; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 9708 - 9746
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatc |
79 |
Q |
|
|
|||||||| |||||||||||||||||||||||||||||| |
|
|
T |
9708 |
ctagattcacacacattatgtgtggagaagtggggaatc |
9746 |
T |
 |
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Target: scaffold0040 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 148
Target Start/End: Original strand, 58650 - 58755
Alignment:
Q |
41 |
ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatt |
140 |
Q |
|
|
||||| || |||| || ||||||||||||||||| |||| |||||||||| |||||| ||||| ||||| || || ||||||| ||||||||||| |
|
|
T |
58650 |
ctagaatcacacatataatgtgtggagaagtgggaaatccggggttcgaacttcggccc--gcacaatttttctttgatagctaccaactgagctacatt |
58747 |
T |
 |
Q |
141 |
tccgggac |
148 |
Q |
|
|
| |||||| |
|
|
T |
58748 |
tacgggac |
58755 |
T |
 |
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Target: scaffold0035 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 23807 - 23756
Alignment:
Q |
40 |
actagattcgcacacattatgtgtggagaagtggggaatctagggttcgaacc |
92 |
Q |
|
|
||||||||| ||| ||||||||||| |||||||||||||| | |||||||||| |
|
|
T |
23807 |
actagattcacacgcattatgtgtgaagaagtggggaatcca-ggttcgaacc |
23756 |
T |
 |
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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Complemental strand, 419773 - 419745
Alignment:
Q |
82 |
gggttcgaaccccggcccctgcacatatt |
110 |
Q |
|
|
||||||||||||||||||||||||||||| |
|
|
T |
419773 |
gggttcgaaccccggcccctgcacatatt |
419745 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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