View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0254-INSERTION-1 (Length: 514)

Name: NF0254-INSERTION-1
Description: NF0254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0254-INSERTION-1
NF0254-INSERTION-1
[»] chr6 (36 HSPs)
chr6 (1-514)||(33358536-33359049)
chr6 (1-177)||(33644366-33644542)
chr6 (1-165)||(33262644-33262808)
chr6 (1-160)||(33285641-33285800)
chr6 (1-177)||(33399060-33399236)
chr6 (1-152)||(33057600-33057751)
chr6 (1-180)||(33271828-33272007)
chr6 (1-165)||(31562647-31562811)
chr6 (1-165)||(33388178-33388342)
chr6 (1-155)||(33410033-33410187)
chr6 (1-157)||(33304510-33304666)
chr6 (1-156)||(9166779-9166934)
chr6 (19-165)||(28870013-28870159)
chr6 (201-336)||(33644595-33644726)
chr6 (336-407)||(9166471-9166542)
chr6 (334-405)||(33644765-33644836)
chr6 (333-406)||(33285305-33285378)
chr6 (333-394)||(33057301-33057362)
chr6 (333-406)||(33304195-33304268)
chr6 (211-336)||(33387976-33388097)
chr6 (201-252)||(33398956-33399007)
chr6 (336-406)||(33262337-33262407)
chr6 (201-336)||(33304306-33304437)
chr6 (201-253)||(33262527-33262579)
chr6 (338-394)||(33387877-33387933)
chr6 (201-251)||(33057469-33057519)
chr6 (201-251)||(33271689-33271739)
chr6 (201-252)||(28870224-28870275)
chr6 (346-397)||(31563061-31563112)
chr6 (204-250)||(33285501-33285547)
chr6 (334-386)||(28870394-28870446)
chr6 (201-253)||(33409873-33409925)
chr6 (479-514)||(33387775-33387810)
chr6 (206-273)||(9166637-9166700)
chr6 (295-336)||(33057400-33057441)
chr6 (348-408)||(33409687-33409747)
[»] chr2 (3 HSPs)
chr2 (1-167)||(17440706-17440872)
chr2 (357-445)||(17441110-17441198)
chr2 (201-251)||(17440935-17440985)
[»] scaffold1408 (3 HSPs)
scaffold1408 (1-189)||(641-829)
scaffold1408 (334-408)||(353-427)
scaffold1408 (201-253)||(545-597)
[»] scaffold0428 (3 HSPs)
scaffold0428 (1-189)||(6387-6575)
scaffold0428 (334-408)||(6099-6173)
scaffold0428 (201-253)||(6291-6343)
[»] chr4 (15 HSPs)
chr4 (20-150)||(31157250-31157380)
chr4 (1-147)||(31498874-31499020)
chr4 (9-150)||(31148336-31148477)
chr4 (1-150)||(31478819-31478968)
chr4 (29-150)||(31504032-31504153)
chr4 (334-408)||(31499280-31499354)
chr4 (48-143)||(31472411-31472506)
chr4 (334-396)||(31472775-31472837)
chr4 (206-333)||(31479068-31479191)
chr4 (211-333)||(31472615-31472733)
chr4 (335-407)||(31479234-31479306)
chr4 (40-97)||(31017634-31017691)
chr4 (16-115)||(31491627-31491726)
chr4 (346-400)||(31504424-31504478)
chr4 (16-58)||(31526532-31526574)
[»] chr7 (1 HSPs)
chr7 (28-142)||(6785240-6785354)


Alignment Details
Target: chr6 (Bit Score: 510; Significance: 0; HSPs: 36)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 1 - 514
Target Start/End: Complemental strand, 33359049 - 33358536
Alignment:
Q  1 aattgaatgtttacattggctagaaatattaaatttagggggaaacgattttgtgacactacctagcctgaggaagctttctaaacttgtatatttaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33359049 aattgaatgtttacattggctagaaatattaaatttagggggaaacgattttgtgacactacctagcctgaggaagctttctaaacttgtatatttaaat 33358950  T
Q  101 ttggaacattgcaagttgttggaatctttgcctcaacttccttttcctaccactattgggtgggaacaagatgagaacaacaaatattaccagattatag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33358949 ttggaacattgcaagttgttggaatctttgcctcaacttccttttcctaccactattgggtgggaacaagatgagaacaacaaatattaccagattatag 33358850  T
Q  201 gagagggaacgttgcagtagcatgacactttcatggatgaaacaattcattcattctggcaaacccaccatcctaccctgactattttcatagcattcaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33358849 gagagggaacgttgcagtagcatgacactttcatggatgaaacaattcattcattctggcaaacccaccatcctaccctgactattttcatagcattcaa 33358750  T
Q  301 atagttactccaggaagtgaaattctaagttggatctcctattaggcatgacaataacaataatgtcattggttttgtatgttgtgcagtattttccatg 400  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33358749 atagttactccaggaagtgaaatgctaagttggatctcctattaggcatgacaataacaataatgtcattggttttgtatgttgtgcagtattttccatg 33358650  T
Q  401 acacctcagcatgggtattttccaccgtggtcccttatggaactgactttaactacagattccaatagtattttgaggaaaatgagtgttccagtaattc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33358649 acacctcagcatgggtattttccaccgtggtcccttatggaactgactttaactacagattccaatagtattttgaggaaaatgagtgttccagtaattc 33358550  T
Q  501 tcaatggaggtctt 514  Q
    ||||||||||||||    
T  33358549 tcaatggaggtctt 33358536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 33644366 - 33644542
Alignment:
Q  1 aattgaatgtttacattggctagaaatattaaatttagggggaaacgattttgtgacactacctagcctgaggaagctttctaaacttgtatatttaaat 100  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33644366 aattgaatgtttacattcgctagaaagattaaatttagggggaaactattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaat 33644465  T
Q  101 ttggaacattgcaagttgttggaatctttgcctcaacttccttttcctaccactattgggtgggaacaagatgagaa 177  Q
    |||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||| |||||||||    
T  33644466 ttggaacactgcaagttgttggaatctttgcctcaacttccttcccctaccactattgggcgggaacgagatgagaa 33644542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 33262808 - 33262644
Alignment:
Q  1 aattgaatgtttacattggctagaaatattaaatttagggggaaacgattttgtgacactacctagcctgaggaagctttctaaacttgtatatttaaat 100  Q
    ||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33262808 aattgaatgcttacattggctagaaagattaaatttagggggaaatgattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaat 33262709  T
Q  101 ttggaacattgcaagttgttggaatctttgcctcaacttccttttcctaccactattgggtggga 165  Q
    ||||| ||||||| ||||||||||||||||||||||||||||| ||||||| |||||||| ||||    
T  33262708 ttggagcattgcaggttgttggaatctttgcctcaacttccttctcctacctctattgggcggga 33262644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 33285800 - 33285641
Alignment:
Q  1 aattgaatgtttacattggctagaaatattaaatttagggggaaacgattttgtgacactacctagcctgaggaagctttctaaacttgtatatttaaat 100  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||| || ||||||||||||||||||    
T  33285800 aattgaatgtttatattggctagaaatattaaacttagggggaaacaattttgtgacactacctagcctgagaaagctgtccaaacttgtatatttaaat 33285701  T
Q  101 ttggaacattgcaagttgttggaatctttgcctcaacttccttttcctaccactattggg 160  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33285700 ttggagcattgcaagttgttggaatctttgcctcaacttccttttcctaccaatattggg 33285641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 33399236 - 33399060
Alignment:
Q  1 aattgaatgtttacattggctagaaatattaaatttagggggaaacgattttgtgacactacctagcctgaggaagctttctaaacttgtatatttaaat 100  Q
    |||||||  ||||||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  33399236 aattgaagatttacattggctagaaagattaaatttaaagggaaacaattttgtgacactacctagcctgaggaagctttccgaacttgtatatttaaat 33399137  T
Q  101 ttggaacattgcaagttgttggaatctttgcctcaacttccttttcctaccactattgggtgggaacaagatgagaa 177  Q
    |||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||| |||||||||    
T  33399136 ttggaacactgcaagttgttggaatctttgcctcaacttccttcccctaccactattgggcgggaacgagatgagaa 33399060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 33057751 - 33057600
Alignment:
Q  1 aattgaatgtttacattggctagaaatattaaatttagggggaaacgattttgtgacactacctagcctgaggaagctttctaaacttgtatatttaaat 100  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||    
T  33057751 aattgaatgtttacattggctagaaagattaaatttagcgggaaacgattttgtgacattacctagcctgaggaagctatccaaacttgtatatttaaat 33057652  T
Q  101 ttggaacattgcaagttgttggaatctttgcctcaacttccttttcctacca 152  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  33057651 ttggagcattgcaaattgttggaatctttgcctcaacttccttttcctacca 33057600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 33272007 - 33271828
Alignment:
Q  1 aattgaatgtttacattggctagaaatattaaatttagggggaaacgattttgtgacactacctagcctgaggaagctttctaaacttgtatatttaaat 100  Q
    |||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33272007 aattgaatgtttacattggctagaaagattagatttagggggaaacaattttgtgacactacctagcctgaggaagctttccaaacttgtatatttaaat 33271908  T
Q  101 ttggaacattgcaagttgttggaatctttgcctcaacttccttttcctaccactattgggtgggaacaagatgagaacaa 180  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||  | |||| |||| |||| ||| | ||||||||    
T  33271907 ttggaacattgcaagttgttggaatctttgcctcgacttccttctccacctactagtgggcgggatcaacaagagaacaa 33271828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 31562647 - 31562811
Alignment:
Q  1 aattgaatgtttacattggctagaaatattaaatttagggggaaacgattttgtgacactacctagcctgaggaagctttctaaacttgtatatttaaat 100  Q
    |||||||||||||   | |||||||| ||||||||||||||||||| |||||||||||||||||||| || |||||||||| ||||||||||||||||||    
T  31562647 aattgaatgtttaagctcgctagaaagattaaatttagggggaaactattttgtgacactacctagcttgtggaagctttccaaacttgtatatttaaat 31562746  T
Q  101 ttggaacattgcaagttgttggaatctttgcctcaacttccttttcctaccactattgggtggga 165  Q
    ||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  31562747 ttggagcattgcgagttgttggaatctttgcctcaacttccttctcctaccactattgggcggga 31562811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 33388342 - 33388178
Alignment:
Q  1 aattgaatgtttacattggctagaaatattaaatttagggggaaacgattttgtgacactacctagcctgaggaagctttctaaacttgtatatttaaat 100  Q
    ||||||||||||||| |  ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  33388342 aattgaatgtttacactcactagaaaaattaaatttagggggaaacgattttgtgacactacctagcttgaggaagctttccaaacttgtatatttaaat 33388243  T
Q  101 ttggaacattgcaagttgttggaatctttgcctcaacttccttttcctaccactattgggtggga 165  Q
    ||||| ||||||||||| ||| ||||||| ||||||||||||| || ||||||||||||| ||||    
T  33388242 ttggagcattgcaagttcttgaaatcttttcctcaacttccttctcttaccactattgggcggga 33388178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 33410187 - 33410033
Alignment:
Q  1 aattgaatgtttacattggctagaaatattaaatttagggggaaacgattttgtgacactacctagcctgaggaagctttctaaacttgtatatttaaat 100  Q
    ||||||| ||||||||| |||||||| |||| |||||| ||||||| |||||||||||||||||||| ||||||||||||| ||||||| ||||||| ||    
T  33410187 aattgaaggtttacattcgctagaaagattatatttagcgggaaactattttgtgacactacctagcttgaggaagctttccaaacttgaatatttagat 33410088  T
Q  101 ttggaacattgcaagttgttggaatctttgcctcaacttccttttcctaccacta 155  Q
    ||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33410087 ttgcagcattgcaagttgttggaatctttgcctcaacttccttttcctaccacta 33410033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 33304666 - 33304510
Alignment:
Q  1 aattgaatgtttacattggctagaaatattaaatttagggggaaacgattttgtgacactacctagcctgaggaagctttctaaacttgtatatttaaat 100  Q
    ||||||||||||| | | |||||||| |||||| |||| ||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  33304666 aattgaatgtttatactcgctagaaagattaaacttagagggaaacaattttgtgactctacctagcctgaggaagctttccaaacttgtatatttaaat 33304567  T
Q  101 ttggaacattgcaagttgttggaatctttgcctcaacttccttttcctaccactatt 157  Q
    ||| | ||||||| ||||||||||||||||||||||||||||| |||||||| ||||    
T  33304566 ttgcagcattgcatgttgttggaatctttgcctcaacttccttctcctaccaatatt 33304510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 9166934 - 9166779
Alignment:
Q  1 aattgaatgtttacattggctagaaatattaaatttagggggaaacgattttgtgacactacctagcctgaggaagctttctaaacttgtatatttaaat 100  Q
    ||||||||||||||  |||||||||| |||||| |||||||||| |||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||    
T  9166934 aattgaatgtttacggtggctagaaagattaaacttagggggaatcgattttgcgacactacctagcttgaggaagctttccaaacttgtatatttaaat 9166835  T
Q  101 ttggaacattgcaagttgttggaatctttgcctcaacttccttttcctaccactat 156  Q
    ||||| ||||||| ||||||||| | ||||||||||||||||||| ||| ||||||    
T  9166834 ttggagcattgcaggttgttggagtttttgcctcaacttcctttttctaacactat 9166779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 28870013 - 28870159
Alignment:
Q  19 gctagaaatattaaatttagggggaaacgattttgtgacactacctagcctgaggaagctttctaaacttgtatatttaaatttggaacattgcaagttg 118  Q
    |||||||| |||||| ||| |||||||| ||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||    
T  28870013 gctagaaagattaaacttacggggaaactattttgtgacactgcctagcctgaggaagctttccaaacttgaatatttaaatttggagcattgcaagttg 28870112  T
Q  119 ttggaatctttgcctcaacttccttttcctaccactattgggtggga 165  Q
    || |||||||||||||||||||||| ||||||| |||| ||| ||||    
T  28870113 tttgaatctttgcctcaacttccttctcctacccctatcgggcggga 28870159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 201 - 336
Target Start/End: Original strand, 33644595 - 33644726
Alignment:
Q  201 gagagggaacgttgcagtagcatgacactttcatggatgaaacaattcattcattctggcaaacccaccatcctaccctgactattttcatagcattcaa 300  Q
    ||||||||||||||||| ||||||||| |||||||||||| ||||||||||||    |||||||| || |||||||||   ||| ||| |||| | ||||    
T  33644595 gagagggaacgttgcaggagcatgacattttcatggatgatacaattcattca----ggcaaacctacaatcctacccaacctactttgataggactcaa 33644690  T
Q  301 atagttactccaggaagtgaaattctaagttggatc 336  Q
    || || ||||||||||||||||| | ||||||||||    
T  33644691 attgtaactccaggaagtgaaataccaagttggatc 33644726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 336 - 407
Target Start/End: Complemental strand, 9166542 - 9166471
Alignment:
Q  336 ctcctattaggcatgacaataacaataatgtcattggttttgtatgttgtgcagtattttccatgacacctc 407  Q
    ||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||| |||||| ||||||    
T  9166542 ctcctattatgcatgacaataacaataatatcattggctttgtatgttgtgcagtattctccatggcacctc 9166471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 334 - 405
Target Start/End: Original strand, 33644765 - 33644836
Alignment:
Q  334 atctcctattaggcatgacaataacaataatgtcattggttttgtatgttgtgcagtattttccatgacacc 405  Q
    ||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| ||||    
T  33644765 atctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcacc 33644836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 406
Target Start/End: Complemental strand, 33285378 - 33285305
Alignment:
Q  333 gatctcctattaggcatgacaataacaataatgtcattggttttgtatgttgtgcagtattttccatgacacct 406  Q
    |||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||| |||||| || |||||    
T  33285378 gatctcctattatgcatgacaataacaataatatcattggctttgtatgttgtgcagtgttttccgtggcacct 33285305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 333 - 394
Target Start/End: Complemental strand, 33057362 - 33057301
Alignment:
Q  333 gatctcctattaggcatgacaataacaataatgtcattggttttgtatgttgtgcagtattt 394  Q
    ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| ||||    
T  33057362 gatctcctattaggcatgacaatgacaataatatcattggtattgtatgttgtgcagcattt 33057301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 333 - 406
Target Start/End: Complemental strand, 33304268 - 33304195
Alignment:
Q  333 gatctcctattaggcatgacaataacaataatgtcattggttttgtatgttgtgcagtattttccatgacacct 406  Q
    |||||||||||| |||||||||||||||| || ||||||| ||| |||||||||| |||||||||||| |||||    
T  33304268 gatctcctattatgcatgacaataacaattatatcattggctttctatgttgtgcggtattttccatggcacct 33304195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 211 - 336
Target Start/End: Complemental strand, 33388097 - 33387976
Alignment:
Q  211 gttgcagtagcatgacactttcatggatgaaacaattcattcattctggcaaacccaccatcctaccctgactattttcatagcattcaaatagttactc 310  Q
    ||||||||||||||||| |||||||||||| |||||| ||| |    |||||||| || | ||||||||| ||||||| |||  |||||||| ||||||     
T  33388097 gttgcagtagcatgacattttcatggatgacacaatttattaa----ggcaaaccgacaaacctaccctgcctattttgatacgattcaaattgttacta 33388002  T
Q  311 caggaagtgaaattctaagttggatc 336  Q
    ||||||||||||| |  |||||||||    
T  33388001 caggaagtgaaataccgagttggatc 33387976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 201 - 252
Target Start/End: Complemental strand, 33399007 - 33398956
Alignment:
Q  201 gagagggaacgttgcagtagcatgacactttcatggatgaaacaattcattc 252  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  33399007 gagagggaacgttgcagtagcatgacattttcatggatgatacaattcattc 33398956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 406
Target Start/End: Complemental strand, 33262407 - 33262337
Alignment:
Q  336 ctcctattaggcatgacaataacaataatgtcattggttttgtatgttgtgcagtattttccatgacacct 406  Q
    ||||||||| |||||| |||||||||||| ||||||| ||| |||||||||  ||||||||||||||||||    
T  33262407 ctcctattatgcatgataataacaataatatcattggctttctatgttgtgttgtattttccatgacacct 33262337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 201 - 336
Target Start/End: Complemental strand, 33304437 - 33304306
Alignment:
Q  201 gagagggaacgttgcagtagcatgacactttcatggatgaaacaattcattcattctggcaaacccaccatcctaccctgactattttcatagcattcaa 300  Q
    ||||||||||||||||||||||||||| |||||||| ||| |||||||||| |    ||||||| ||| ||||||||||   |  ||| || | ||||||    
T  33304437 gagagggaacgttgcagtagcatgacattttcatggttgacacaattcattga----ggcaaactcacaatcctaccctacgtcctttgattggattcaa 33304342  T
Q  301 atagttactccaggaagtgaaattctaagttggatc 336  Q
    || ||||||||||||| |||||| | || |||||||    
T  33304341 attgttactccaggaaatgaaataccaatttggatc 33304306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 33262579 - 33262527
Alignment:
Q  201 gagagggaacgttgcagtagcatgacactttcatggatgaaacaattcattca 253  Q
    ||||||||||||||||||||||||||| ||||||||| || ||||||||||||    
T  33262579 gagagggaacgttgcagtagcatgacattttcatggacgacacaattcattca 33262527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 338 - 394
Target Start/End: Complemental strand, 33387933 - 33387877
Alignment:
Q  338 cctattaggcatgacaataacaataatgtcattggttttgtatgttgtgcagtattt 394  Q
    ||||||| ||||||||||||||||||| ||||||| ||| |||||||||||||||||    
T  33387933 cctattatgcatgacaataacaataatatcattggctttctatgttgtgcagtattt 33387877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 33057519 - 33057469
Alignment:
Q  201 gagagggaacgttgcagtagcatgacactttcatggatgaaacaattcatt 251  Q
    |||||||||| |||||| ||||||||||||| |||||||||||||||||||    
T  33057519 gagagggaacattgcaggagcatgacacttttatggatgaaacaattcatt 33057469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 33271739 - 33271689
Alignment:
Q  201 gagagggaacgttgcagtagcatgacactttcatggatgaaacaattcatt 251  Q
    ||||||||||||||||||||| ||||| |||||||||||| ||||||||||    
T  33271739 gagagggaacgttgcagtagcttgacattttcatggatgatacaattcatt 33271689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 28870224 - 28870275
Alignment:
Q  201 gagagggaacgttgcagtagcatgacactttcatggatgaaacaattcattc 252  Q
    ||||||||||||||  |||||||| || ||||||||||||||||||||||||    
T  28870224 gagagggaacgttgttgtagcatggcattttcatggatgaaacaattcattc 28870275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 397
Target Start/End: Original strand, 31563061 - 31563112
Alignment:
Q  346 gcatgacaataacaataatgtcattggttttgtatgttgtgcagtattttcc 397  Q
    ||||||||||| |||| || ||||||| ||||||||||||||||||||||||    
T  31563061 gcatgacaatatcaatgatatcattggctttgtatgttgtgcagtattttcc 31563112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 33285547 - 33285501
Alignment:
Q  204 agggaacgttgcagtagcatgacactttcatggatgaaacaattcat 250  Q
    ||||||||||||||||||||| || |||||||||||| |||||||||    
T  33285547 agggaacgttgcagtagcatggcattttcatggatgatacaattcat 33285501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 386
Target Start/End: Original strand, 28870394 - 28870446
Alignment:
Q  334 atctcctattaggcatgacaataacaataatgtcattggttttgtatgttgtg 386  Q
    |||||||||||   ||||||||||||||||| ||||||| |||||||||||||    
T  28870394 atctcctattataaatgacaataacaataatatcattggctttgtatgttgtg 28870446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 33409925 - 33409873
Alignment:
Q  201 gagagggaacgttgcagtagcatgacactttcatggatgaaacaattcattca 253  Q
    ||||||||||||||||||||||| ||| |||||||||||  ||| ||||||||    
T  33409925 gagagggaacgttgcagtagcatcacaatttcatggatggcacatttcattca 33409873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 514
Target Start/End: Complemental strand, 33387810 - 33387775
Alignment:
Q  479 aaaatgagtgttccagtaattctcaatggaggtctt 514  Q
    ||||||||||||||||| ||||||||||||||||||    
T  33387810 aaaatgagtgttccagtcattctcaatggaggtctt 33387775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 273
Target Start/End: Complemental strand, 9166700 - 9166637
Alignment:
Q  206 ggaacgttgcagtagcatgacactttcatggatgaaacaattcattcattctggcaaacccaccatcc 273  Q
    ||||| |||||||||||||||| ||||||||||||  ||||| |||||    ||||||||||||||||    
T  9166700 ggaacattgcagtagcatgacattttcatggatgatgcaatttattca----ggcaaacccaccatcc 9166637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 336
Target Start/End: Complemental strand, 33057441 - 33057400
Alignment:
Q  295 attcaaatagttactccaggaagtgaaattctaagttggatc 336  Q
    ||||||||||||| ||||||||||||||| | ||||||||||    
T  33057441 attcaaatagttaatccaggaagtgaaataccaagttggatc 33057400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 408
Target Start/End: Complemental strand, 33409747 - 33409687
Alignment:
Q  348 atgacaataacaataatgtcattggttttgtatgttgtgcagtattttccatgacacctca 408  Q
    ||||||||||||||||| | ||||| |||||| |||||| | || |||||||| |||||||    
T  33409747 atgacaataacaataatattattggctttgtaagttgtgtattaatttccatggcacctca 33409687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 17440706 - 17440872
Alignment:
Q  1 aattgaatgtttacattggctagaaatattaaatttagggggaaacgattttgtgacactacctagcctgaggaagctttctaaacttgtatatttaaat 100  Q
    ||||||||||||||||||| |||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  17440706 aattgaatgtttacattgggtagaaagattaaatttagggggaaatgattttgcgacactacctagcctgaggaagctttcgaaacttgtatatttaaat 17440805  T
Q  101 ttggaacattgcaagttgttggaatctttgcctcaacttccttttcctaccactattgggtgggaac 167  Q
    ||| | ||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||    
T  17440806 ttgcagcattgcaagttgttggaatctttgcctcaacttccttttcctaccgctatcgggcgggaac 17440872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 357 - 445
Target Start/End: Original strand, 17441110 - 17441198
Alignment:
Q  357 acaataatgtcattggttttgtatgttgtgcagtattttccatgacacctcagcatgggtattttccaccgtggtcccttatggaactg 445  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||| | ||||   |||||| ||| | ||| ||||||||||    
T  17441110 acaataatatcattggttttgtatgttgtgcagtattttccatggcacctcatcgtgggaggtttccatcgtcggcccatatggaactg 17441198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 17440935 - 17440985
Alignment:
Q  201 gagagggaacgttgcagtagcatgacactttcatggatgaaacaattcatt 251  Q
    ||||||||| ||| ||||||||||||| ||||||||||||  |||||||||    
T  17440935 gagagggaatgttacagtagcatgacattttcatggatgatgcaattcatt 17440985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 829 - 641
Alignment:
Q  1 aattgaatgtttacattggctagaaatattaaatttagggggaaacgattttgtgacactacctagcctgaggaagctttctaaacttgtatatttaaat 100  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||  |||||||||||||||||||| ||||||||||||| | ||||||||||||||||    
T  829 aattgaatgtttacatcggctagaaagattaaatttagggggaaataattttgtgacactacctagcatgaggaagctttccagacttgtatatttaaat 730  T
Q  101 ttggaacattgcaagttgttggaatctttgcctcaacttccttttcctaccactattgggtgggaacaagatgagaacaacaaatatta 189  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||| | ||||||||||  |||  |  ||||||||||| |||||||    
T  729 ttggagcattgcaagttgttggaatcgttgcctcaacttccttttccaagcactattgggccggattatcatgagaacaacgaatatta 641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 334 - 408
Target Start/End: Complemental strand, 427 - 353
Alignment:
Q  334 atctcctattaggcatgacaataacaataatgtcattggttttgtatgttgtgcagtattttccatgacacctca 408  Q
    ||||||| |||  ||||||||||| |||||| ||||||| ||||||| |||||||||||||| |||| |||||||    
T  427 atctcctgttatacatgacaataagaataatatcattggctttgtattttgtgcagtattttgcatggcacctca 353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 597 - 545
Alignment:
Q  201 gagagggaacgttgcagtagcatgacactttcatggatgaaacaattcattca 253  Q
    ||||||||| |||| |||||||| ||| |||||||||||||||||||||||||    
T  597 gagagggaatgttgtagtagcataacattttcatggatgaaacaattcattca 545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 6575 - 6387
Alignment:
Q  1 aattgaatgtttacattggctagaaatattaaatttagggggaaacgattttgtgacactacctagcctgaggaagctttctaaacttgtatatttaaat 100  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||  |||||||||||||||||||| ||||||||||||| | ||||||||||||||||    
T  6575 aattgaatgtttacatcggctagaaagattaaatttagggggaaataattttgtgacactacctagcatgaggaagctttccagacttgtatatttaaat 6476  T
Q  101 ttggaacattgcaagttgttggaatctttgcctcaacttccttttcctaccactattgggtgggaacaagatgagaacaacaaatatta 189  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||| | ||||||||||  |||  |  ||||||||||| |||||||    
T  6475 ttggagcattgcaagttgttggaatcgttgcctcaacttccttttccaagcactattgggccggattatcatgagaacaacgaatatta 6387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 334 - 408
Target Start/End: Complemental strand, 6173 - 6099
Alignment:
Q  334 atctcctattaggcatgacaataacaataatgtcattggttttgtatgttgtgcagtattttccatgacacctca 408  Q
    ||||||| |||  ||||||||||| |||||| ||||||| ||||||| |||||||||||||| |||| |||||||    
T  6173 atctcctgttatacatgacaataagaataatatcattggctttgtattttgtgcagtattttgcatggcacctca 6099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 6343 - 6291
Alignment:
Q  201 gagagggaacgttgcagtagcatgacactttcatggatgaaacaattcattca 253  Q
    ||||||||| |||| |||||||| ||| |||||||||||||||||||||||||    
T  6343 gagagggaatgttgtagtagcataacattttcatggatgaaacaattcattca 6291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 31157380 - 31157250
Alignment:
Q  20 ctagaaatattaaatttagggggaaacgattttgtgacactacctagcctgaggaagctttctaaacttgtatatttaaatttggaacattgcaagttgt 119  Q
    ||||||| ||||||| ||||||| ||| ||||||||||||| |||||||||||| ||||||| ||||||||||||||||| ||||| ||||||||| | |    
T  31157380 ctagaaagattaaatataggggggaacaattttgtgacactgcctagcctgagggagctttccaaacttgtatatttaaacttggagcattgcaagcttt 31157281  T
Q  120 tggaatctttgcctcaacttccttttcctac 150  Q
    |||||||||||||||||||||||||||||||    
T  31157280 tggaatctttgcctcaacttccttttcctac 31157250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 31498874 - 31499020
Alignment:
Q  1 aattgaatgtttacattggctagaaatattaaatttagggggaaacgattttgtgacactacctagcctgaggaagctttctaaacttgtatatttaaat 100  Q
    ||||| ||||||||||||| |||||   |||||||||||||||||| | ||||||||| |||||||||||||| | ||||| |||||||||| ||||||     
T  31498874 aattggatgtttacattggttagaagagttaaatttagggggaaacaagtttgtgacattacctagcctgagggacctttccaaacttgtatgtttaaac 31498973  T
Q  101 ttggaacattgcaagttgttggaatctttgcctcaacttccttttcc 147  Q
    || ||||||||||| ||||||||||||||||||||||||||||||||    
T  31498974 ttagaacattgcaaattgttggaatctttgcctcaacttccttttcc 31499020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 150
Target Start/End: Complemental strand, 31148477 - 31148336
Alignment:
Q  9 gtttacattggctagaaatattaaatttagggggaaacgattttgtgacactacctagcctgaggaagctttctaaacttgtatatttaaatttggaaca 108  Q
    |||||| ||||||||||| ||||||| ||||||||||| ||||||||||  |||||||||| |||||||| || | ||||| ||||||||| ||| | ||    
T  31148477 gtttacgttggctagaaagattaaatctagggggaaacaattttgtgacggtacctagccttaggaagctatccagacttgcatatttaaacttgcagca 31148378  T
Q  109 ttgcaagttgttggaatctttgcctcaacttccttttcctac 150  Q
    ||| ||||||||| |||| |||||||||||||||||| ||||    
T  31148377 ttgtaagttgttgaaatcgttgcctcaacttccttttgctac 31148336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 31478819 - 31478968
Alignment:
Q  1 aattgaatgtttacattggctagaaatattaaatttagggggaaacgattttgtgacactacctagcctgaggaagctttctaaacttgtatatttaaat 100  Q
    ||||| |||| || ||||| |||||  ||||||||||||||||||| ||||||||||| ||||||| |||||| ||||||| ||||||||||||||||      
T  31478819 aattggatgtctatattggttagaagcattaaatttagggggaaacaattttgtgacagtacctagtctgagggagctttcaaaacttgtatatttaagc 31478918  T
Q  101 ttggaacattgcaagttgttggaatctttgcctcaacttccttttcctac 150  Q
    || || ||||||||| ||||| |||||||||||  |||||||| ||||||    
T  31478919 ttagagcattgcaagctgttgaaatctttgcctgtacttccttctcctac 31478968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 29 - 150
Target Start/End: Original strand, 31504032 - 31504153
Alignment:
Q  29 ttaaatttagggggaaacgattttgtgacactacctagcctgaggaagctttctaaacttgtatatttaaatttggaacattgcaagttgttggaatctt 128  Q
    ||||| |||||||||||  ||||||||||| |||||||||||||| ||||||| ||||||||||||||||| ||||| ||||||||  ||||||||||||    
T  31504032 ttaaacttagggggaaataattttgtgacagtacctagcctgagggagctttccaaacttgtatatttaaacttggagcattgcaaactgttggaatctt 31504131  T
Q  129 tgcctcaacttccttttcctac 150  Q
    |||||   ||||||| ||||||    
T  31504132 tgcctgttcttccttctcctac 31504153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 334 - 408
Target Start/End: Original strand, 31499280 - 31499354
Alignment:
Q  334 atctcctattaggcatgacaataacaataatgtcattggttttgtatgttgtgcagtattttccatgacacctca 408  Q
    |||||| ||||  |||||||||||||||||| ||||||| ||||||||||||||||||||||| ||| |||||||    
T  31499280 atctcccattatccatgacaataacaataatatcattggctttgtatgttgtgcagtattttctatggcacctca 31499354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 48 - 143
Target Start/End: Original strand, 31472411 - 31472506
Alignment:
Q  48 attttgtgacactacctagcctgaggaagctttctaaacttgtatatttaaatttggaacattgcaagttgttggaatctttgcctcaacttcctt 143  Q
    ||||||||||| ||||||||| |||| ||||||| ||||||||||||||||| || |||||| ||  |  |||| ||||||||||| |||||||||    
T  31472411 attttgtgacagtacctagcccgagggagctttccaaacttgtatatttaaacttagaacatcgcccgcagttgaaatctttgcctaaacttcctt 31472506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 334 - 396
Target Start/End: Original strand, 31472775 - 31472837
Alignment:
Q  334 atctcctattaggcatgacaataacaataatgtcattggttttgtatgttgtgcagtattttc 396  Q
    |||||| |||| ||||||||||||||||||| ||||||||| | ||||||||| |||||||||    
T  31472775 atctcccattatgcatgacaataacaataatatcattggttgtatatgttgtgtagtattttc 31472837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 206 - 333
Target Start/End: Original strand, 31479068 - 31479191
Alignment:
Q  206 ggaacgttgcagtagcatgacactttcatggatgaaacaattcattcattctggcaaacccaccatcctaccctgactattttcatagcattcaaatagt 305  Q
    ||||||||| |||||||||||| |||||||||||| ||||||||||||    |||||||| || || || || |||||  | | ||||  ||||||| ||    
T  31479068 ggaacgttggagtagcatgacattttcatggatgatacaattcattca----ggcaaaccgacaattctcccatgactcctctgatagggttcaaattgt 31479163  T
Q  306 tactccaggaagtgaaattctaagttgg 333  Q
    ||||||||| |||||||| | |||||||    
T  31479164 tactccaggtagtgaaatgccaagttgg 31479191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 333
Target Start/End: Original strand, 31472615 - 31472733
Alignment:
Q  211 gttgcagtagcatgacactttcatggatgaaacaattcattcattctggcaaacccaccatcctaccctgactattttcatagcattcaaatagttactc 310  Q
    |||||| || ||||||| |||||||||||| |||| |||||||    |||||| |||| ||||| |||||||| || | |||  ||||| || |||||||    
T  31472615 gttgcactaacatgacattttcatggatgatacaactcattca----ggcaaatccacaatccttccctgactgttatgatataattcagattgttactc 31472710  T
Q  311 caggaagtgaaattctaagttgg 333  Q
    ||||||||||||| | |||||||    
T  31472711 caggaagtgaaataccaagttgg 31472733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 407
Target Start/End: Original strand, 31479234 - 31479306
Alignment:
Q  335 tctcctattaggcatgacaataacaataatgtcattggttttgtatgttgtgcagtattttccatgacacctc 407  Q
    ||||| |||| ||| ||||||||||||||| || |||| | ||||||||||| ||||||||| ||||||||||    
T  31479234 tctccgattatgcacgacaataacaataatatcgttggctgtgtatgttgtgtagtattttctatgacacctc 31479306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 31017691 - 31017634
Alignment:
Q  40 gggaaacgattttgtgacactacctagcctgaggaagctttctaaacttgtatattta 97  Q
    ||||||| |||||||||| || ||||| || ||| |||||||||||||||||||||||    
T  31017691 gggaaacaattttgtgactctgcctagtctcagggagctttctaaacttgtatattta 31017634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 31491627 - 31491726
Alignment:
Q  16 ttggctagaaatattaaatttagggggaaacgattttgtgacactacctagcctgaggaagctttctaaacttgtatatttaaatttggaacattgcaag 115  Q
    |||| |||||| | |||||||| |||||||| ||||||| ||| | ||||||||  || | | ||||| ||||| ||| ||||||||||| |||||||||    
T  31491627 ttggttagaaagactaaatttaaggggaaacaattttgtcacattgcctagcctccgggatcattctagacttgaatacttaaatttggagcattgcaag 31491726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 400
Target Start/End: Original strand, 31504424 - 31504478
Alignment:
Q  346 gcatgacaataacaataatgtcattggttttgtatgttgtgcagtattttccatg 400  Q
    |||||||  ||| |||||| ||||||||| ||||||||||| |||||||||||||    
T  31504424 gcatgactttaaaaataatatcattggttgtgtatgttgtgtagtattttccatg 31504478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 31526574 - 31526532
Alignment:
Q  16 ttggctagaaatattaaatttagggggaaacgattttgtgaca 58  Q
    |||| |||||| ||||||||||||||||||| |||||||||||    
T  31526574 ttggttagaaagattaaatttagggggaaacaattttgtgaca 31526532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 28 - 142
Target Start/End: Original strand, 6785240 - 6785354
Alignment:
Q  28 attaaatttagggggaaacgattttgtgacactacctagcctgaggaagctttctaaacttgtatatttaaatttggaacattgcaagttgttggaatct 127  Q
    ||||||||||||||||||| ||||||||||| | |||||||||| | ||||||| ||||| ||||||||||| ||||| || |||||||||||| ||| |    
T  6785240 attaaatttagggggaaaccattttgtgacattgcctagcctgaaggagctttccaaactcgtatatttaaacttggatcactgcaagttgttgaaatat 6785339  T
Q  128 ttgcctcaacttcct 142  Q
    |||||| | ||||||    
T  6785340 ttgcctgatcttcct 6785354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 182 times since January 2019
Visitors: 2563