View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0253_low_8 (Length: 460)
Name: NF0253_low_8
Description: NF0253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0253_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 4e-79; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 5 - 162
Target Start/End: Original strand, 32531670 - 32531827
Alignment:
| Q |
5 |
gagcagcacagatcaccaaccactctagtatcaaaggctcaaataccatctcatggaccataaatgattttatacctctaactaagatgttgatgataat |
104 |
Q |
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| T |
32531670 |
gagcaacacagatcaccaaccactctagtatcaaaggctcaaataccatctcatggaccataaatgattttatacctctaactaagatgttgatgataat |
32531769 |
T |
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| Q |
105 |
gatagaggtaatgagctaggtcacgtgaattttaaatttttgacgaaattgttaccaa |
162 |
Q |
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| T |
32531770 |
gatagaggtaatgagctaggtcacgtgaattttaaatttttgacgaacttgttaccaa |
32531827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 316 - 431
Target Start/End: Original strand, 32532004 - 32532119
Alignment:
| Q |
316 |
tactgtattatgttcattgaagaaggaagacctttaaccatgcacaattccacatattacatgtaatcttccattaatatttaaggcggtaagatcgaca |
415 |
Q |
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| T |
32532004 |
tactgtattatgttcattgaagaaggaagacctttaaccatgcacaattccacatattacatgtaatcttccattaatatttaaggcggtaagatcgaca |
32532103 |
T |
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| Q |
416 |
ggaaaaatacaaagag |
431 |
Q |
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| T |
32532104 |
ggaaaaatacaaagag |
32532119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 158 - 260
Target Start/End: Original strand, 32531903 - 32532005
Alignment:
| Q |
158 |
accaattcatactatgacatgtgttttagtcatatgacaataaaatgacaaataaattctgtaacgtttagcagaaattgaatgaaggatccactgtgtt |
257 |
Q |
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| T |
32531903 |
accaattcatactatgacatgtgttttagtcatatgacaataaaatgacaaataaattctgtaacgtttagcagaaattgaatgaaggatccactgtgtt |
32532002 |
T |
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| Q |
258 |
gta |
260 |
Q |
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||| |
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| T |
32532003 |
gta |
32532005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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