View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0254-INSERTION-13 (Length: 120)

Name: NF0254-INSERTION-13
Description: NF0254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0254-INSERTION-13
NF0254-INSERTION-13
[»] chr6 (2 HSPs)
chr6 (8-61)||(13550380-13550433)
chr6 (64-102)||(13550328-13550366)
[»] chr7 (3 HSPs)
chr7 (7-49)||(27273122-27273164)
chr7 (10-49)||(9332985-9333024)
chr7 (63-102)||(27273058-27273097)
[»] chr4 (2 HSPs)
chr4 (63-95)||(39482484-39482516)
chr4 (7-48)||(7807635-7807676)
[»] chr3 (2 HSPs)
chr3 (10-49)||(22157926-22157965)
chr3 (7-61)||(6077733-6077787)
[»] chr8 (1 HSPs)
chr8 (7-49)||(43651707-43651749)
[»] chr5 (1 HSPs)
chr5 (7-49)||(21114916-21114958)
[»] scaffold0039 (2 HSPs)
scaffold0039 (7-48)||(81391-81432)
scaffold0039 (63-102)||(81446-81485)


Alignment Details
Target: chr6 (Bit Score: 54; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 13550380 - 13550433
Alignment:
Q  8 aaaacaatagaacccctcaatcctcaattctcattagcaattttccaatagaaa 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13550380 aaaacaatagaacccctcaatcctcaattctcattagcaattttccaatagaaa 13550433  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 13550328 - 13550366
Alignment:
Q  64 aattgtaatttggaacgtccctgctcccattttcattgg 102  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13550328 aattgtaatttggaacgtccctgctcccattttcattgg 13550366  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 27273122 - 27273164
Alignment:
Q  7 aaaaacaatagaacccctcaatcctcaattctcattagcaatt 49  Q
    |||||||||||| || |||||||||||||||||||||||||||    
T  27273122 aaaaacaatagagccgctcaatcctcaattctcattagcaatt 27273164  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 9332985 - 9333024
Alignment:
Q  10 aacaatagaacccctcaatcctcaattctcattagcaatt 49  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  9332985 aacaatagaaccgctcattcctcaattctcattagcaatt 9333024  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 102
Target Start/End: Original strand, 27273058 - 27273097
Alignment:
Q  63 caattgtaatttggaacgtccctgctcccattttcattgg 102  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  27273058 caattgtaatttggaacgtccatactcccattttcattgg 27273097  T

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Target: chr4 (Bit Score: 33; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 95
Target Start/End: Original strand, 39482484 - 39482516
Alignment:
Q  63 caattgtaatttggaacgtccctgctcccattt 95  Q
    |||||||||||||||||||||||||||||||||    
T  39482484 caattgtaatttggaacgtccctgctcccattt 39482516  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 7807635 - 7807676
Alignment:
Q  7 aaaaacaatagaacccctcaatcctcaattctcattagcaat 48  Q
    ||||||||||| ||| |||||||||||||||| |||||||||    
T  7807635 aaaaacaatagtaccgctcaatcctcaattcttattagcaat 7807676  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 22157926 - 22157965
Alignment:
Q  10 aacaatagaacccctcaatcctcaattctcattagcaatt 49  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  22157926 aacaatagaaccgctcattcctcaattctcattagcaatt 22157965  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 6077787 - 6077733
Alignment:
Q  7 aaaaacaatagaacccctcaatcctcaattctcattagcaattttccaatagaaa 61  Q
    ||||||||||||||   ||||||||||||||||||| |||||| || ||||||||    
T  6077787 aaaaacaatagaactggtcaatcctcaattctcatttgcaattgtcaaatagaaa 6077733  T

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Target: chr8 (Bit Score: 31; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 43651707 - 43651749
Alignment:
Q  7 aaaaacaatagaacccctcaatcctcaattctcattagcaatt 49  Q
    ||||||||||||||   ||||||||||||||||||||||||||    
T  43651707 aaaaacaatagaactgttcaatcctcaattctcattagcaatt 43651749  T

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Target: chr5 (Bit Score: 31; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 21114916 - 21114958
Alignment:
Q  7 aaaaacaatagaacccctcaatcctcaattctcattagcaatt 49  Q
    ||||||||||||||   ||||||||||||||||||||||||||    
T  21114916 aaaaacaatagaactgttcaatcctcaattctcattagcaatt 21114958  T

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Target: scaffold0039 (Bit Score: 30; Significance: 0.00000004; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 81432 - 81391
Alignment:
Q  7 aaaaacaatagaacccctcaatcctcaattctcattagcaat 48  Q
    ||||| ||||||||| ||||||||||||||||||| ||||||    
T  81432 aaaaaaaatagaacctctcaatcctcaattctcatcagcaat 81391  T

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Target: scaffold0039; HSP #2
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 102
Target Start/End: Complemental strand, 81485 - 81446
Alignment:
Q  63 caattgtaatttggaacgtccctgctcccattttcattgg 102  Q
    |||||||||||| ||||||||||| |||||||||| ||||    
T  81485 caattgtaatttcgaacgtccctgatcccattttctttgg 81446  T

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