View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0253_low_9 (Length: 441)

Name: NF0253_low_9
Description: NF0253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0253_low_9
NF0253_low_9
[»] chr6 (8 HSPs)
chr6 (81-307)||(15517851-15518073)
chr6 (205-381)||(19697856-19698033)
chr6 (303-378)||(6591863-6591938)
chr6 (309-377)||(24044948-24045016)
chr6 (309-377)||(24041645-24041713)
chr6 (332-381)||(15518074-15518123)
chr6 (317-372)||(14579662-14579716)
chr6 (274-350)||(3835701-3835777)
[»] chr1 (12 HSPs)
chr1 (166-381)||(12141663-12141874)
chr1 (216-381)||(24981173-24981338)
chr1 (219-366)||(1953632-1953779)
chr1 (211-381)||(47580331-47580503)
chr1 (226-342)||(51465448-51465562)
chr1 (273-371)||(4242590-4242688)
chr1 (311-381)||(9111552-9111622)
chr1 (240-377)||(43254081-43254217)
chr1 (211-377)||(38825492-38825658)
chr1 (250-377)||(39197188-39197315)
chr1 (224-377)||(38828702-38828855)
chr1 (309-377)||(49387621-49387689)
[»] chr8 (9 HSPs)
chr8 (211-381)||(1788910-1789081)
chr8 (205-381)||(38678618-38678790)
chr8 (205-377)||(17028285-17028457)
chr8 (205-377)||(17558721-17558893)
chr8 (224-381)||(39655710-39655869)
chr8 (205-340)||(38676239-38676373)
chr8 (277-381)||(21185332-21185436)
chr8 (143-361)||(21346985-21347198)
chr8 (229-338)||(4326729-4326837)
[»] chr2 (9 HSPs)
chr2 (205-381)||(2590431-2590607)
chr2 (205-381)||(18739122-18739299)
chr2 (205-421)||(21189332-21189541)
chr2 (233-381)||(14433610-14433759)
chr2 (205-381)||(35969288-35969460)
chr2 (243-374)||(1043114-1043244)
chr2 (309-355)||(27083126-27083173)
chr2 (327-377)||(10941440-10941489)
chr2 (327-377)||(10947309-10947358)
[»] chr7 (12 HSPs)
chr7 (211-381)||(11673937-11674107)
chr7 (273-381)||(31206637-31206745)
chr7 (264-379)||(39426464-39426579)
chr7 (273-381)||(31210086-31210194)
chr7 (227-381)||(3850550-3850705)
chr7 (217-381)||(5434872-5435037)
chr7 (138-239)||(22301226-22301323)
chr7 (319-381)||(22301162-22301224)
chr7 (273-377)||(15569565-15569668)
chr7 (239-377)||(32352444-32352581)
chr7 (309-377)||(13815772-13815840)
chr7 (267-349)||(2609644-2609726)
[»] scaffold0014 (1 HSPs)
scaffold0014 (211-381)||(82557-82728)
[»] chr5 (5 HSPs)
chr5 (216-381)||(18594756-18594921)
chr5 (166-378)||(26703031-26703240)
chr5 (166-378)||(26972764-26972973)
chr5 (205-379)||(39292036-39292203)
chr5 (267-355)||(13291946-13292034)
[»] chr4 (9 HSPs)
chr4 (211-381)||(6667730-6667898)
chr4 (222-381)||(13010544-13010702)
chr4 (211-381)||(6671402-6671564)
chr4 (273-381)||(44643451-44643558)
chr4 (295-421)||(895463-895581)
chr4 (238-355)||(31767484-31767601)
chr4 (318-381)||(20058114-20058177)
chr4 (239-352)||(43287813-43287926)
chr4 (205-262)||(20058192-20058249)
[»] chr3 (7 HSPs)
chr3 (222-366)||(11634196-11634340)
chr3 (166-377)||(19930051-19930256)
chr3 (295-377)||(9372227-9372309)
chr3 (274-377)||(2353196-2353298)
chr3 (318-377)||(42253577-42253635)
chr3 (383-421)||(16366407-16366445)
chr3 (295-377)||(26445109-26445191)
[»] scaffold0028 (3 HSPs)
scaffold0028 (273-381)||(110120-110227)
scaffold0028 (273-381)||(127699-127806)
scaffold0028 (380-421)||(110218-110259)
[»] scaffold0076 (1 HSPs)
scaffold0076 (274-381)||(6771-6877)
[»] scaffold0216 (1 HSPs)
scaffold0216 (273-355)||(12112-12194)


Alignment Details
Target: chr6 (Bit Score: 170; Significance: 4e-91; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 81 - 307
Target Start/End: Original strand, 15517851 - 15518073
Alignment:
Q  81 gttgttggtttgtatatatgttgctttgatcagtacgtaataagaagaaaaaatgtgaaaattgaacctgcacatatcatacatttatatactccctcac 180  Q
    |||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  15517851 gttgttggcttgtatatatgttgctttgatcagtatgtaataaaaagaaaaaatgtgaaaattgaacctgcacatagcatacatttatacactccctcac 15517950  T
Q  181 ttcatatttatctatattcacacaaattaatttccctcatccaaaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgtt 280  Q
    |||||||||||||||    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||    
T  15517951 ttcatatttatctat----acacaaattaatttccctcattcaaaatattgagtttctgggttacatctcctcatatctttaagataaagttgagttgtt 15518046  T
Q  281 ctgtcacctccggttatgattcataac 307  Q
    ||||||||||||||||||||| |||||    
T  15518047 ctgtcacctccggttatgatttataac 15518073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 205 - 381
Target Start/End: Complemental strand, 19698033 - 19697856
Alignment:
Q  205 aattaatttccctcatccaaaatattgag-tttctgggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattca 303  Q
    ||||| |||| ||| |||||||||||||| ||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  19698033 aattattttctctcttccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgagttgttctgtcacctccgattatgattca 19697934  T
Q  304 taacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgactatgt 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||    
T  19697933 taacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacaatgactatgt 19697856  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 303 - 378
Target Start/End: Complemental strand, 6591938 - 6591863
Alignment:
Q  303 ataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgacta 378  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  6591938 ataacggagaagaactgttgcatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgacta 6591863  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 377
Target Start/End: Complemental strand, 24045016 - 24044948
Alignment:
Q  309 gggaagaac-tgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgact 377  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| || ||||||| || ||||||||||    
T  24045016 gggaagaacatgttgtatcctgggaggatatgcgcttatgaggcgaat-aaatccttaaggacagtgact 24044948  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 377
Target Start/End: Complemental strand, 24041713 - 24041645
Alignment:
Q  309 gggaagaac-tgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgact 377  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||| || |||| || |||||||||||||    
T  24041713 gggaagaacatgttgtatcctaggaggatatgcgcttatgaggcgaat-aaattcttaaagacagtgact 24041645  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 15518074 - 15518123
Alignment:
Q  332 aggatatgcgcttatgaggcggatgaaatcctcaaagacagtgactatgt 381  Q
    ||||||||||||||||||||||||  ||||||||| || |||||||||||    
T  15518074 aggatatgcgcttatgaggcggatataatcctcaaggaaagtgactatgt 15518123  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 372
Target Start/End: Original strand, 14579662 - 14579716
Alignment:
Q  317 ctgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacag 372  Q
    ||||||||||||| |||||||| |||||||||||||||| ||||||| || |||||    
T  14579662 ctgttgtatcctgagaggatattcgcttatgaggcggat-aaatccttaaggacag 14579716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 350
Target Start/End: Complemental strand, 3835777 - 3835701
Alignment:
Q  274 agttgttctgtcacctccggttatgattcataacggggaagaact-gttgtatcctgggaggatatgcgcttatgagg 350  Q
    ||||||||||||||||| | | |||||| ||| | | |||||| | ||||||||||| ||||||||||||||||||||    
T  3835777 agttgttctgtcacctctgat-atgatttatatcagagaagaatttgttgtatcctgagaggatatgcgcttatgagg 3835701  T

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Target: chr1 (Bit Score: 143; Significance: 6e-75; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 166 - 381
Target Start/End: Complemental strand, 12141874 - 12141663
Alignment:
Q  166 tatatactccctcacttcatatttatctatattcacacaaattaatttccctcatccaaaatattgagtttctgggttacatcacctgatatctttaaga 265  Q
    ||||||||||||||||||||||||||||| ||    |||||||| |||||||||||||||||||||||||| ||||||| |||  ||||||||||| | |    
T  12141874 tatatactccctcacttcatatttatctacat----acaaattattttccctcatccaaaatattgagtttttgggttatatcttctgatatctttgata 12141779  T
Q  266 taaatttgagttgttctgtcacctccggttatgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctca 365  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||    
T  12141778 taaatttgagttgttctgtcacctctagttatgattcataacggggaataattgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctca 12141679  T
Q  366 aagacagtgactatgt 381  Q
    | ||||||||||||||    
T  12141678 aggacagtgactatgt 12141663  T

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Target: chr1; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 216 - 381
Target Start/End: Complemental strand, 24981338 - 24981173
Alignment:
Q  216 ctcatccaaaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcataacggggaaga 315  Q
    |||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  24981338 ctcatccaaaatattgagtttctgtgttacatctcctgatatctttgagataaatttgagttgttctatcatctccggttatgattcataacggggaaga 24981239  T
Q  316 actgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgactatgt 381  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||| |||  |||||||||    
T  24981238 actgttgtatcctgggaggatatgtgcttatgaggcggataaaatcctcaaggacgctgactatgt 24981173  T

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Target: chr1; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 219 - 366
Target Start/End: Original strand, 1953632 - 1953779
Alignment:
Q  219 atccaaaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcataacggggaagaact 318  Q
    ||||||||| |||||||||||||||||||| ||||| ||||||  |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  1953632 atccaaaatgttgagtttctgggttacatctcctgacatctttgtgataaatttgagttgttctgtcacctcccgttatgattcataacagggaagaact 1953731  T
Q  319 gttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaa 366  Q
    |||||||||||||||||||| |||||||||||| ||| ||||||||||    
T  1953732 gttgtatcctgggaggatattcgcttatgaggcagataaaatcctcaa 1953779  T

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Target: chr1; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 211 - 381
Target Start/End: Original strand, 47580331 - 47580503
Alignment:
Q  211 tttccctcatccaaaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcataacggg 310  Q
    |||| |||||||||||| |||||||||||||||||||| ||||| ||||||  |||||||||||||| |||||||| ||  |||||||||||||||||||    
T  47580331 tttctctcatccaaaatgttgagtttctgggttacatctcctgacatctttgtgataaatttgagttcttctgtcatctttggttatgattcataacggg 47580430  T
Q  311 gaagaactgttgtatcctg--ggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgactatgt 381  Q
    ||||| |||||||||||||  ||||||||| |||||||||||| ||| ||||| |||| |||| |||||||||    
T  47580431 gaagacctgttgtatcctggtggaggatattcgcttatgaggcagataaaatcttcaaggacattgactatgt 47580503  T

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Target: chr1; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 226 - 342
Target Start/End: Original strand, 51465448 - 51465562
Alignment:
Q  226 atattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcataacggggaagaactgttgtat 325  Q
    ||||||||||||||||||||||| ||||||||||   |||||||||||||||||||||| |||||||  |||||||||||||||| ||||||||||||||    
T  51465448 atattgagtttctgggttacatctcctgatatctg--agataaatttgagttgttctgtaacctccgagtatgattcataacgggaaagaactgttgtat 51465545  T
Q  326 cctgggaggatatgcgc 342  Q
    ||||| || ||||||||    
T  51465546 cctggaagaatatgcgc 51465562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 273 - 371
Target Start/End: Complemental strand, 4242688 - 4242590
Alignment:
Q  273 gagttgttctgtcacctccggttatgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagaca 371  Q
    ||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||| |||||||||| ||||    
T  4242688 gagttgttctgtcaccttcgattatgattcataacggggaagaacagttgtatcctgggaggatatgcgctcatgagtcggataaaatcctcaaggaca 4242590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 311 - 381
Target Start/End: Complemental strand, 9111622 - 9111552
Alignment:
Q  311 gaagaactgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgactatgt 381  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||    
T  9111622 gaagaactgttgtatcctgggaagatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgt 9111552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 240 - 377
Target Start/End: Original strand, 43254081 - 43254217
Alignment:
Q  240 ggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcataacggggaagaac-tgttgtatcctgggaggatat 338  Q
    ||||||||| |||| ||||||| ||||| |||  ||||||||||||||||| | | ||||||||||   ||||||||| |||||||||||||||||||||    
T  43254081 ggttacatctcctgctatctttgagatagattcaagttgttctgtcacctctgat-atgattcatatatgggaagaacatgttgtatcctgggaggatat 43254179  T
Q  339 gcgcttatgaggcggatgaaatcctcaaagacagtgact 377  Q
    |||||||||||||| || ||||||| || ||||||||||    
T  43254180 gcgcttatgaggcgaat-aaatccttaaggacagtgact 43254217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 211 - 377
Target Start/End: Complemental strand, 38825658 - 38825492
Alignment:
Q  211 tttccctcatccaaaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcataacggg 310  Q
    |||| ||| ||| ||||||||| |||  ||||||||||  ||| ||||||| |||||||||  |||||||||| |||||  | | |||||||||| | |     
T  38825658 tttctctcctcctaaatattgaattttcgggttacatcttctgttatctttgagataaattcaagttgttctgccacctttgat-atgattcatagcaga 38825560  T
Q  311 gaagaact-gttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgact 377  Q
    |||||||| ||||||||||||||||||||||| |||||||| |||| ||||||| || ||||||||||    
T  38825559 gaagaacttgttgtatcctgggaggatatgcgtttatgaggaggataaaatccttaaggacagtgact 38825492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 250 - 377
Target Start/End: Original strand, 39197188 - 39197315
Alignment:
Q  250 cctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcataacggggaagaac-tgttgtatcctgggaggatatgcgcttatga 348  Q
    |||| ||||||| ||||| ||||||||||||||||||||| ||  |||||||||||  || || | || ||||||||||||| |||||||||||||||||    
T  39197188 cctgttatctttgagatatatttgagttgttctgtcaccttcgactatgattcatattggagagggacttgttgtatcctggtaggatatgcgcttatga 39197287  T
Q  349 ggcggatgaaatcctcaaagacagtgact 377  Q
    ||| ||| ||||||| ||| |||| ||||    
T  39197288 ggcagat-aaatccttaaatacagcgact 39197315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 224 - 377
Target Start/End: Complemental strand, 38828855 - 38828702
Alignment:
Q  224 aaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcataacggggaagaac-tgttg 322  Q
    ||||||||| ||| |||||||||||  ||  ||||||| |||||||||  |||||||||| || || | | |||||||||||   ||||||||| ||||     
T  38828855 aaatattgaatttttgggttacatcttctcttatcttttagataaattcaagttgttctgccaact-ctgatatgattcatagtagggaagaacttgttt 38828757  T
Q  323 tatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgact 377  Q
    |||||||||| |||||| |||||| |||||||| ||||||| || || |||||||    
T  38828756 tatcctgggaagatatgagcttataaggcggataaaatccttaaggatagtgact 38828702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 377
Target Start/End: Complemental strand, 49387689 - 49387621
Alignment:
Q  309 gggaagaac-tgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgact 377  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||| || | ||||||||    
T  49387689 gggaagaacatgttgtatcctgggaggatatgcgcttataaggcgaat-aaatccttaaggccagtgact 49387621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 4e-73; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 1789081 - 1788910
Alignment:
Q  211 tttccctcatccaaaatattgag-tttctgggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcataacgg 309  Q
    |||| |||||||||||||||||| ||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1789081 tttctctcatccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgagttgttctgtcacctccggttatgattcataacgg 1788982  T
Q  310 ggaagaactgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgactatgt 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  1788981 ggaagaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgt 1788910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 205 - 381
Target Start/End: Original strand, 38678618 - 38678790
Alignment:
Q  205 aattaatttccctcatccaaaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcat 304  Q
    ||||| |||| ||||||||||||||||| ||||||| || |||| | || |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  38678618 aattattttctctcatccaaaatattgaatttctgg-ttgcatctcttgttatctttaagataaatttgagttgttctgtcacctccgattatgattcat 38678716  T
Q  305 aacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgactatgt 381  Q
    ||||||||  |||||||||||||||  |||||||||||||||||| ||||| ||||||||||||||| |||||||||    
T  38678717 aacgggga--aactgttgtatcctgtaaggatatgcgcttatgagacggatcaaatcctcaaagaca-tgactatgt 38678790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 205 - 377
Target Start/End: Original strand, 17028285 - 17028457
Alignment:
Q  205 aattaatttccctcatccaaaat-attgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattca 303  Q
    ||||| |||| |||||||||||| ||||||||||| ||||||||| |||||||||| |   ||| ||||||| |||| ||||||||||||||||||||||    
T  17028285 aattattttctctcatccaaaattattgagtttctaggttacatctcctgatatctgtgt-atatatttgagctgttgtgtcacctccggttatgattca 17028383  T
Q  304 taacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgact 377  Q
    |||||||||||||||||  ||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||    
T  17028384 taacggggaagaactgtcatatcctgggaggatatgcgctaatgaggcggataaaatcctcaaggacagtgact 17028457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 205 - 377
Target Start/End: Original strand, 17558721 - 17558893
Alignment:
Q  205 aattaatttccctcatccaaaat-attgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattca 303  Q
    ||||| |||| |||||||||||| ||||||||||| ||||||||| |||||||||| |   ||| ||||||| |||| ||||||||||||||||||||||    
T  17558721 aattattttctctcatccaaaattattgagtttctaggttacatctcctgatatctgtgt-atatatttgagctgttgtgtcacctccggttatgattca 17558819  T
Q  304 taacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgact 377  Q
    |||||||||||||||||  ||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||    
T  17558820 taacggggaagaactgtcatatcctgggaggatatgcgctaatgaggcggataaaatcctcaaggacagtgact 17558893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 224 - 381
Target Start/End: Complemental strand, 39655869 - 39655710
Alignment:
Q  224 aaatattgagtttct-gggttacatcacctgat-atctttaagataaatttgagttgttctgtcacctccggttatgattcataacggggaagaactgtt 321  Q
    ||||||||||||||| |||||||||| ||   | |||||| ||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||    
T  39655869 aaatattgagtttcttgggttacatctccaacttatctttgagataaatttgagctgttctgtcacatccggttatgattcataacggagaagaactgtt 39655770  T
Q  322 gtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgactatgt 381  Q
    ||||| ||||||||||||| |||||||||||||| |||||||||| ||||||||||||||    
T  39655769 gtatcatgggaggatatgcacttatgaggcggataaaatcctcaaggacagtgactatgt 39655710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 205 - 340
Target Start/End: Original strand, 38676239 - 38676373
Alignment:
Q  205 aattaatttccctcatccaaaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcat 304  Q
    ||||| |||| ||||||||||||||||||||||||| ||  ||| |||| ||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  38676239 aattattttctctcatccaaaatattgagtttctgg-ttgtatctcctgttatctttaaaataaatttgagttgttctgtcacctccgattatgattcat 38676337  T
Q  305 aacggggaagaactgttgtatcctgggaggatatgc 340  Q
    |||||||||||| |||||||||||||||||||||||    
T  38676338 aacggggaagaattgttgtatcctgggaggatatgc 38676373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 277 - 381
Target Start/End: Complemental strand, 21185436 - 21185332
Alignment:
Q  277 tgttctgtcacctccggttatgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgac 376  Q
    |||| ||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  21185436 tgttttgtcacctccggttatgattcataacggggaagaactattatatgctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgac 21185337  T
Q  377 tatgt 381  Q
    |||||    
T  21185336 tatgt 21185332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 143 - 361
Target Start/End: Original strand, 21346985 - 21347198
Alignment:
Q  143 tgaacctgcacatatcatacatttatatactccctcacttcatatttatctatattcacacaaattaatttccctcatccaaaatattgagtttctgggt 242  Q
    ||||||||||||||  |||||||  |||| || |||||||||||||| ||| ||| ||     |||| |||| |||||||||| |||||||||| |||||    
T  21346985 tgaacctgcacatagtatacattcgtataatctctcacttcatatttttctgtataca-----attattttctctcatccaaagtattgagtttgtgggt 21347079  T
Q  243 tacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcataacggggaagaactgttgtatcctgggaggatatgcgc 342  Q
    |||||| || | | ||||| |||| | ||| |||||||| ||||||| |  ||||||||||||||| | |||||| |||||||| |||||||||||| ||    
T  21347080 tacatctccggttgtctttgagattattttcagttgttccgtcaccttcatttatgattcataacgtgaaagaacagttgtatcttgggaggatatgtgc 21347179  T
Q  343 ttatgaggcggatgaaatc 361  Q
    ||||||||||||| |||||    
T  21347180 ttatgaggcggataaaatc 21347198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 229 - 338
Target Start/End: Complemental strand, 4326837 - 4326729
Alignment:
Q  229 ttgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcataacggggaagaactgttgtatcct 328  Q
    |||||||||||| |||||||  || | ||||||  |||||||||||||||||||||||| ||| ||||| ||||||||||| |||||| || ||||||||    
T  4326837 ttgagtttctggattacatcttctaacatctttgtgataaatttgagttgttctgtcacatcctgttatcattcataacggagaagaaatg-tgtatcct 4326739  T
Q  329 gggaggatat 338  Q
     | |||||||    
T  4326738 agcaggatat 4326729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 205 - 381
Target Start/End: Original strand, 2590431 - 2590607
Alignment:
Q  205 aattaatttccctcatccaaaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcat 304  Q
    ||||| |||| |||||| |||||||||||||||||||||| ||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  2590431 aattattttctctcatctaaaatattgagtttctgggttatatctcctgatatctatgagataaatttgagttgttctgtcacctccggttatgattcat 2590530  T
Q  305 aacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgactatgt 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||    
T  2590531 aacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcgaataaaatcctcaaggacagtgactatgt 2590607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 205 - 381
Target Start/End: Complemental strand, 18739299 - 18739122
Alignment:
Q  205 aattaatttccctcatccaaaatattgag-tttctgggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattca 303  Q
    ||||| |||| |||||||||||||||||| ||||||||||||||| | |||||| ||| ||||||||| ||| |||||||||||||||| ||||||||||    
T  18739299 aattattttctctcatccaaaatattgaggtttctgggttacatctcatgatatatttgagataaattcgagctgttctgtcacctccgattatgattca 18739200  T
Q  304 taacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgactatgt 381  Q
    |||||||||||||| |||||||  |||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  18739199 taacggggaagaaccgttgtattgtgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgt 18739122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 205 - 421
Target Start/End: Original strand, 21189332 - 21189541
Alignment:
Q  205 aattaatttccctcatccaaaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcat 304  Q
    ||||| |||| |||||| ||| ||||||| |||||||||||||| || | ||||||| |||| | |||||||||||||||||||||| ||||||||||||    
T  21189332 aattattttctctcatctaaagtattgagcttctgggttacatctccggttatctttgagattattttgagttgttctgtcacctccagttatgattcat 21189431  T
Q  305 aacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgactatgtgactatgtcacacctcaggttag 404  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||        ||||||||| |||||||||||    
T  21189432 aacggggaataactgttgtatccggggaggatatgcgcttatgaggcggataaaatcctcaaggacagtga--------ctatgtcacgcctcaggttag 21189523  T
Q  405 at-aacagtttactattt 421  Q
    || |||||||||||||||    
T  21189524 ataaacagtttactattt 21189541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 233 - 381
Target Start/End: Complemental strand, 14433759 - 14433610
Alignment:
Q  233 gtttctgggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcataacggggaagaac-tgttgtatcctggg 331  Q
    |||||| ||||||||| |||||||||||| ||||||||||||||| |||||||||||  |||||||||||||||||||||||||| ||||||||| ||||    
T  14433759 gtttctaggttacatctcctgatatctttgagataaatttgagttattctgtcacctttggttatgattcataacggggaagaacatgttgtatcttggg 14433660  T
Q  332 aggatatgcgcttatgaggcggatgaaatcctcaaagacagtgactatgt 381  Q
    | ||| ||  |||||||||||||| |||||| ||| ||||||||||||||    
T  14433659 aagatgtgtacttatgaggcggataaaatccacaaggacagtgactatgt 14433610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 205 - 381
Target Start/End: Complemental strand, 35969460 - 35969288
Alignment:
Q  205 aattaatttccctcatccaaaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcat 304  Q
    ||||| |||| |||||| |||||||||||||||| |||||||||  | | ||||||| |||||||||||||||||||||| |||||| ||||||||||||    
T  35969460 aattattttctctcatctaaaatattgagtttctaggttacatcttcggttatctttgagataaatttgagttgttctgttacctcctgttatgattcat 35969361  T
Q  305 aacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgactatgt 381  Q
    ||||||||||||||||| || | ||    ||||||||||| |||||||||| ||||| |||| ||||||||||||||    
T  35969360 aacggggaagaactgtt-taacatg---tgatatgcgcttttgaggcggataaaatcttcaaggacagtgactatgt 35969288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 243 - 374
Target Start/End: Original strand, 1043114 - 1043244
Alignment:
Q  243 tacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcataacggggaagaactgttgtatcctgggaggatatgcgc 342  Q
    |||||| |||| ||||||| |||| |||||||  |||||||||||| ||| ||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  1043114 tacatctcctgttatctttgagatgaatttgacctgttctgtcacccccgattatgattcataacggg-aagaacggttgtatcctgggaggatatgcgc 1043212  T
Q  343 ttatgaggcggatgaaatcctcaaagacagtg 374  Q
     |||||| ||||| |||||||||| |||||||    
T  1043213 ctatgagacggataaaatcctcaaggacagtg 1043244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 27083173 - 27083126
Alignment:
Q  309 gggaagaac-tgttgtatcctgggaggatatgcgcttatgaggcggat 355  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  27083173 gggaagaacctgttgtatcctgggaggatatgcgcttgtgaggcggat 27083126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 377
Target Start/End: Complemental strand, 10941489 - 10941440
Alignment:
Q  327 ctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgact 377  Q
    |||||||||||||||||||||||||| || ||||||| || ||||||||||    
T  10941489 ctgggaggatatgcgcttatgaggcgaat-aaatccttaaggacagtgact 10941440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 377
Target Start/End: Complemental strand, 10947358 - 10947309
Alignment:
Q  327 ctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgact 377  Q
    |||||||||||||||||||||||||| || ||||||| || ||||||||||    
T  10947358 ctgggaggatatgcgcttatgaggcgaat-aaatccttaaggacagtgact 10947309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 211 - 381
Target Start/End: Original strand, 11673937 - 11674107
Alignment:
Q  211 tttccctcatccaaaatattgag-tttctgggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcataacgg 309  Q
    |||| |||||||||||||||||| ||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |    
T  11673937 tttctctcatccaaaatattgaggtttctgggttacatctcatgatatctttgagataaatttgagttgttctgtcacctccgattatgattcataac-g 11674035  T
Q  310 ggaagaactgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgactatgt 381  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  11674036 ggaacaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgt 11674107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 273 - 381
Target Start/End: Complemental strand, 31206745 - 31206637
Alignment:
Q  273 gagttgttctgtcacctccggttatgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacag 372  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||| ||||||||||||||||    
T  31206745 gagttgttctgtcacctccagttatgattcataacggggaagaactgttgtatcctgccaggatatgcgcttatgaggtggataaaatcctcaaagacag 31206646  T
Q  373 tgactatgt 381  Q
    |||||||||    
T  31206645 tgactatgt 31206637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 264 - 379
Target Start/End: Complemental strand, 39426579 - 39426464
Alignment:
Q  264 gataaatttgagttgttctgtcacctccggttatgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcct 363  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||| |||||||||| ||||| |||||||    
T  39426579 gataaatttgagttgttctgtcacctccggttatgattcataacagggaagaactgttttatcttgggaggatattcgcttatgagacggataaaatcct 39426480  T
Q  364 caaagacagtgactat 379  Q
    ||| ||||||||||||    
T  39426479 caaggacagtgactat 39426464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 273 - 381
Target Start/End: Complemental strand, 31210194 - 31210086
Alignment:
Q  273 gagttgttctgtcacctccggttatgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacag 372  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||| |||||||||| |||||    
T  31210194 gagttgttctgtcacctccgattatgattcataacggggaagaactgttgtaccccgggaggatatgcacttatgaggcggataaaatcctcaaggacag 31210095  T
Q  373 tgactatgt 381  Q
    |||||||||    
T  31210094 tgactatgt 31210086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 227 - 381
Target Start/End: Complemental strand, 3850705 - 3850550
Alignment:
Q  227 tattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcataacggggaagaact-gttgtat 325  Q
    |||||||||||||| ||| ||  | || ||||||| |||||||||||||||||||| ||||||| || ||||||||||| || ||||||||| |||||||    
T  3850705 tattgagtttctggattaaatatcatgttatctttgagataaatttgagttgttctatcacctctgggtatgattcataccgaggaagaactcgttgtat 3850606  T
Q  326 cctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgactatgt 381  Q
    | | ||||||||||||||||||||||| || ||||| |||| ||||||||||||||    
T  3850605 cataggaggatatgcgcttatgaggcgtataaaatcatcaaggacagtgactatgt 3850550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 217 - 381
Target Start/End: Complemental strand, 5435037 - 5434872
Alignment:
Q  217 tcatccaaaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcataacggggaagaa 316  Q
    |||||||||||||||||||| |||||||||||  ||||||| ||| |||||||||| ||||||||||||| |||   ||||||||| |||||||||||||    
T  5435037 tcatccaaaatattgagtttatgggttacatcttctgatatttttgagataaattttagttgttctgtcatctctatttatgattcttaacggggaagaa 5434938  T
Q  317 -ctgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgactatgt 381  Q
     || ||||||||||  || |||||||||||||||| |||  ||||| |||||||||  ||||||||    
T  5434937 cctcttgtatcctgacagaatatgcgcttatgaggtggaaaaaatcatcaaagacaacgactatgt 5434872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 138 - 239
Target Start/End: Complemental strand, 22301323 - 22301226
Alignment:
Q  138 aaaattgaacctgcacatatcatacatttatatactccctcacttcatatttatctatattcacacaaattaatttccctcatccaaaatattgagtttc 237  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    ||||| |||| |||  ||||||||||||||||||||||    
T  22301323 aaaattgaacctgcacatagcatacatttaaatactccctcacttcatatttatctat----acacatattattttttctcatccaaaatattgagtttc 22301228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 319 - 381
Target Start/End: Complemental strand, 22301224 - 22301162
Alignment:
Q  319 gttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgactatgt 381  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  22301224 gttgtatcttgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgt 22301162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 377
Target Start/End: Original strand, 15569565 - 15569668
Alignment:
Q  273 gagttgttctgtcacctccggttatgattcataacggggaagaac-tgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagaca 371  Q
    |||||||||||||||||| | | |||||||||| | | ||||||| |||||||||||||||||||||| ||||||||||||||| ||||||  || ||||    
T  15569565 gagttgttctgtcacctctgat-atgattcatatcagagaagaacctgttgtatcctgggaggatatgtgcttatgaggcggat-aaatccctaaggaca 15569662  T
Q  372 gtgact 377  Q
    ||||||    
T  15569663 gtgact 15569668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 239 - 377
Target Start/End: Complemental strand, 32352581 - 32352444
Alignment:
Q  239 gggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcataacggggaagaac-tgttgtatcctgggaggata 337  Q
    |||||||||| |||| ||||||  ||||| |||| || |||||||||||||| | |  ||||||||| | | ||||||  |||||| |||||||||||||    
T  32352581 gggttacatctcctgctatcttagagatagatttaagctgttctgtcacctctgatg-tgattcatatctgagaagaatatgttgtgtcctgggaggata 32352483  T
Q  338 tgcgcttatgaggcggatgaaatcctcaaagacagtgact 377  Q
    ||||||||||||||| || ||||||| || ||||||||||    
T  32352482 tgcgcttatgaggcgaat-aaatccttaaggacagtgact 32352444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 377
Target Start/End: Original strand, 13815772 - 13815840
Alignment:
Q  309 gggaagaac-tgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgact 377  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||| || ||||||| || ||||||||||    
T  13815772 gggaagaacatgttgtatcctgggaagatatgcgcttatgaggcgaat-aaatccttaaggacagtgact 13815840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 349
Target Start/End: Complemental strand, 2609726 - 2609644
Alignment:
Q  267 aaatttgagttgttctgtcacctccggttatgattcataacggggaagaac-tgttgtatcctgggaggatatgcgcttatgag 349  Q
    ||||| ||||||||||||||| || | | |||||||||| | | ||||||| |||||||||||| |||||||||||||||||||    
T  2609726 aaattcgagttgttctgtcacatctgat-atgattcatatcagagaagaacatgttgtatcctgcgaggatatgcgcttatgag 2609644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 116; Significance: 7e-59; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 211 - 381
Target Start/End: Original strand, 82557 - 82728
Alignment:
Q  211 tttccctcatccaaaatattgag-tttctgggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcataacgg 309  Q
    |||| |||||||||||||||||| |||||||||| |||| | |||||||||| ||||||||||||| ||||||||||| ||||| ||||||| |||||||    
T  82557 tttctctcatccaaaatattgaggtttctgggttgcatctcatgatatctttgagataaatttgagatgttctgtcacatccggctatgatttataacgg 82656  T
Q  310 ggaagaactgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgactatgt 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||    
T  82657 ggaagaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggatagtgactatgt 82728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 216 - 381
Target Start/End: Original strand, 18594756 - 18594921
Alignment:
Q  216 ctcatccaaaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcataacggggaaga 315  Q
    |||||| |||||||||||||| ||||||||||| |||||||||||| | ||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  18594756 ctcatctaaaatattgagtttttgggttacatctcctgatatctttgacataaatttgagttgttctgtcaccttcagttatgattcataacggggaaga 18594855  T
Q  316 actgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgactatgt 381  Q
    |||||||||||||| ||| ||||||||||||||||||||| ||||| |||| ||||||||| ||||    
T  18594856 actgttgtatcctgtgagaatatgcgcttatgaggcggataaaatcttcaaggacagtgacaatgt 18594921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 166 - 378
Target Start/End: Complemental strand, 26703240 - 26703031
Alignment:
Q  166 tatatactccctcacttcatatttatctatattcacacaaattaatttccctcatccaaaatattgagtttctgggttacatcacctgatatctttaaga 265  Q
    |||||||||||||||||| |||||||||||| |||    ||||| |||| |||||||||||||||||||||   ||||||||| | |||||||| | |||    
T  26703240 tatatactccctcacttcttatttatctatactca----aattattttctctcatccaaaatattgagtttacaggttacatctcttgatatctgtgaga 26703145  T
Q  266 taaatttgagttgttctgtcacctccggttatgattcataacggggaagaac-tgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctc 364  Q
    |||||||||  ||||||||||||||||||| ||||||||| | | ||||||| ||||||||| |||||||||||||| ||||||||||||| ||||||||    
T  26703144 taaatttgaactgttctgtcacctccggttttgattcataccagagaagaacttgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctc 26703045  T
Q  365 aaagacagtgacta 378  Q
    || |||||||||||    
T  26703044 aaggacagtgacta 26703031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 166 - 378
Target Start/End: Complemental strand, 26972973 - 26972764
Alignment:
Q  166 tatatactccctcacttcatatttatctatattcacacaaattaatttccctcatccaaaatattgagtttctgggttacatcacctgatatctttaaga 265  Q
    |||||||||||||||||| |||||||||||| |||    ||||| |||| |||||||||||||||||||||   ||||||||| | |||||||| | |||    
T  26972973 tatatactccctcacttcttatttatctatactca----aattattttctctcatccaaaatattgagtttacaggttacatctcttgatatctgtgaga 26972878  T
Q  266 taaatttgagttgttctgtcacctccggttatgattcataacggggaagaac-tgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctc 364  Q
    |||||||||  ||||||||||||||||||| ||||||||| | | ||||||| ||||||||| |||||||||||||| ||||||||||||| ||||||||    
T  26972877 taaatttgaactgttctgtcacctccggttttgattcataccagagaagaacttgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctc 26972778  T
Q  365 aaagacagtgacta 378  Q
    || |||||||||||    
T  26972777 aaggacagtgacta 26972764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 205 - 379
Target Start/End: Original strand, 39292036 - 39292203
Alignment:
Q  205 aattaatttccctcatccaaaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcat 304  Q
    ||||| |||| |||||| ||| ||||||| |||||||||||||| || | ||||||| |||| | ||||||||||| |||||||       |||||||||    
T  39292036 aattattttctctcatctaaagtattgagcttctgggttacatctccggttatctttgagattattttgagttgttatgtcacc-------atgattcat 39292128  T
Q  305 aacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgactat 379  Q
    ||||| ||||||||||||||| |||| |||||||||||||||||||||||| ||||||| || ||||||||||||    
T  39292129 aacggagaagaactgttgtattctggaaggatatgcgcttatgaggcggataaaatccttaaggacagtgactat 39292203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 355
Target Start/End: Original strand, 13291946 - 13292034
Alignment:
Q  267 aaatttgagttgttctgtcacctccggttatgattcataacggggaagaac-tgttgtatcctgggaggatatgcgcttatgaggcggat 355  Q
    ||||| |||||||||| ||||||| | | |||||||||| | | ||| ||| ||||||||||||||||||||||||||||||||||||||    
T  13291946 aaattcgagttgttctatcacctctgat-atgattcatatcagagaataacctgttgtatcctgggaggatatgcgcttatgaggcggat 13292034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 6667898 - 6667730
Alignment:
Q  211 tttccctcatccaaaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcataacggg 310  Q
    |||| ||||||||| ||||||| ||  ||||||||||| ||||||||||   ||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  6667898 tttctctcatccaatatattgaattcatgggttacatctcctgatatctg--agatatatttgagctgttctgtcacctccggttatgattcataacggg 6667801  T
Q  311 gaagaactgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgactatgt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||    
T  6667800 gaagaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaagaacagtgactatgt 6667730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 222 - 381
Target Start/End: Complemental strand, 13010702 - 13010544
Alignment:
Q  222 caaaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcataacggggaagaactgtt 321  Q
    ||||||||||||||| |||||||||||  ||||||||| | ||||| ||||||||||||||||||| |||| ||||||||| |||||| |||||||||||    
T  13010702 caaaatattgagtttttgggttacatcttctgatatctctgagatatatttgagttgttctgtcacatccg-ttatgattcgtaacggagaagaactgtt 13010604  T
Q  322 gtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgactatgt 381  Q
     |||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  13010603 atatcctaggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgt 13010544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 6671564 - 6671402
Alignment:
Q  211 tttccctcatccaaaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcataacggg 310  Q
    |||| ||||||||| ||||||| ||  ||||||||||| ||||||||||   ||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  6671564 tttctctcatccaagatattgaattcatgggttacatctcctgatatctg--agatatatttgagctgttctgtcacctccggttatgattcataacggg 6671467  T
Q  311 gaagaactgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgactatgt 381  Q
    ||||||||||||||||||||||||||||||      ||||||||| |||||||||| ||| ||||||||||    
T  6671466 gaagaactgttgtatcctgggaggatatgc------gaggcggataaaatcctcaaggacggtgactatgt 6671402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 273 - 381
Target Start/End: Original strand, 44643451 - 44643558
Alignment:
Q  273 gagttgttctgtcacctccggttatgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacag 372  Q
    |||||||||||||| ||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||  ||| || || |||||    
T  44643451 gagttgttctgtcatctctggttatgattcatatcggggaagaactgttgtatcctaggaggatatgcgcttatgaggcggatagaat-ctgaaggacag 44643549  T
Q  373 tgactatgt 381  Q
    |||||||||    
T  44643550 tgactatgt 44643558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 295 - 421
Target Start/End: Original strand, 895463 - 895581
Alignment:
Q  295 tatgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgactatgtgactatgtcacac 394  Q
    |||||||||||   |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||        |||||||||||||      
T  895463 tatgattcatattagggaagaacttttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggaca--------gtgactatgtcacga 895554  T
Q  395 ctcaggttagataacagtttactattt 421  Q
    |||||||||||||||||||||||||||    
T  895555 ctcaggttagataacagtttactattt 895581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 238 - 355
Target Start/End: Complemental strand, 31767601 - 31767484
Alignment:
Q  238 tgggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcataacggggaagaac-tgttgtatcctgggaggat 336  Q
    ||||||||||| |||| ||| |||  |||| |||  ||||||||||||||||| | |  ||||||||| | ||||||||| ||||||||||| |||||||    
T  31767601 tgggttacatctcctgctatgtttgtgatagattcaagttgttctgtcacctctgatg-tgattcatatcagggaagaacatgttgtatcctaggaggat 31767503  T
Q  337 atgcgcttatgaggcggat 355  Q
    ||| |||||||||||||||    
T  31767502 atgtgcttatgaggcggat 31767484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 381
Target Start/End: Complemental strand, 20058177 - 20058114
Alignment:
Q  318 tgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgactatgt 381  Q
    ||||||||| ||| |||||| ||||| ||||||||||| |||||||||| ||||||||||||||    
T  20058177 tgttgtatcgtggaaggatacgcgctaatgaggcggataaaatcctcaaggacagtgactatgt 20058114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 352
Target Start/End: Original strand, 43287813 - 43287926
Alignment:
Q  239 gggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcataacggggaagaac-tgttgtatcctgggaggata 337  Q
    |||||||||| |||| ||||||| ||||| |||  || |||||||||||||| | |  ||||||||| | | ||||||  ||||||||||||| | ||||    
T  43287813 gggttacatctcctgctatctttgagatagattcaagctgttctgtcacctctgatg-tgattcatatctgagaagaatatgttgtatcctggaaagata 43287911  T
Q  338 tgcgcttatgaggcg 352  Q
    |||||||||||||||    
T  43287912 tgcgcttatgaggcg 43287926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 262
Target Start/End: Complemental strand, 20058249 - 20058192
Alignment:
Q  205 aattaatttccctcatccaaaatattgagtttctgggttacatcacctgatatcttta 262  Q
    ||||| |||| |||||||||| |||||||||||| ||||||||| || | ||||||||    
T  20058249 aattattttctctcatccaaattattgagtttctaggttacatctccggttatcttta 20058192  T

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Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 222 - 366
Target Start/End: Complemental strand, 11634340 - 11634196
Alignment:
Q  222 caaaatattgagtttctgggttacatcacctgatatctttaagataaatttgagttgttctgtcacctccggttatgattcataacggggaagaac-tgt 320  Q
    |||||||||||||||||| ||| ||||   || ||| |||| ||||||||||||||||| ||| |||| | |||||||||||||||||||||| || |||    
T  11634340 caaaatattgagtttctgagttgcatcttatgttattttta-gataaatttgagttgttgtgttacctgcagttatgattcataacggggaaggacatgt 11634242  T
Q  321 tgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaa 366  Q
    ||||||||||||||||||||| ||| |||| |||| ||||||||||    
T  11634241 tgtatcctgggaggatatgcgtttacgaggtggataaaatcctcaa 11634196  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 166 - 377
Target Start/End: Complemental strand, 19930256 - 19930051
Alignment:
Q  166 tatatactccctcacttcatatttatctatattcacacaaattaatttccctcatccaaaatattgagtttc-tgggttacatcacctgatatctttaag 264  Q
    ||||||||| ||||||||||||||  |||||    ||||| ||| |||| || ||||||||||||||||||  ||||||||||| |||| ||||||| ||    
T  19930256 tatatactctctcacttcatatttccctata----cacaa-ttattttctcttatccaaaatattgagttttgtgggttacatctcctgctatctttgag 19930162  T
Q  265 ataaatttgagttgttctgtcacctccggttatgattcataacggggaagaac-tgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcct 363  Q
    ||| |||  ||||||||| ||||||| | |  ||||||||  | ||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||    
T  19930161 atagattcaagttgttctatcacctctgatg-tgattcatctcagggaagaacatgttgtatc-tgggaggatatgcgcttatgaggcggat-aaatcct 19930065  T
Q  364 caaagacagtgact 377  Q
     || ||| ||||||    
T  19930064 taaggacggtgact 19930051  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 377
Target Start/End: Complemental strand, 9372309 - 9372227
Alignment:
Q  295 tatgattcataacggggaagaac-tgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgact 377  Q
    ||||||||||| | |||| |||| ||||||||||||||| ||||||||||||||||||| || ||||||| || ||||||||||    
T  9372309 tatgattcatatcagggatgaacctgttgtatcctgggacgatatgcgcttatgaggcgaat-aaatccttaaggacagtgact 9372227  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 377
Target Start/End: Original strand, 2353196 - 2353298
Alignment:
Q  274 agttgttctgtcacctccggttatgattcataacggggaagaac-tgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacag 372  Q
    |||||||||||||||||   | |||||||||| | | ||||||| |||||||||||||||||||| || |||||||||||||| ||||||| || ||||     
T  2353196 agttgttctgtcacctcttat-atgattcatatcagagaagaacctgttgtatcctgggaggataagcacttatgaggcggat-aaatccttaaggacaa 2353293  T
Q  373 tgact 377  Q
    |||||    
T  2353294 tgact 2353298  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 377
Target Start/End: Complemental strand, 42253635 - 42253577
Alignment:
Q  318 tgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgact 377  Q
    ||||||||||| |||||||||||||||||||||||| | ||||||| || ||||||||||    
T  42253635 tgttgtatccttggaggatatgcgcttatgaggcgggt-aaatccttaaggacagtgact 42253577  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 421
Target Start/End: Complemental strand, 16366445 - 16366407
Alignment:
Q  383 actatgtcacacctcaggttagataacagtttactattt 421  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  16366445 actatgtcacgcctcaggttagataacagtttactattt 16366407  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 377
Target Start/End: Complemental strand, 26445191 - 26445109
Alignment:
Q  295 tatgattcataacggggaagaac-tgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagtgact 377  Q
    ||||||||||| | ||||||||| ||||||||| ||  ||||||| || ||||||||||||| ||||||| || ||||||||||    
T  26445191 tatgattcatatcagggaagaacatgttgtatcttgacaggatatacgattatgaggcggat-aaatccttaaggacagtgact 26445109  T

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Target: scaffold0028 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 273 - 381
Target Start/End: Original strand, 110120 - 110227
Alignment:
Q  273 gagttgttctgtcacctccggttatgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacag 372  Q
    |||||||||||||||||| |   |||||||||| | | |||||||||||||||| |||||||||||||| ||||||||||||| |||||||||| |||||    
T  110120 gagttgttctgtcacctctgac-atgattcatatcagcgaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacag 110218  T
Q  373 tgactatgt 381  Q
    |||||||||    
T  110219 tgactatgt 110227  T

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Target: scaffold0028; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 273 - 381
Target Start/End: Original strand, 127699 - 127806
Alignment:
Q  273 gagttgttctgtcacctccggttatgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacag 372  Q
    |||||||||||||||||| |   |||||||||| | |||||||||||||||||| |||||||||||||| || |||||||||| |||||||||| |||||    
T  127699 gagttgttctgtcacctctgac-atgattcatatcagggaagaactgttgtatcatgggaggatatgcgtttctgaggcggataaaatcctcaaggacag 127797  T
Q  373 tgactatgt 381  Q
    |||||||||    
T  127798 tgactatgt 127806  T

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Target: scaffold0028; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 421
Target Start/End: Original strand, 110218 - 110259
Alignment:
Q  380 gtgactatgtcacacctcaggttagataacagtttactattt 421  Q
    ||||||||||||| ||||| |||||||||||| |||||||||    
T  110218 gtgactatgtcacgcctcatgttagataacagattactattt 110259  T

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Target: scaffold0076 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 274 - 381
Target Start/End: Complemental strand, 6877 - 6771
Alignment:
Q  274 agttgttctgtcacctccggttatgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggatgaaatcctcaaagacagt 373  Q
    ||||||||||||| ||| | | |||||||||| | ||||| |||||||||||| ||| ||||||||| |||||||||||||| |||||||||| ||||||    
T  6877 agttgttctgtcatctctgat-atgattcatatcagggaaaaactgttgtatcatggaaggatatgcacttatgaggcggataaaatcctcaatgacagt 6779  T
Q  374 gactatgt 381  Q
    ||||||||    
T  6778 gactatgt 6771  T

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Target: scaffold0216 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 355
Target Start/End: Original strand, 12112 - 12194
Alignment:
Q  273 gagttgttctgtcacctccggttatgattcataacggggaagaact-gttgtatcctgggaggatatgcgcttatgaggcggat 355  Q
    |||||||||||||||||| | | ||||||||||   |||||||||| |||||||||| ||| ||||||||||| ||||||||||    
T  12112 gagttgttctgtcacctctgat-atgattcatataagggaagaacttgttgtatcctaggatgatatgcgcttgtgaggcggat 12194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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