View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0254-INSERTION-12 (Length: 159)

Name: NF0254-INSERTION-12
Description: NF0254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0254-INSERTION-12
NF0254-INSERTION-12
[»] chr4 (3 HSPs)
chr4 (1-97)||(18141223-18141319)
chr4 (1-97)||(56576717-56576813)
chr4 (22-97)||(26760203-26760278)
[»] chr1 (3 HSPs)
chr1 (1-97)||(49480686-49480782)
chr1 (1-97)||(44278633-44278729)
chr1 (32-97)||(21825661-21825726)
[»] chr3 (2 HSPs)
chr3 (1-97)||(7140141-7140237)
chr3 (1-50)||(43100149-43100198)
[»] chr5 (1 HSPs)
chr5 (92-159)||(7837624-7837691)
[»] scaffold0265 (2 HSPs)
scaffold0265 (32-97)||(2195-2260)
scaffold0265 (32-97)||(7084-7149)


Alignment Details
Target: chr4 (Bit Score: 93; Significance: 1e-45; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 18141319 - 18141223
Alignment:
Q  1 ctctttacgatgaaaaatagcaaaaacaggtgttttgtttaacgcctccttttatacaatgcggaattgatgacctacgtataaattaatcagaatt 97  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18141319 ctctttacgatgaaaaataggaaaaacaggtgttttgtttaacgcctccttttatacaatgcggaattgatgacctacgtataaattaatcagaatt 18141223  T

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Target: chr4; HSP #2
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 56576813 - 56576717
Alignment:
Q  1 ctctttacgatgaaaaatagcaaaaacaggtgttttgtttaacgcctccttttatacaatgcggaattgatgacctacgtataaattaatcagaatt 97  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56576813 ctctttacgatgaaaaataggaaaaacaggtgttttgtttaacgcctccttttatacaatgcggaattgatgacctacgtataaattaatcagaatt 56576717  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 26760203 - 26760278
Alignment:
Q  22 aaaaacaggtgttttgtttaacgcctccttttatacaatgcggaattgatgacctacgtataaattaatcagaatt 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26760203 aaaaacaggtgttttgtttaacgcctccttttatacaatgcggaattgatgacctacgtttaaattaatcagaatt 26760278  T

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Target: chr1 (Bit Score: 93; Significance: 1e-45; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 49480686 - 49480782
Alignment:
Q  1 ctctttacgatgaaaaatagcaaaaacaggtgttttgtttaacgcctccttttatacaatgcggaattgatgacctacgtataaattaatcagaatt 97  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49480686 ctctttacgatgaaaaataggaaaaacaggtgttttgtttaacgcctccttttatacaatgcggaattgatgacctacgtataaattaatcagaatt 49480782  T

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Target: chr1; HSP #2
Raw Score: 85; E-Value: 8e-41
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 44278729 - 44278633
Alignment:
Q  1 ctctttacgatgaaaaatagcaaaaacaggtgttttgtttaacgcctccttttatacaatgcggaattgatgacctacgtataaattaatcagaatt 97  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44278729 ctctttacgatgaaaaataggaaaaacaagtgttttgtttaacgcctccttttatacaatgcggaattgatgacctacatataaattaatcagaatt 44278633  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 21825661 - 21825726
Alignment:
Q  32 gttttgtttaacgcctccttttatacaatgcggaattgatgacctacgtataaattaatcagaatt 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21825661 gttttgtttaacgcctccttttatacaatgcggaattgatgacctacgtataaattaatcagaatt 21825726  T

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Target: chr3 (Bit Score: 85; Significance: 8e-41; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 8e-41
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 7140237 - 7140141
Alignment:
Q  1 ctctttacgatgaaaaatagcaaaaacaggtgttttgtttaacgcctccttttatacaatgcggaattgatgacctacgtataaattaatcagaatt 97  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7140237 ctctttacgatgaaaaataggaaaaacaggtgttttgtttaacgtctccttttatacaatgcagaattgatgacctacgtataaattaatcagaatt 7140141  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 43100149 - 43100198
Alignment:
Q  1 ctctttacgatgaaaaatagcaaaaacaggtgttttgtttaacgcctcct 50  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  43100149 ctctttacgatgaaaaataggaaaagcaggtgttttgtttaacgcctcct 43100198  T

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Target: chr5 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 7837691 - 7837624
Alignment:
Q  92 agaatttcgtccttaccctcttcttcgaaagcggttgctgcggcgtctgtatggaaaattgtgcacca 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7837691 agaatttcgtccttaccctcttcttcgaaagcggttgctgcggcgtctgtatggaaaattgtgcacca 7837624  T

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Target: scaffold0265 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 2260 - 2195
Alignment:
Q  32 gttttgtttaacgcctccttttatacaatgcggaattgatgacctacgtataaattaatcagaatt 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2260 gttttgtttaacgcctccttttatacaatgcggaattgatgacctacgtataaattaatcagaatt 2195  T

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Target: scaffold0265; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 7149 - 7084
Alignment:
Q  32 gttttgtttaacgcctccttttatacaatgcggaattgatgacctacgtataaattaatcagaatt 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7149 gttttgtttaacgcctccttttatacaatgcggaattgatgacctacgtataaattaatcagaatt 7084  T

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