View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254-INSERTION-6 (Length: 410)
Name: NF0254-INSERTION-6
Description: NF0254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254-INSERTION-6 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 7e-96; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 31949700 - 31949885
Alignment:
| Q |
8 |
tgtgcaacgcccgtaagttgatggcaggaataaagatcaaacttggtttcacgggagcagatagcaataaggttgtgtatctatgtgcacctccaatgtt |
107 |
Q |
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| T |
31949700 |
tgtgcaacgcccgtaagttgatggcaggaataaagatcaaacttggtgtcacgggagcagatagcaataaggttgtgtatctatgtgcacctccaatgtt |
31949799 |
T |
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| Q |
108 |
ggtgttgaagacaaaattgcctccatctataggcattggcgaaaatggtccgtcttatcgatttgagcagcttttctgaaagaatt |
193 |
Q |
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| T |
31949800 |
ggtgttgaagacaaaattgcctccatctataggcattggtgaaaatggtccgtcttatcgatttgagcagcttttctgaaagaatt |
31949885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 190 - 409
Target Start/End: Original strand, 31949485 - 31949701
Alignment:
| Q |
190 |
aattgtcaaggagttaacagctgcggacatttcttctggagtgctggtgagttttaccatacactttttcttttatgctgtggttagatatatgtg--tg |
287 |
Q |
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| T |
31949485 |
aattgtcaaggagttaacagctgcggacatttcttctggagtgttggtgagttttaccttacactttt-cttttatgctgcggacatttctatcccactg |
31949583 |
T |
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| Q |
288 |
ttggcctctaacttgagatgcannnnnnnattacaatcagaagctatttggaaattggttatggatttctgtcatgatcaagatttgtcttgtgtatttt |
387 |
Q |
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| T |
31949584 |
ttt---tctaacttgagatgcatttttt-attacaatcagaagctatttggaaattggttatggatttctgtcatgatcaagatttgtcttgtgtatttt |
31949679 |
T |
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| Q |
388 |
ctggtgagcggccacctctgtg |
409 |
Q |
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| T |
31949680 |
ctggtgagtggccacctctgtg |
31949701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 171
Target Start/End: Complemental strand, 29707581 - 29707501
Alignment:
| Q |
91 |
tgtgcacctccaatgttggtgttgaagacaaaattgcctccatctataggcattggcgaaaatggtccgtcttatcgattt |
171 |
Q |
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| T |
29707581 |
tgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcactggaggaaatggtccatcttatcaattt |
29707501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 27510214 - 27510029
Alignment:
| Q |
8 |
tgtgcaacgcccgtaagttgatggcaggaataaagatcaaacttggtttcacgggagcagatagcaataaggttgtgtatctatgtgcacctccaatgtt |
107 |
Q |
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| T |
27510214 |
tgtgcagcgcgcgtaagttgattgaaggagcaaagatcaaattaggtgtcacgggagcagctaacaatagggttgtctatctttgtgcgcctccaatgtt |
27510115 |
T |
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| Q |
108 |
ggtgttgaagacaaaattgcctccatctataggcattggcgaaaatggtccgtcttatcgatttgagcagcttttctgaaagaatt |
193 |
Q |
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| T |
27510114 |
ggtgctgagaacaaaaatgcctccatctgcaagcattggagaaaatggtccatcttatcaatttaagcagtatttctggaagaatt |
27510029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 27271184 - 27271377
Alignment:
| Q |
8 |
tgtgcaacgcccgtaagttgatggcaggaataaagatcaaacttggtttcacgggagcagatagcaat--------aaggttgtgtatctatgtgcacct |
99 |
Q |
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| T |
27271184 |
tgtgcaacgcgcgtaagttgattgaaggagcaaatatcaaattaggtgtcacgggagcagctaacaatggggacatagggttgtctatcattgtgcgcct |
27271283 |
T |
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| Q |
100 |
ccaatgttggtgttgaagacaaaattgcctccatctataggcattggcgaaaatggtccgtcttatcgatttgagcagcttttctgaaagaatt |
193 |
Q |
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| T |
27271284 |
ccaatgttggtgttgagaacaaaaatgcctccatcagcaagcactggaggaaatggtccatcttatcaatttaagcactatttctggaagaatt |
27271377 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 39210719 - 39210904
Alignment:
| Q |
8 |
tgtgcaacgcccgtaagttgatggcaggaataaagatcaaacttggtttcacgggagcagatagcaataaggttgtgtatctatgtgcacctccaatgtt |
107 |
Q |
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| T |
39210719 |
tgtgcagcgcgcataagttgattgaaggagcaaagatcaaattaggtgtcacaggagcagctaacaatagggttgtctatctttgtgcgcctccaatgtt |
39210818 |
T |
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| Q |
108 |
ggtgttgaagacaaaattgcctccatctataggcattggcgaaaatggtccgtcttatcgatttgagcagcttttctgaaagaatt |
193 |
Q |
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| T |
39210819 |
ggtgctgagaacaaaaatgcctccatctgcaagcattggagaaaatggtccatcttatcaatttaagcagtatttctggaagaatt |
39210904 |
T |
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