View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0253_low_7 (Length: 480)

Name: NF0253_low_7
Description: NF0253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0253_low_7
NF0253_low_7
[»] chr7 (20 HSPs)
chr7 (41-470)||(13054271-13054698)
chr7 (40-138)||(24250150-24250248)
chr7 (44-148)||(9667239-9667343)
chr7 (50-108)||(5808398-5808456)
chr7 (41-138)||(23198530-23198626)
chr7 (41-136)||(25091169-25091263)
chr7 (41-90)||(27227269-27227318)
chr7 (61-134)||(36876997-36877070)
chr7 (41-138)||(47684492-47684589)
chr7 (41-149)||(45967366-45967474)
chr7 (61-104)||(27788311-27788354)
chr7 (61-104)||(27791467-27791510)
chr7 (41-100)||(37307703-37307762)
chr7 (61-104)||(42435205-42435248)
chr7 (45-79)||(27744643-27744677)
chr7 (43-135)||(44165893-44165986)
chr7 (61-110)||(47440795-47440844)
chr7 (60-104)||(22771433-22771477)
chr7 (41-73)||(29551169-29551201)
chr7 (82-110)||(40273854-40273882)
[»] chr4 (17 HSPs)
chr4 (186-470)||(105794-106078)
chr4 (210-470)||(166331-166591)
chr4 (41-148)||(35130616-35130723)
chr4 (41-148)||(50263995-50264101)
chr4 (41-138)||(31351678-31351775)
chr4 (41-148)||(13538260-13538367)
chr4 (63-138)||(55967786-55967861)
chr4 (41-149)||(35010388-35010496)
chr4 (41-138)||(28091334-28091431)
chr4 (42-148)||(25273075-25273180)
chr4 (45-104)||(10601906-10601965)
chr4 (52-138)||(40981802-40981888)
chr4 (61-110)||(33933724-33933773)
chr4 (41-138)||(38415500-38415597)
chr4 (45-138)||(42657508-42657601)
chr4 (60-149)||(44294295-44294384)
chr4 (82-110)||(13210198-13210226)
[»] scaffold0013 (1 HSPs)
scaffold0013 (202-470)||(90709-90977)
[»] chr8 (17 HSPs)
chr8 (210-454)||(5719500-5719744)
chr8 (210-454)||(5687384-5687628)
chr8 (210-454)||(5666314-5666558)
chr8 (41-138)||(28300093-28300190)
chr8 (41-147)||(12959704-12959810)
chr8 (44-106)||(15837177-15837239)
chr8 (357-461)||(5652914-5653018)
chr8 (41-138)||(1028723-1028820)
chr8 (41-76)||(19756433-19756468)
chr8 (61-104)||(38107459-38107502)
chr8 (61-104)||(38283166-38283209)
chr8 (64-110)||(2908079-2908125)
chr8 (55-108)||(9587602-9587655)
chr8 (61-102)||(21133051-21133092)
chr8 (82-110)||(13906660-13906688)
chr8 (82-110)||(36103956-36103984)
chr8 (82-110)||(41454861-41454889)
[»] chr3 (18 HSPs)
chr3 (210-470)||(12135840-12136100)
chr3 (41-149)||(38745298-38745406)
chr3 (44-137)||(17002906-17002996)
chr3 (42-141)||(54240607-54240706)
chr3 (60-148)||(3313489-3313577)
chr3 (41-117)||(41259958-41260034)
chr3 (41-138)||(51829562-51829658)
chr3 (40-91)||(52910392-52910443)
chr3 (44-138)||(55009528-55009622)
chr3 (41-141)||(6757240-6757340)
chr3 (41-76)||(11988936-11988971)
chr3 (51-106)||(27100927-27100982)
chr3 (40-78)||(21177039-21177077)
chr3 (83-148)||(9737623-9737688)
chr3 (68-109)||(45118677-45118718)
chr3 (63-95)||(16231879-16231911)
chr3 (82-110)||(29226359-29226387)
chr3 (82-110)||(29645861-29645889)
[»] chr1 (8 HSPs)
chr1 (42-138)||(8757280-8757376)
chr1 (60-148)||(7550008-7550096)
chr1 (61-104)||(23991249-23991292)
chr1 (82-112)||(43109272-43109302)
chr1 (41-138)||(2098752-2098848)
chr1 (82-110)||(24134658-24134686)
chr1 (56-104)||(33207247-33207295)
chr1 (82-110)||(34702347-34702375)
[»] chr6 (11 HSPs)
chr6 (45-128)||(7326340-7326423)
chr6 (41-149)||(6922639-6922747)
chr6 (56-148)||(20599412-20599504)
chr6 (43-138)||(21023693-21023788)
chr6 (41-106)||(5925619-5925684)
chr6 (41-138)||(12606656-12606753)
chr6 (61-104)||(492944-492987)
chr6 (42-124)||(29045785-29045867)
chr6 (82-110)||(6228294-6228322)
chr6 (82-110)||(15717047-15717075)
chr6 (82-110)||(18903401-18903429)
[»] chr2 (11 HSPs)
chr2 (41-148)||(34319820-34319927)
chr2 (61-120)||(21297412-21297471)
chr2 (50-148)||(9198943-9199042)
chr2 (42-127)||(9932020-9932105)
chr2 (41-94)||(14368421-14368474)
chr2 (41-138)||(37123562-37123659)
chr2 (41-79)||(44287856-44287894)
chr2 (42-138)||(31068899-31068995)
chr2 (41-94)||(8915614-8915667)
chr2 (44-99)||(23948710-23948762)
chr2 (61-109)||(28646898-28646946)
[»] chr5 (18 HSPs)
chr5 (41-138)||(30327661-30327758)
chr5 (50-138)||(43406018-43406106)
chr5 (60-138)||(28580436-28580514)
chr5 (40-138)||(31478692-31478790)
chr5 (40-125)||(32398235-32398320)
chr5 (56-148)||(11361322-11361414)
chr5 (45-125)||(39968933-39969013)
chr5 (42-141)||(20706508-20706607)
chr5 (41-128)||(24793490-24793577)
chr5 (60-138)||(36730206-36730283)
chr5 (61-104)||(7171770-7171813)
chr5 (45-116)||(8032887-8032958)
chr5 (61-104)||(24132998-24133041)
chr5 (45-99)||(15409197-15409251)
chr5 (82-110)||(12375446-12375474)
chr5 (82-110)||(31250180-31250208)
chr5 (82-110)||(38503291-38503319)
chr5 (82-110)||(43227899-43227927)
[»] scaffold0166 (1 HSPs)
scaffold0166 (41-128)||(35873-35960)
[»] scaffold0178 (1 HSPs)
scaffold0178 (41-79)||(9708-9746)
[»] scaffold0040 (1 HSPs)
scaffold0040 (41-148)||(58650-58755)
[»] scaffold0035 (1 HSPs)
scaffold0035 (40-92)||(23756-23807)
[»] scaffold0001 (1 HSPs)
scaffold0001 (82-110)||(419745-419773)


Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 41 - 470
Target Start/End: Complemental strand, 13054698 - 13054271
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatt 140  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |    
13054698 ctagattcgcacacattatgtgtggagaagtgggaaatctggggttcgaaccccggcccctgcacatattttccctggtagctaccaattgagccacagt 13054599  T
141 tccgggactcacacaattgtctactctagttgaagttggagaatgattagtaataattactcaattatgaaccttttttgggcatgaaagatagctctct 240  Q
    || ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
13054598 tctgggactcaca--attgtctactctagttgaagttggagaatgattagtaataattactcaattatgaaccttttttgggcatgaaagatagctctct 13054501  T
241 ccccacccaccatcctctctttgtgtcgagagaagaaatttaacagctttacgaatcgcaacagaattggtataagtgtttccagcagctgctaaaccac 340  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||| |    
13054500 ccccacccaccatcctctctttgtgttgagagaagaaattgaacagctttacgaatcacaacagaattgctataagtctttccagcagctgctaaacctc 13054401  T
341 caagagcaaaataagtaccataaataaagcaaattccccaacttccataccatgaaccatcatctttttgtatatcttcaatgaatctaactgcattgcg 440  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||      
13054400 caagagcaaaataagtaccataaatgaagcaaattccccaacttccataccatgaaccatcatctttttgtgtatcttcaatgaatctaactgcattgtc 13054301  T
441 aatgaaattctctatctctttcttcctatg 470  Q
    |||||||||||||||||| |||||||||||    
13054300 aatgaaattctctatctcgttcttcctatg 13054271  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 138
Target Start/End: Original strand, 24250150 - 24250248
Alignment:
40 actagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca 138  Q
    ||||||||| ||||||||||||||||| |||||| ||||| ||||||||||| || ||||||||||||| | | | ||||| ||||||| |||| ||||    
24250150 actagattcacacacattatgtgtggaaaagtggagaatccagggttcgaacacccgcccctgcacataatgttcatggtagctaccaactgagttaca 24250248  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 9667239 - 9667343
Alignment:
44 gattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatttcc 143  Q
    ||||| |||||||||||| |||||||||||| ||| | |||||||||| || |||||| |||| ||| || ||| || ||||||| ||||||||| || |    
9667239 gattcacacacattatgtatggagaagtgggaaatttggggttcgaactccagcccctacacaaattatctctgatagctaccaactgagctacacttac 9667338  T
144 gggac 148  Q
    |||||    
9667339 gggac 9667343  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 5808398 - 5808456
Alignment:
50 cacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacata 108  Q
    ||||||||||||||||||||||| ||||||  |||||||||||||  ||||||||||||    
5808398 cacacattatgtgtggagaagtgaggaatccggggttcgaaccccaacccctgcacata 5808456  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 138
Target Start/End: Original strand, 23198530 - 23198626
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca 138  Q
    |||||||  ||||||||||||||||||||||||||||||  ||||| |||||||  |||||||||| ||| ||| || || ||| ||| |||||||||    
23198530 ctagatttacacacattatgtgtggagaagtggggaatc-ggggtttgaaccccaacccctgcacaaattatccttgatagctatcaactgagctaca 23198626  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 136
Target Start/End: Complemental strand, 25091263 - 25091169
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagcta 136  Q
    |||||||| ||||||||||||||| |||||| |  ||||| | ||| ||||| || |||||||||| ||| ||||||||| ||||||| |||||||    
25091263 ctagattcacacacattatgtgtgaagaagt-gaaaatctggagtttgaacctcgacccctgcacaaattatccctggtagctaccaactgagcta 25091169  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 27227269 - 27227318
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaa 90  Q
    ||||||||  |||||||||||||||||||||||||||||| || ||||||    
27227269 ctagattcaaacacattatgtgtggagaagtggggaatctgggattcgaa 27227318  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 36876997 - 36877070
Alignment:
61 tgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagc 134  Q
    |||||||||||||| ||||  |||||||||||||| |||||||||| ||| ||| || || ||||||| |||||    
36876997 tgtggagaagtgggaaatccggggttcgaaccccgacccctgcacaaattatccatgttagctaccaactgagc 36877070  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 138
Target Start/End: Original strand, 47684492 - 47684589
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca 138  Q
    |||||||| |||||||||||| ||||||||| || ||||  |||||| ||||||  |||||||||| ||| ||| ||||| |  |||| |||||||||    
47684492 ctagattcacacacattatgtatggagaagtaggaaatccggggttcaaaccccaacccctgcacaaattatccttggtagcccccaactgagctaca 47684589  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 45967366 - 45967474
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatt 140  Q
    |||||||| ||||||||||||||| | ||||| |||||   |||||||||||||| ||| || ||||| | |||   ||| ||||||| ||||||||| |    
45967366 ctagattcacacacattatgtgtgaaaaagtgaggaattcggggttcgaaccccgacccatgtacataatatccactgtagctaccaactgagctacact 45967465  T
141 tccgggact 149  Q
    | |||||||    
45967466 tacgggact 45967474  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 27788354 - 27788311
Alignment:
61 tgtggagaagtggggaatctagggttcgaaccccggcccctgca 104  Q
    |||||||||||||||  ||| |||||||||||||||||||||||    
27788354 tgtggagaagtggggtgtctggggttcgaaccccggcccctgca 27788311  T

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Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 27791510 - 27791467
Alignment:
61 tgtggagaagtggggaatctagggttcgaaccccggcccctgca 104  Q
    |||||||||||||||  ||| |||||||||||||||||||||||    
27791510 tgtggagaagtggggtgtctggggttcgaaccccggcccctgca 27791467  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 37307762 - 37307703
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccc 100  Q
    ||||||||  ||||||||| |||||||||||||||||||  | |||||||||||| ||||    
37307762 ctagattcaaacacattatttgtggagaagtggggaatccggagttcgaaccccgacccc 37307703  T

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Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 42435205 - 42435248
Alignment:
61 tgtggagaagtggggaatctagggttcgaaccccggcccctgca 104  Q
    |||||||||||| || |||| |||||||||||||||||||||||    
42435205 tgtggagaagtgaggtatctggggttcgaaccccggcccctgca 42435248  T

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Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 27744677 - 27744643
Alignment:
45 attcgcacacattatgtgtggagaagtggggaatc 79  Q
    |||| ||||||||||||||||||||||||||||||    
27744677 attcacacacattatgtgtggagaagtggggaatc 27744643  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 135
Target Start/End: Original strand, 44165893 - 44165986
Alignment:
43 agattcgcacacattatgtgtggagaagt-ggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagct 135  Q
    |||||| |||||||||||||||||||||| |||||||  | |||||||| ||||  |  |||| | ||| ||||||||| ||||||| ||||||    
44165893 agattcacacacattatgtgtggagaagtgggggaattcaaggttcgaatcccgatctttgcataaattatccctggtagctaccaactgagct 44165986  T

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Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 47440795 - 47440844
Alignment:
61 tgtggagaagtggggaatctagggttcgaaccccggcccctgcacatatt 110  Q
    |||||||||||||||  || ||||||||||||||| |||||||| |||||    
47440795 tgtggagaagtggggtgtccagggttcgaaccccgacccctgcatatatt 47440844  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 22771477 - 22771433
Alignment:
60 gtgtggagaagtggggaatctagggttcgaaccccggcccctgca 104  Q
    |||||||||||| |||||||| |||||||| || |||||||||||    
22771477 gtgtggagaagtcgggaatctggggttcgagcctcggcccctgca 22771433  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 29551201 - 29551169
Alignment:
41 ctagattcgcacacattatgtgtggagaagtgg 73  Q
    ||||||||||||||||||||| |||||||||||    
29551201 ctagattcgcacacattatgtatggagaagtgg 29551169  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Complemental strand, 40273882 - 40273854
Alignment:
82 gggttcgaaccccggcccctgcacatatt 110  Q
    |||||||||||||||||||||||||||||    
40273882 gggttcgaaccccggcccctgcacatatt 40273854  T

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Target: chr4 (Bit Score: 165; Significance: 5e-88; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 186 - 470
Target Start/End: Complemental strand, 106078 - 105794
Alignment:
186 attagtaataattactcaattatgaaccttttttgggcatgaaagatagctctctccccacccaccatcctctctttgtgtcgagagaagaaatttaaca 285  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||| | ||||||||||||||||    
106078 attagtaataaatactcaattatgaaccttttttgggcttgaaagatagctctccccccacccaccatcctctctctgtgttgtgagaagaaatttaaca 105979  T
286 gctttacgaatcgcaacagaattggtataagtgtttccagcagctgctaaaccaccaagagcaaaataagtaccataaataaagcaaattccccaacttc 385  Q
    ||||| ||||| ||| |  ||||||||||||| || |||||||||||||||||||||||||||||  ||| ||||||| | ||||||| ||||||  |||    
105978 gctttgcgaatagcagcgcaattggtataagtcttgccagcagctgctaaaccaccaagagcaaaccaagaaccataagtgaagcaaactccccagtttc 105879  T
386 cataccatgaaccatcatctttttgtatatcttcaatgaatctaactgcattgcgaatgaaattctctatctctttcttcctatg 470  Q
    ||||||||||||||||  || ||||||||||||||||||||| |||||| | |   |||||||||||||||||||||||||||||    
105878 cataccatgaaccatcggctgtttgtatatcttcaatgaatcgaactgcctcggagatgaaattctctatctctttcttcctatg 105794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 210 - 470
Target Start/End: Complemental strand, 166591 - 166331
Alignment:
210 aaccttttttgggcatgaaagatagctctctccccacccaccatcctctctttgtgtcgagagaagaaatttaacagctttacgaatcgcaacagaattg 309  Q
    |||||||||||||||||||||||||||||| |||||||||||||| | ||  ||| |    ||||||||||||||||| || ||||||| | || |||||    
166591 aaccttttttgggcatgaaagatagctctccccccacccaccatcttttccctgtattctcagaagaaatttaacagccttgcgaatcgtagcacaattg 166492  T
310 gtataagtgtttccagcagctgctaaaccaccaagagcaaaataagtaccataaataaagcaaattccccaacttccataccatgaaccatcatcttttt 409  Q
    |||||||| ||||||||||||||||||||||||||||||||  ||  ||||||| ||||||||| ||||||  |||||||||||||||||||  || |||    
166491 gtataagtctttccagcagctgctaaaccaccaagagcaaaccaacaaccataagtaaagcaaactccccagtttccataccatgaaccatcggctgttt 166392  T
410 gtatatcttcaatgaatctaactgcattgcgaatgaaattctctatctctttcttcctatg 470  Q
    |||||||||||||||||| |||||| | |   |||||||||||||||||||||||||||||    
166391 gtatatcttcaatgaatcgaactgcctcggagatgaaattctctatctctttcttcctatg 166331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 148
Target Start/End: Original strand, 35130616 - 35130723
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatt 140  Q
    |||||||| ||||||| ||||||| ||||||||| ||||  ||||||||||||||||||||||||| ||| || |||||| ||||||| ||| ||||| |    
35130616 ctagattcacacacataatgtgtgaagaagtgggaaatccggggttcgaaccccggcccctgcacaaattatctctggtagctaccaactgaactacact 35130715  T
141 tccgggac 148  Q
    | ||||||    
35130716 tacgggac 35130723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 41 - 148
Target Start/End: Original strand, 50263995 - 50264101
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatt 140  Q
    |||||||| ||||||| ||||||||||||||||||||||  || ||||| |||||||||||||||| ||| ||||| ||| ||||||| |||| |||| |    
50263995 ctagattcacacacatcatgtgtggagaagtggggaatccgggtttcgagccccggcccctgcacaaattatccct-gtagctaccaactgagttacact 50264093  T
141 tccgggac 148  Q
    | ||||||    
50264094 tacgggac 50264101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 41 - 138
Target Start/End: Original strand, 31351678 - 31351775
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca 138  Q
    |||||||| |||| ||||||||||||||| |||| ||||  | |||||||||||| |||||||||| ||| || |||||| ||||||| |||||||||    
31351678 ctagattcacacatattatgtgtggagaaatgggaaatccggagttcgaaccccgacccctgcacaaattatctctggtagctaccaactgagctaca 31351775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 41 - 148
Target Start/End: Original strand, 13538260 - 13538367
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatt 140  Q
    |||||||| |||||||||||| |||||||||||| ||| | |||||||||| || |||||| |||| ||| || ||| || ||||||| ||||||||| |    
13538260 ctagattcacacacattatgtatggagaagtgggaaatttggggttcgaactccagcccctacacaaattatctctgatagctaccaactgagctacact 13538359  T
141 tccgggac 148  Q
    | ||||||    
13538360 tacgggac 13538367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 55967861 - 55967786
Alignment:
63 tggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca 138  Q
    |||||||||||||||||  |||||||||||||||||||| |||| ||| ||| |||||  ||||||||||||||||    
55967861 tggagaagtggggaatccggggttcgaaccccggcccctacacaaattatccttggtagttaccaattgagctaca 55967786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 35010388 - 35010496
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatt 140  Q
    ||||||||  |||||||||||||||||||||||| ||||  | |||||||||||| | |||||||| ||| || ||| || ||||||| ||||||| | |    
35010388 ctagattcatacacattatgtgtggagaagtgggaaatccggagttcgaaccccgactcctgcacaaattatctctgatagctaccaactgagctaaact 35010487  T
141 tccgggact 149  Q
    | |||||||    
35010488 tacgggact 35010496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 138
Target Start/End: Original strand, 28091334 - 28091431
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca 138  Q
    |||||||| ||||||||||||||||||||||||||||| | | ||||||||| |   ||||||| | ||| || ||| || ||||||| |||||||||    
28091334 ctagattcacacacattatgtgtggagaagtggggaatttggagttcgaacctcaatccctgcataaattatcactgatagctaccaactgagctaca 28091431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 25273075 - 25273180
Alignment:
42 tagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacattt 141  Q
    |||||||||||| ||||| | |||||||||||||||||  | ||||||||||   |||||||||||| | ||||| ||| ||| ||| ||||||||| ||    
25273075 tagattcgcacatattatatatggagaagtggggaatc-cgagttcgaaccctaacccctgcacataatatccctagtagctatcaactgagctacactt 25273173  T
142 ccgggac 148  Q
     ||||||    
25273174 acgggac 25273180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 10601965 - 10601906
Alignment:
45 attcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgca 104  Q
    |||| |||| ||||||||| |||||||||||||||| |||||| ||||||| ||| ||||    
10601965 attcacacatattatgtgtagagaagtggggaatctggggttcaaaccccgacccttgca 10601906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 40981802 - 40981888
Alignment:
52 cacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca 138  Q
    |||||||||||||||||||||| ||||||  | ||| ||| ||| ||||| || | ||| |||||| || ||||||| |||||||||    
40981802 cacattatgtgtggagaagtggagaatctgagattcaaactccgacccctacataaattatccctgctagctaccaactgagctaca 40981888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 33933724 - 33933773
Alignment:
61 tgtggagaagtggggaatctagggttcgaaccccggcccctgcacatatt 110  Q
    |||||||||||||||  || |||| ||||||||||||||||||| |||||    
33933724 tgtggagaagtggggtgtccaggggtcgaaccccggcccctgcatatatt 33933773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 138
Target Start/End: Original strand, 38415500 - 38415597
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca 138  Q
    |||||||| |||||||||||| || |||| ||| |||| | ||||||||| || | || ||||||| ||| ||| || || ||||||| |||||||||    
38415500 ctagattcacacacattatgtatgaagaaatggagaatttggggttcgaatcctgacctctgcacaaattatccttgatagctaccaactgagctaca 38415597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 42657601 - 42657508
Alignment:
45 attcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca 138  Q
    |||| ||||||||||||||| |||||||| |||| | |||||||||| ||| |||||  | | ||| || ||| || ||||||| |||||||||    
42657601 attcacacacattatgtgtgaagaagtggagaatgtggggttcgaactccgacccctatataaattatctctgatagctaccaactgagctaca 42657508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 44294295 - 44294384
Alignment:
60 gtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatttccgggact 149  Q
    ||||||||||||||  |||| ||||||||||| |||||||||||  ||||| |||| |||| ||  ||| |||| |||| || |||||||    
44294295 gtgtggagaagtggaaaatccagggttcgaactccggcccctgccaatattgtcccaggtagctctcaactgaggtacacttgcgggact 44294384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 13210198 - 13210226
Alignment:
82 gggttcgaaccccggcccctgcacatatt 110  Q
    |||||||||||||||||||||||||||||    
13210198 gggttcgaaccccggcccctgcacatatt 13210226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 202 - 470
Target Start/End: Original strand, 90709 - 90977
Alignment:
202 caattatgaaccttttttgggcatgaaagatagctctctccccacccaccatcctctctttgtgtcgagagaagaaatttaacagctttacgaatcgcaa 301  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||| || | ||||||| | | ||||||||||||||||||||||||||| |||     
90709 caattatgaacctttttagggcatgaaagatagctctctccccaaccaccgtcgtttctttgtattgtgagaagaaatttaacagctttacgaatagcat 90808  T
302 cagaattggtataagtgtttccagcagctgctaaaccaccaagagcaaaataagtaccataaataaagcaaattccccaacttccataccatgaaccatc 401  Q
    || |||| |||||| | || |||||||||||||||||||||||||| ||  ||| ||||||| | || ||||||||||||||||||||||||||||||||    
90809 cacaattagtataattcttgccagcagctgctaaaccaccaagagcgaaccaagaaccataagtgaaacaaattccccaacttccataccatgaaccatc 90908  T
402 atctttttgtatatcttcaatgaatctaactgcattgcgaatgaaattctctatctctttcttcctatg 470  Q
    |  ||||||| ||||||||| ||||| ||||||||||  ||| || || |||||||| |||||||||||    
90909 agttttttgtgtatcttcaaggaatcgaactgcattggcaatcaagttatctatctcgttcttcctatg 90977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 7e-50; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 210 - 454
Target Start/End: Original strand, 5719500 - 5719744
Alignment:
210 aaccttttttgggcatgaaagatagctctctccccacccaccatcctctctttgtgtcgagagaagaaatttaacagctttacgaatcgcaacagaattg 309  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| | |  || ||||||||||||||||| ||||| |||||| ||||     
5719500 aaccttttttgagcatgaaagatggctctctccccacccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcaacacaattc 5719599  T
310 gtataagtgtttccagcagctgctaaaccaccaagagcaaaataagtaccataaataaagcaaattccccaacttccataccatgaaccatcatcttttt 409  Q
      |||||| || || ||  |||||| |||||||||||||||  ||| ||||||| | ||||||||||||||| ||||||||||||||||||||  | |||    
5719600 tcataagtcttgcccgcgactgctagaccaccaagagcaaaccaagaaccataagtgaagcaaattccccaatttccataccatgaaccatcacttgttt 5719699  T
410 gtatatcttcaatgaatctaactgcattgcgaatgaaattctcta 454  Q
    || ||||||||| ||||  |||||| ||   ||||||||||||||    
5719700 gtttatcttcaaggaattgaactgcttttgcaatgaaattctcta 5719744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 210 - 454
Target Start/End: Original strand, 5687384 - 5687628
Alignment:
210 aaccttttttgggcatgaaagatagctctctccccacccaccatcctctctttgtgtcgagagaagaaatttaacagctttacgaatcgcaacagaattg 309  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| | |  || ||||||||||||||||| ||||| ||| || ||||     
5687384 aaccttttttgagcatgaaagatggctctctccccacccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcagcacaattc 5687483  T
310 gtataagtgtttccagcagctgctaaaccaccaagagcaaaataagtaccataaataaagcaaattccccaacttccataccatgaaccatcatcttttt 409  Q
      |||||| || || || |||| || ||| |||||||||||  ||| ||||||| | ||||||||||||||| ||||||||||||||||||||  | |||    
5687484 tcataagtcttgccggcggctgttagaccgccaagagcaaaccaagaaccataagtgaagcaaattccccaatttccataccatgaaccatcacttgttt 5687583  T
410 gtatatcttcaatgaatctaactgcattgcgaatgaaattctcta 454  Q
    || ||||||||| |||| ||||||| ||   ||||||||||||||    
5687584 gtttatcttcaaggaatttaactgcttttgcaatgaaattctcta 5687628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 210 - 454
Target Start/End: Original strand, 5666314 - 5666558
Alignment:
210 aaccttttttgggcatgaaagatagctctctccccacccaccatcctctctttgtgtcgagagaagaaatttaacagctttacgaatcgcaacagaattg 309  Q
    ||||||||||| || |||||||| |||||||||||| |||||||||||||||||| | |  || ||||||||||||||||| ||||| ||| || ||||     
5666314 aaccttttttgagcttgaaagatggctctctccccatccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcagcacaattc 5666413  T
310 gtataagtgtttccagcagctgctaaaccaccaagagcaaaataagtaccataaataaagcaaattccccaacttccataccatgaaccatcatcttttt 409  Q
      |||||| || || || |||| || ||| |||||||||||  ||| ||||||| | ||||||||||||||| ||||||||||||||||||||  | |||    
5666414 tcataagtcttaccggcggctgttagaccgccaagagcaaaccaagaaccataagtgaagcaaattccccaatttccataccatgaaccatcacttgttt 5666513  T
410 gtatatcttcaatgaatctaactgcattgcgaatgaaattctcta 454  Q
    || ||||||||| |||| ||||||| ||   ||||||||||||||    
5666514 gtttatcttcaaggaatttaactgcttttgcaatgaaattctcta 5666558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 28300190 - 28300093
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca 138  Q
    |||||||| |||||||||||| |||||||||||||||||  ||||||||||||||||||||||||| ||| ||  ||||| ||||||| |||||||||    
28300190 ctagattcacacacattatgtatggagaagtggggaatccggggttcgaaccccggcccctgcacaaattatcattggtagctaccaactgagctaca 28300093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 41 - 147
Target Start/End: Complemental strand, 12959810 - 12959704
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatt 140  Q
    |||||||| |||||||||| || | | ||||||||||||| |||||||||||||  ||||||||||  || |||||| || ||||||| ||||||||| |    
12959810 ctagattcacacacattatatgcgaataagtggggaatctggggttcgaaccccaacccctgcacaagttatccctgatagctaccaactgagctacact 12959711  T
141 tccggga 147  Q
    | |||||    
12959710 tacggga 12959704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 15837239 - 15837177
Alignment:
44 gattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcaca 106  Q
    ||||| ||||||||||||||||| || ||||||||| || |||||||||||| ||||||||||    
15837239 gattcacacacattatgtgtggaaaaatggggaatccagagttcgaaccccgacccctgcaca 15837177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 461
Target Start/End: Original strand, 5652914 - 5653018
Alignment:
357 accataaataaagcaaattccccaacttccataccatgaaccatcatctttttgtatatcttcaatgaatctaactgcattgcgaatgaaattctctatc 456  Q
    ||||||||| ||||||||||||||| | |||||||||||||||||   | |||||  |  ||||||||||| ||| |||||   ||||||||| ||||||    
5652914 accataaatgaagcaaattccccaattcccataccatgaaccatcgattgtttgtgaagattcaatgaatcgaaccgcatttgcaatgaaattatctatc 5653013  T
457 tcttt 461  Q
    |||||    
5653014 tcttt 5653018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 1028820 - 1028723
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca 138  Q
    |||||||| |||||||||||| || |||||||  |||||  | ||||||||| | ||||||||||||| | |||  ||||  ||||||||||||||||    
1028820 ctagattcacacacattatgtatgaagaagtgaagaatccggagttcgaacctcagcccctgcacataatgtcctcggtagttaccaattgagctaca 1028723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 76
Target Start/End: Original strand, 19756433 - 19756468
Alignment:
41 ctagattcgcacacattatgtgtggagaagtgggga 76  Q
    |||||||| |||||||||||||||||||||||||||    
19756433 ctagattcacacacattatgtgtggagaagtgggga 19756468  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 38107459 - 38107502
Alignment:
61 tgtggagaagtggggaatctagggttcgaaccccggcccctgca 104  Q
    |||||||||||||||  ||| |||||||||||||||||||||||    
38107459 tgtggagaagtggggtgtctggggttcgaaccccggcccctgca 38107502  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 38283209 - 38283166
Alignment:
61 tgtggagaagtggggaatctagggttcgaaccccggcccctgca 104  Q
    |||||||||||||||  ||| |||||||||||||||||||||||    
38283209 tgtggagaagtggggtgtctggggttcgaaccccggcccctgca 38283166  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 2908079 - 2908125
Alignment:
64 ggagaagtggggaatctagggttcgaaccccggcccctgcacatatt 110  Q
    ||||||||||||  || |||||||||||||||||||||||| |||||    
2908079 ggagaagtggggtgtccagggttcgaaccccggcccctgcatatatt 2908125  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 9587655 - 9587602
Alignment:
55 attatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacata 108  Q
    ||||||||| ||||| || ||||| |||||||||||||||| ||| ||||||||    
9587655 attatgtgtagagaaatgaggaatttagggttcgaaccccgacccttgcacata 9587602  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 21133092 - 21133051
Alignment:
61 tgtggagaagtggggaatctagggttcgaaccccggcccctg 102  Q
    |||||||||||||||  ||| |||||||||||||||||||||    
21133092 tgtggagaagtggggtgtctggggttcgaaccccggcccctg 21133051  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 13906660 - 13906688
Alignment:
82 gggttcgaaccccggcccctgcacatatt 110  Q
    |||||||||||||||||||||||||||||    
13906660 gggttcgaaccccggcccctgcacatatt 13906688  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 36103956 - 36103984
Alignment:
82 gggttcgaaccccggcccctgcacatatt 110  Q
    |||||||||||||||||||||||||||||    
36103956 gggttcgaaccccggcccctgcacatatt 36103984  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 41454861 - 41454889
Alignment:
82 gggttcgaaccccggcccctgcacatatt 110  Q
    |||||||||||||||||||||||||||||    
41454861 gggttcgaaccccggcccctgcacatatt 41454889  T

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Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 210 - 470
Target Start/End: Original strand, 12135840 - 12136100
Alignment:
210 aaccttttttgggcatgaaagatagctctctccccacccaccatcctctctttgtgtcgagagaagaaatttaacagctttacgaatcgcaacagaattg 309  Q
    |||||| || |||| ||| |||||||| || |||||||| ||||  |||| ||| || | ||||||||||||||| ||||| ||||| ||| || |||||    
12135840 aaccttattagggcttgacagatagctttccccccacccgccattttctccttgcgttgtgagaagaaatttaactgctttgcgaatagcagcacaattg 12135939  T
310 gtataagtgtttccagcagctgctaaaccaccaagagcaaaataagtaccataaataaagcaaattccccaacttccataccatgaaccatcatcttttt 409  Q
    |||||||| |||||||||||||||||||||||||| || ||  ||| ||||||||| |||||||| ||||||  |||||||||||||||||||  | |||    
12135940 gtataagtctttccagcagctgctaaaccaccaagtgccaaccaagaaccataaatgaagcaaataccccaagctccataccatgaaccatcagatgttt 12136039  T
410 gtatatcttcaatgaatctaactgcattgcgaatgaaattctctatctctttcttcctatg 470  Q
    || ||||||| | | ||  ||||||||||  ||| ||||  ||||||||||||||||||||    
12136040 gtttatcttctaggtattgaactgcattggcaataaaatcgtctatctctttcttcctatg 12136100  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 38745298 - 38745406
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatt 140  Q
    |||||||| |||||||| ||||||||||||||||||||   ||||||||| |||| |||||||||| ||| ||||||||||| ||||| | |||||||||    
38745298 ctagattcacacacattttgtgtggagaagtggggaattcggggttcgaatcccgacccctgcacaaattatccctggtaaccaccaactaagctacatt 38745397  T
141 tccgggact 149  Q
    | |||||||    
38745398 tacgggact 38745406  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 17002996 - 17002906
Alignment:
44 gattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctac 137  Q
    ||||| ||||||||||||||||||||||||||||||    ||||||||||| ||||||| ||| ||| ||||||||| ||||||| ||||||||    
17002996 gattcacacacattatgtgtggagaagtggggaatc---cgttcgaaccccagcccctgtacaaattatccctggtagctaccaactgagctac 17002906  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 141
Target Start/End: Complemental strand, 54240706 - 54240607
Alignment:
42 tagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacattt 141  Q
    ||||||| ||||||||||| ||||||||||||  ||||   ||||||||||||| |||||||||||||| ||| ||||| || |||| ||||||||||||    
54240706 tagattcacacacattatgcgtggagaagtggaaaatccgaggttcgaaccccgacccctgcacatattgtccttggtagctgccaactgagctacattt 54240607  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 148
Target Start/End: Complemental strand, 3313577 - 3313489
Alignment:
60 gtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatttccgggac 148  Q
    |||||||||||||||||||||||| ||||||| ||||| |||||| ||||| ||| ||||| ||||||| ||||| ||| || ||||||    
3313577 gtgtggagaagtggggaatctaggattcgaactccggctcctgcaaatattgtccttggtagctaccaactgagccacacttacgggac 3313489  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 41259958 - 41260034
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctg 117  Q
    |||||||| |||||||||||||||||||||||||||||   ||| |||||||||||||||| |||| ||| ||||||    
41259958 ctagattcacacacattatgtgtggagaagtggggaattcgggggtcgaaccccggcccctacacaaattatccctg 41260034  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 138
Target Start/End: Original strand, 51829562 - 51829658
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca 138  Q
    |||||||| || |||||||||||||||||||| ||||||| |||||||||| || || |||||||| ||  | ||||||| ||||||| |||||||||    
51829562 ctagattcacatacattatgtgtggagaagtgaggaatctggggttcgaacaccagctcctgcacaaatgat-cctggtagctaccaactgagctaca 51829658  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 52910392 - 52910443
Alignment:
40 actagattcgcacacattatgtgtggagaagtggggaatctagggttcgaac 91  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||| ||||    
52910392 actagattcacacacattatgtgtggagaagtggggaatttagggtttgaac 52910443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 44 - 138
Target Start/End: Complemental strand, 55009622 - 55009528
Alignment:
44 gattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca 138  Q
    ||||| |||||||||||| |||||||||| | ||||  ||||||||||||||| | || |||| ||| |||||  || |||||||||||||||||    
55009622 gattcacacacattatgtatggagaagtgagaaatccggggttcgaaccccggtctctacacaaattatccctaatagctaccaattgagctaca 55009528  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 141
Target Start/End: Complemental strand, 6757340 - 6757240
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatt 140  Q
    |||||||  ||||||||||||||||| ||||| | |||||||||||| |||| |  || ||||||| ||| ||| || || |||||| ||||||||||||    
6757340 ctagatttacacacattatgtgtggaaaagtgagaaatctagggttcaaacctcaaccactgcacaaattatccttgatagctaccagttgagctacatt 6757241  T
141 t 141  Q
    |    
6757240 t 6757240  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 76
Target Start/End: Original strand, 11988936 - 11988971
Alignment:
41 ctagattcgcacacattatgtgtggagaagtgggga 76  Q
    |||||||| |||||||||||||||||||||||||||    
11988936 ctagattcacacacattatgtgtggagaagtgggga 11988971  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 106
Target Start/End: Original strand, 27100927 - 27100982
Alignment:
51 acacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcaca 106  Q
    |||||||||||||||| ||||||| ||||| | ||||||||||||  |||||||||    
27100927 acacattatgtgtggaaaagtgggaaatctggagttcgaaccccgatccctgcaca 27100982  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 21177039 - 21177077
Alignment:
40 actagattcgcacacattatgtgtggagaagtggggaat 78  Q
    ||||||||  |||||||||||||||||||||||||||||    
21177039 actagatttacacacattatgtgtggagaagtggggaat 21177077  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 9737623 - 9737688
Alignment:
83 ggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatttccgggac 148  Q
    ||||||||||| | |||||||||||| | || |||||| ||||||| |||||||||| | ||||||    
9737623 ggttcgaaccctgacccctgcacataatatctctggtagctaccaactgagctacatctacgggac 9737688  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 45118718 - 45118677
Alignment:
68 aagtggggaatctagggttcgaaccccggcccctgcacatat 109  Q
    ||||||||||||  ||||||||||||||||||||||| ||||    
45118718 aagtggggaatcccgggttcgaaccccggcccctgcatatat 45118677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 95
Target Start/End: Original strand, 16231879 - 16231911
Alignment:
63 tggagaagtggggaatctagggttcgaaccccg 95  Q
    ||||||||||||| |||||||||||||||||||    
16231879 tggagaagtggggtatctagggttcgaaccccg 16231911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Complemental strand, 29226387 - 29226359
Alignment:
82 gggttcgaaccccggcccctgcacatatt 110  Q
    |||||||||||||||||||||||||||||    
29226387 gggttcgaaccccggcccctgcacatatt 29226359  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 29645861 - 29645889
Alignment:
82 gggttcgaaccccggcccctgcacatatt 110  Q
    |||||||||||||||||||||||||||||    
29645861 gggttcgaaccccggcccctgcacatatt 29645889  T

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Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 8757280 - 8757376
Alignment:
42 tagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca 138  Q
    ||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| | || |||||| ||||||| | |||||||    
8757280 tagattcacacacattatgtgtggagacgtggggaatccagggttcgaaccccggcccctgcacataatgtctctggtagctaccaactaagctaca 8757376  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 148
Target Start/End: Complemental strand, 7550096 - 7550008
Alignment:
60 gtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatttccgggac 148  Q
    ||||||||||||||||||||  ||||||||||||||||||||||| ||| | || |||||| ||| ||| ||||||||| || ||||||    
7550096 gtgtggagaagtggggaatccggggttcgaaccccggcccctgcaaataatgtctctggtagctatcaactgagctacacttacgggac 7550008  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 23991249 - 23991292
Alignment:
61 tgtggagaagtggggaatctagggttcgaaccccggcccctgca 104  Q
    |||||||||||||||  || ||||||||||||||||||||||||    
23991249 tgtggagaagtggggtgtccagggttcgaaccccggcccctgca 23991292  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 43109272 - 43109302
Alignment:
82 gggttcgaaccccggcccctgcacatatttt 112  Q
    |||||||||||||||||||||||||||||||    
43109272 gggttcgaaccccggcccctgcacatatttt 43109302  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 2098848 - 2098752
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca 138  Q
    |||||||| |||||||||| ||||||||||||| |||||  ||||||| |  || |||||| |||||| | ||| | ||| ||||||| |||||||||    
2098848 ctagattcacacacattatatgtggagaagtggagaatccggggttcggattcc-gcccctacacataatatccattgtagctaccaactgagctaca 2098752  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 24134658 - 24134686
Alignment:
82 gggttcgaaccccggcccctgcacatatt 110  Q
    |||||||||||||||||||||||||||||    
24134658 gggttcgaaccccggcccctgcacatatt 24134686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 33207295 - 33207247
Alignment:
56 ttatgtgtggagaagtggggaatctagggttcgaaccccggcccctgca 104  Q
    |||| |||||||||||||||  ||  |||||||||||||||||||||||    
33207295 ttatttgtggagaagtggggtgtccggggttcgaaccccggcccctgca 33207247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 34702347 - 34702375
Alignment:
82 gggttcgaaccccggcccctgcacatatt 110  Q
    |||||||||||||||||||||||||||||    
34702347 gggttcgaaccccggcccctgcacatatt 34702375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 7326340 - 7326423
Alignment:
45 attcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaa 128  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||| || ||| ||||||||| |||||||    
7326340 attcacacacattatgtgtggagaagtggggaatctagggttcgaaacccgacccctgctcaaattatccctggtagctaccaa 7326423  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 6922639 - 6922747
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatt 140  Q
    |||||||| |||||||||| |||||||||||||||||||| | ||| |||||||| |||||||||| ||| | | ||||| ||||||| ||| ||||| |    
6922639 ctagattcacacacattatatgtggagaagtggggaatctggagtttgaaccccgacccctgcacaaattattcatggtagctaccaactgaactacact 6922738  T
141 tccgggact 149  Q
    | |||||||    
6922739 tacgggact 6922747  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 56 - 148
Target Start/End: Original strand, 20599412 - 20599504
Alignment:
56 ttatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatttccgggac 148  Q
    ||||||||||||||||||||||||  |||||| ||||||| ||| |||||||| | ||||||||| ||||||| ||||||||| || ||||||    
20599412 ttatgtgtggagaagtggggaatccggggttcaaaccccgacccttgcacataatatccctggtagctaccaactgagctacacttacgggac 20599504  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 43 - 138
Target Start/End: Original strand, 21023693 - 21023788
Alignment:
43 agattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca 138  Q
    |||||| |||||||||||||||||||||||| |||||  ||||||||| | | |  ||| |||| ||| ||||||||| |||||||||||||||||    
21023693 agattcacacacattatgtgtggagaagtggagaatccggggttcgaatctcagttcctacacaaattatccctggtagctaccaattgagctaca 21023788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 5925684 - 5925619
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcaca 106  Q
    |||||||| ||||||||||||||| |||||||||||||| ||| || ||||||| |||||||||||    
5925684 ctagattcacacacattatgtgtgaagaagtggggaatccaggatttgaaccccagcccctgcaca 5925619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 12606753 - 12606656
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca 138  Q
    |||||||| |||||||||| |||| ||||||||||||||| ||||||||||| ||   ||| |||| ||| ||||| ||| ||||||| |||||||||    
12606753 ctagattcacacacattatatgtgaagaagtggggaatctggggttcgaacctcgattcctacacaaattatccctagtagctaccaactgagctaca 12606656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 492987 - 492944
Alignment:
61 tgtggagaagtggggaatctagggttcgaaccccggcccctgca 104  Q
    |||||||||||||||  || ||||||||||||||||||||||||    
492987 tgtggagaagtggggtgtccagggttcgaaccccggcccctgca 492944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 29045867 - 29045785
Alignment:
42 tagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaacta 124  Q
    ||||||| |||||||||||| |||||||||||||||||  || ||||| | || ||| ||||||| | | ||||| |||||||    
29045867 tagattcacacacattatgtatggagaagtggggaatccgggattcgagctccagcctctgcacacaatgtccctagtaacta 29045785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 6228294 - 6228322
Alignment:
82 gggttcgaaccccggcccctgcacatatt 110  Q
    |||||||||||||||||||||||||||||    
6228294 gggttcgaaccccggcccctgcacatatt 6228322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 15717047 - 15717075
Alignment:
82 gggttcgaaccccggcccctgcacatatt 110  Q
    |||||||||||||||||||||||||||||    
15717047 gggttcgaaccccggcccctgcacatatt 15717075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 18903401 - 18903429
Alignment:
82 gggttcgaaccccggcccctgcacatatt 110  Q
    |||||||||||||||||||||||||||||    
18903401 gggttcgaaccccggcccctgcacatatt 18903429  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 41 - 148
Target Start/End: Original strand, 34319820 - 34319927
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatt 140  Q
    |||||||| |||||||||||||| |||||||| |||||| |||||| ||| || |||||||||||| ||| |||||| || ||||||| |||| |||| |    
34319820 ctagattcacacacattatgtgtagagaagtgaggaatccagggttagaatcctggcccctgcacaaattatccctgatagctaccaactgaggtacact 34319919  T
141 tccgggac 148  Q
    | ||||||    
34319920 tacgggac 34319927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 21297471 - 21297412
Alignment:
61 tgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggta 120  Q
    |||||||||||||||||||   |||||||||||||||||||||||| |||||||||||||    
21297471 tgtggagaagtggggaatccgaggttcgaaccccggcccctgcacaaattttccctggta 21297412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 9198943 - 9199042
Alignment:
50 cacacattatgtgtggagaagtggggaatctagggttcgaaccccggccc-ctgcacatattttccctggtaactaccaattgagctacatttccgggac 148  Q
    ||||||||||||||||||||||||| |||    |||||||||||| |||| ||||||| ||| || |||||| ||||||| ||||||||| || ||||||    
9198943 cacacattatgtgtggagaagtgggaaattcgaggttcgaaccccagcccgctgcacaaattatctctggtagctaccaactgagctacacttacgggac 9199042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 9932020 - 9932105
Alignment:
42 tagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactacca 127  Q
    ||||||| |||||||||| |||||||||||||||||||  |||||||||  |||||| ||| ||| ||| ||||| ||| ||||||    
9932020 tagattcacacacattatatgtggagaagtggggaatccggggttcgaattccggccactgtacaaattatcccttgtagctacca 9932105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 14368421 - 14368474
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaacccc 94  Q
    |||||||| ||||||||||||||||||||||||||||||   ||||||||||||    
14368421 ctagattcacacacattatgtgtggagaagtggggaatccgtggttcgaacccc 14368474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 37123659 - 37123562
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca 138  Q
    |||||||| ||||||||||||||||||||||| | ||| | ||||||||| ||||  |||| |||| ||| |||||| ||||||| || ||| |||||    
37123659 ctagattcacacacattatgtgtggagaagtgagaaatttggggttcgaatcccgaaccctacacaaattatccctgataactactaactgaactaca 37123562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 44287894 - 44287856
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatc 79  Q
    |||||||| ||||||||||||||||||||||||||||||    
44287894 ctagattcacacacattatgtgtggagaagtggggaatc 44287856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 31068899 - 31068995
Alignment:
42 tagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca 138  Q
    ||||||| ||||||||| ||||||||||||||||||||  | |||| ||| ||| ||||| |||| ||| ||  || || ||||||| |||||||||    
31068899 tagattcacacacattaagtgtggagaagtggggaatccggagttcaaactccgacccctacacaaattatcaatgttagctaccaactgagctaca 31068995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 8915667 - 8915614
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaacccc 94  Q
    |||||||| |||||||||| | |||||||||||||||||  |||| ||||||||    
8915667 ctagattcacacacattatttatggagaagtggggaatccggggtacgaacccc 8915614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 23948710 - 23948762
Alignment:
44 gattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggccc 99  Q
    ||||| |||||||||||||||   ||||||||||||  ||||||||||||||||||    
23948710 gattcacacacattatgtgtg---aagtggggaatccggggttcgaaccccggccc 23948762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 28646898 - 28646946
Alignment:
61 tgtggagaagtggggaatctagggttcgaaccccggcccctgcacatat 109  Q
    ||||||||||| |||  ||| ||||||||||||||||||||||| ||||    
28646898 tgtggagaagtagggggtctggggttcgaaccccggcccctgcatatat 28646946  T

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Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 30327758 - 30327661
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca 138  Q
    |||||||| |||| ||||||||||||||||||| ||||   ||||||||||||||||||||||| | ||| || ||| || ||||||| |||||||||    
30327758 ctagattcacacatattatgtgtggagaagtggcgaattcggggttcgaaccccggcccctgcataaattatctctgatagctaccaactgagctaca 30327661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 138
Target Start/End: Original strand, 43406018 - 43406106
Alignment:
50 cacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca 138  Q
    |||||||||||||||||||||||| ||||||  ||||||||| |||| || |||||| ||| || |||||| ||||||| |||||||||    
43406018 cacacattatgtgtggagaagtggagaatctgaggttcgaactccggtccttgcacaaattatctctggtagctaccaactgagctaca 43406106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 60 - 138
Target Start/End: Original strand, 28580436 - 28580514
Alignment:
60 gtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca 138  Q
    ||||||||||||||||||||| |||||||||||| ||| |||||| | ||| || |||||| ||| ||| |||||||||    
28580436 gtgtggagaagtggggaatctggggttcgaaccctggctcctgcaaacattgtctctggtagctatcaactgagctaca 28580514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 40 - 138
Target Start/End: Original strand, 31478692 - 31478790
Alignment:
40 actagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca 138  Q
    ||||||||| |||||||||||||| ||||||||| |||||    |||||||| ||||||| |||||| ||| || | |||  |||||||||||||||||    
31478692 actagattcacacacattatgtgtagagaagtggagaatccgaagttcgaactccggcccttgcacaaattatctccggtggctaccaattgagctaca 31478790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 32398320 - 32398235
Alignment:
40 actagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactac 125  Q
    ||||||||| || ||||||||||||||||||||||||||     |||||||||||| | |||||||||| | |||||| |||||||    
32398320 actagattcacatacattatgtgtggagaagtggggaatacgttgttcgaaccccgactcctgcacataatatccctgataactac 32398235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 148
Target Start/End: Complemental strand, 11361414 - 11361322
Alignment:
56 ttatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatttccgggac 148  Q
    |||||||||||||||||||||||| |  | |||||| |  ||||||||||| ||| ||| ||||||||||||| |||||| || || ||||||    
11361414 ttatgtgtggagaagtggggaatccaatgatcgaactctagcccctgcacaaattatccttggtaactaccaactgagctccacttacgggac 11361322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 39969013 - 39968933
Alignment:
45 attcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactac 125  Q
    |||||||||||||||||||||||||||||| |||| || |||| |||| | || ||| |||||| | ||||||||| ||||    
39969013 attcgcacacattatgtgtggagaagtgggaaatccagagttcaaacctcagctcctacacataatgtccctggtagctac 39968933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 141
Target Start/End: Complemental strand, 20706607 - 20706508
Alignment:
42 tagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacattt 141  Q
    ||||||| ||||||||| ||||||||||||||  |||||| ||||| ||||  | || ||||||| ||| ||  ||||| ||||||| ||||||||||||    
20706607 tagattcacacacattacgtgtggagaagtggaaaatctaaggttcaaaccttgacctctgcacaaattatcgttggtagctaccaactgagctacattt 20706508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 24793577 - 24793490
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaa 128  Q
    |||||||| || ||||||||||| ||||| |||| ||||| ||||||| |||||| |||||||||| ||| || ||| || |||||||    
24793577 ctagattcacatacattatgtgtagagaaatgggaaatctggggttcggaccccgacccctgcacaaattatctctgatagctaccaa 24793490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 138
Target Start/End: Original strand, 36730206 - 36730283
Alignment:
60 gtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctaca 138  Q
    ||||||||||||||||||||  |||||| ||  | |||||||||| ||||| ||||||||| ||||||| |||||||||    
36730206 gtgtggagaagtggggaatccggggttc-aaatctggcccctgcaaatattgtccctggtagctaccaactgagctaca 36730283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 7171813 - 7171770
Alignment:
61 tgtggagaagtggggaatctagggttcgaaccccggcccctgca 104  Q
    |||||||||||||||  ||| |||||||||||||||||||||||    
7171813 tgtggagaagtggggtgtctggggttcgaaccccggcccctgca 7171770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 8032958 - 8032887
Alignment:
45 attcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccct 116  Q
    |||| ||||||||||||||||||| |||| |||| | ||||||||| |||  |||||||||| ||| |||||    
8032958 attcacacacattatgtgtggagatgtggagaatttggggttcgaatcccaacccctgcacaaattgtccct 8032887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 24133041 - 24132998
Alignment:
61 tgtggagaagtggggaatctagggttcgaaccccggcccctgca 104  Q
    ||||||||||||||| ||| | ||||||||||||||||||||||    
24133041 tgtggagaagtggggtatccaaggttcgaaccccggcccctgca 24132998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 15409251 - 15409197
Alignment:
45 attcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggccc 99  Q
    |||| ||||||||||||||  ||||||||||||||| || ||| |||||||||||    
15409251 attcacacacattatgtgtaaagaagtggggaatctgggattcaaaccccggccc 15409197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 12375446 - 12375474
Alignment:
82 gggttcgaaccccggcccctgcacatatt 110  Q
    |||||||||||||||||||||||||||||    
12375446 gggttcgaaccccggcccctgcacatatt 12375474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Complemental strand, 31250208 - 31250180
Alignment:
82 gggttcgaaccccggcccctgcacatatt 110  Q
    |||||||||||||||||||||||||||||    
31250208 gggttcgaaccccggcccctgcacatatt 31250180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Original strand, 38503291 - 38503319
Alignment:
82 gggttcgaaccccggcccctgcacatatt 110  Q
    |||||||||||||||||||||||||||||    
38503291 gggttcgaaccccggcccctgcacatatt 38503319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Complemental strand, 43227927 - 43227899
Alignment:
82 gggttcgaaccccggcccctgcacatatt 110  Q
    |||||||||||||||||||||||||||||    
43227927 gggttcgaaccccggcccctgcacatatt 43227899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 35960 - 35873
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaa 128  Q
    |||||||| || ||||||||||| ||||| |||| ||||| ||||||| |||||| |||||||||| ||| || ||| || |||||||    
35960 ctagattcacatacattatgtgtagagaaatgggaaatctggggttcggaccccgacccctgcacaaattatctctgatagctaccaa 35873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 9708 - 9746
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatc 79  Q
    |||||||| ||||||||||||||||||||||||||||||    
9708 ctagattcacacacattatgtgtggagaagtggggaatc 9746  T

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Target: scaffold0040 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 148
Target Start/End: Original strand, 58650 - 58755
Alignment:
41 ctagattcgcacacattatgtgtggagaagtggggaatctagggttcgaaccccggcccctgcacatattttccctggtaactaccaattgagctacatt 140  Q
    ||||| || |||| || ||||||||||||||||| ||||  ||||||||||  ||||||  |||||  |||||  || || ||||||| |||||||||||    
58650 ctagaatcacacatataatgtgtggagaagtgggaaatccggggttcgaacttcggccc--gcacaatttttctttgatagctaccaactgagctacatt 58747  T
141 tccgggac 148  Q
    | ||||||    
58748 tacgggac 58755  T

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Target: scaffold0035 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 23807 - 23756
Alignment:
40 actagattcgcacacattatgtgtggagaagtggggaatctagggttcgaacc 92  Q
    ||||||||| ||| ||||||||||| |||||||||||||| | ||||||||||    
23807 actagattcacacgcattatgtgtgaagaagtggggaatcca-ggttcgaacc 23756  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 110
Target Start/End: Complemental strand, 419773 - 419745
Alignment:
82 gggttcgaaccccggcccctgcacatatt 110  Q
    |||||||||||||||||||||||||||||    
419773 gggttcgaaccccggcccctgcacatatt 419745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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