View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254-INSERTION-3 (Length: 501)
Name: NF0254-INSERTION-3
Description: NF0254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254-INSERTION-3 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 9 - 351
Target Start/End: Original strand, 49608870 - 49609212
Alignment:
| Q |
9 |
aaacacaaataaaagagaggaataaaatgaaattcctattaagttgtttaataaattaagagaaaaacgaagatgcaaagttaacagaacatatgaataa |
108 |
Q |
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| T |
49608870 |
aaacacaaataaaagagaggaataaaatgaaattcctattaagttgtttaataaattaagagaaaaacgaagatgcaaagttaacagaacatatgaataa |
49608969 |
T |
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| Q |
109 |
aggattcggatgaaggagaaaatacgagaacaacgaagatgcaatattcataaaggatttgaataaagacaattcaaatcattacaaagtttaagtacaa |
208 |
Q |
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| T |
49608970 |
aggattcggatgaagcagaaaatacgagaacaacgaagatgcaatattcataaaggatttgaataaagacaattcaaatcattacaaagtttaagtacaa |
49609069 |
T |
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| Q |
209 |
agctaaatcaatgattcactacaataatccaaacataagcaatacccttttatgatggatctatctttttgtataaatgctttcaaattattgcggtcat |
308 |
Q |
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| T |
49609070 |
agctaaaccaatgattcactacaataatccaaacataagcaatacccttttatgatggatctatctttttgtataaatgctttcaaattattgtggtcat |
49609169 |
T |
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| Q |
309 |
tttttacattactgtactannnnnnnacagaaaaaatcttctc |
351 |
Q |
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| T |
49609170 |
tttttacattactgtactattttttaacagaaaaaatcttctc |
49609212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 416 - 501
Target Start/End: Original strand, 49608786 - 49608874
Alignment:
| Q |
416 |
aattgtggatatttatcaagcgcaaatatataaagccgtctttactc---ctcttgttagaaagctcatatatatgacgagtttaaaca |
501 |
Q |
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| T |
49608786 |
aattgtggatatttatcaagtgcaaatatataaagccgtctttactccttctcttgttagaaagctcatatatatgacgagtttaaaca |
49608874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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