View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254-INSERTION-10 (Length: 286)
Name: NF0254-INSERTION-10
Description: NF0254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254-INSERTION-10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 46620312 - 46620088
Alignment:
| Q |
1 |
tcatttgctatacattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcggattcatatcaggctgttgttccaaagaaccaacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46620312 |
tcatttgctatacattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcggattcatatcaggctgttgttccaaagaaccaacat |
46620213 |
T |
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| Q |
101 |
cacaagggattctcaaaggctccttaactacttcctgagaagcatatgttagacatggattttttgccgttaggccttgctcatcttcagctgccattgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46620212 |
cacaagggattctcaaaggctccttaactacttcctgagaagcatatgttagacatggattttttgccgttaggccttgctcatcttcagctgccattgc |
46620113 |
T |
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| Q |
201 |
cactgttttgctattttcagaattc |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
46620112 |
cactgttttgctattttcagaattc |
46620088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 46639030 - 46638810
Alignment:
| Q |
1 |
tcatttgctatacattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcggattcatatcaggctgttgttccaaagaaccaacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46639030 |
tcatttgctatacattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcggattcatatcaggctgttgttccaaagaaccaacat |
46638931 |
T |
|
| Q |
101 |
cacaagggattctcaaaggctccttaactacttcctgagaagcatatgttagacatggattttttgccgttaggccttgctcatcttcagctgccattgc |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||| |
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| T |
46638930 |
cacaagggattctcaaaggctcctgaactacttcctgagaagcagatgttagacatggatcttttgcctttaggccttgctcattttcggctgccattgc |
46638831 |
T |
|
| Q |
201 |
cactgttttgctattttcaga |
221 |
Q |
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|||||||||||||||||||| |
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| T |
46638830 |
tactgttttgctattttcaga |
46638810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 46172974 - 46173141
Alignment:
| Q |
1 |
tcatttgctatacattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcggattcatatcaggctgttgttccaaagaaccaacat |
100 |
Q |
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||||||||||||||||||||||||||||| || || |||||||| |||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
46172974 |
tcatttgctatacattccaatgctctaactgtcaacggtctgtttctagtgctctgtctcctgggatttatatcaggctgttgttccaaagaaccaacat |
46173073 |
T |
|
| Q |
101 |
cacaagggattctcaaaggctccttaactacttcctgagaagcatatgttagacatggattttttgcc |
168 |
Q |
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| T |
46173074 |
cacaagggattctcagaggctcctcaactacttcctgagtggcagctgttagacatggatcttttgcc |
46173141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 46641746 - 46641966
Alignment:
| Q |
1 |
tcatttgctatacattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcggattcatatcaggctgttgttccaaagaaccaacat |
100 |
Q |
| |
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|||||||| |||||||||||||||||||| || | | |||||| |||| ||| ||||||||| |||| ||||||| ||||| |||||||||| |||||| |
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| T |
46641746 |
tcatttgcaatacattccaatgctctaactgtcagcgatctgtttctagtgctttgtctcctcagatttatatcagcctgtttttccaaagaatcaacat |
46641845 |
T |
|
| Q |
101 |
cacaagggattctcaaaggctccttaactacttcctgagaagcatatgttagacatggattttttgccgttaggccttgctcatcttcagctgccattgc |
200 |
Q |
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||||||| |||||| |||||||| |||||||||||||| |||| ||| ||||||||||| |||| | ||||||| |||||| |||| || || | || |
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| T |
46641846 |
cacaaggtgttctcagaggctcctcaactacttcctgagtagcagatgctagacatggatcatttgtctttaggccatgctcaccttcctctaccgtcgc |
46641945 |
T |
|
| Q |
201 |
cactgttttgctattttcaga |
221 |
Q |
| |
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|| ||||||| ||||| |||| |
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| T |
46641946 |
cattgttttgatatttacaga |
46641966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 46630809 - 46630703
Alignment:
| Q |
1 |
tcatttgctatacattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcggattcatatcaggctgttgttccaaagaaccaacat |
100 |
Q |
| |
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|||||||||||| |||||||||||||||| || || ||||| || ||| |||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
46630809 |
tcatttgctatatattccaatgctctaactgtcaatggtctttttctattgctctgtctcctcggatttatatcaggctgttgttccaacgaaccaacat |
46630710 |
T |
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| Q |
101 |
cacaagg |
107 |
Q |
| |
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||||||| |
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| T |
46630709 |
cacaagg |
46630703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 219 - 286
Target Start/End: Complemental strand, 7837691 - 7837624
Alignment:
| Q |
219 |
agaattccgtccttaccctcttcttcgaaagcggttgctgcggcgtctgtatggaaaattgtgcacca |
286 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7837691 |
agaatttcgtccttaccctcttcttcgaaagcggttgctgcggcgtctgtatggaaaattgtgcacca |
7837624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 15768116 - 15768291
Alignment:
| Q |
1 |
tcatttgctatacattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcggattcatatcaggctgttgttccaaagaaccaacat |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||| || || |||||||| |||| ||| |||| ||| ||||| ||||||||||||| ||||||| ||||||||| |
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| T |
15768116 |
tcatttgctatacattctaatgctctaactgtcaacggtctgtttctagtgctttgtcgcctaggatttatatcaggctgtttttccaaataaccaacat |
15768215 |
T |
|
| Q |
101 |
cacaagggattctcaaaggctccttaactacttcctgagaagcatatgttagacatggattttttgccgttaggccttgctc |
182 |
Q |
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| | |||||| |||| || |||||||||||||| ||| |||||||||||||| |||| || |||||| |||||| |
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| T |
15768216 |
c------ggttctcagaggcaactcaactacttcctgagtggcagctgttagacatggatctttttcctttaggcgttgctc |
15768291 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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