View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254-INSERTION-7 (Length: 262)
Name: NF0254-INSERTION-7
Description: NF0254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254-INSERTION-7 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 3e-68; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 3e-68
Query Start/End: Original strand, 97 - 253
Target Start/End: Complemental strand, 10345506 - 10345350
Alignment:
| Q |
97 |
aattgtgacttggtcatttaaattaaaactacacattttcctcctaattattggcttagtggctgtacttgtgagaaataatggcaacattaggaagcat |
196 |
Q |
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| T |
10345506 |
aattgtgacttagtcatttaaattaaaactacacgttttcctcctaattattggcttagtggctgtacttgtgagaaataatggcaacattaggaagcat |
10345407 |
T |
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| Q |
197 |
ggaaytagtcaaataattggtattgacgagatttctgctgctaccttatgtttatgc |
253 |
Q |
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|| | |||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
10345406 |
ggcattagtcaaataattggtattgtagagatttctgctgctaccttatgtctatgc |
10345350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 41943763 - 41943675
Alignment:
| Q |
12 |
caacgtgtgtatatttgtgttctctctctatgccactttgtttattttgttcctaaaaccaagccacacattaaccacctatctgaatt |
100 |
Q |
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| T |
41943763 |
caacatgtgtatatttgtgtcctctctctatgccactttgtttattttgttcctaaaaccaagccacacattaaccacctatctgaatt |
41943675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 113 - 208
Target Start/End: Complemental strand, 41943858 - 41943761
Alignment:
| Q |
113 |
tttaaattaaaactacacattttcctcctaattatt-ggcttagtggctgtac-ttgtgagaaataatggcaacattaggaagcatggaaytagtcaa |
208 |
Q |
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| T |
41943858 |
tttaaattaaaactacacgttttcctcctaattatttggcttagtggctgtacattgtgagaaataatggcaacattaggaagcatggaattagtcaa |
41943761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 10345356 - 10345294
Alignment:
| Q |
38 |
tctatgccactttgtttattttgttcctaaaaccaagccacacattaaccacctatctgaatt |
100 |
Q |
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| T |
10345356 |
tctatgccactttgtttattttgttcctaaaaccaagccacacattaaccacctatctgaatt |
10345294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 97 - 208
Target Start/End: Complemental strand, 42078304 - 42078192
Alignment:
| Q |
97 |
aattgtgacttggtcatttaaattaaaactacacattttcctcctaattatt-ggcttagtggctgtacttgtgagaaataatggcaacattaggaagca |
195 |
Q |
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| T |
42078304 |
aattgtgacttggtcatttaaattaaaactacacgttttcctcctaattatttggcttagtagctgtacttgtgagaaataatggcaacattaggaagca |
42078205 |
T |
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| Q |
196 |
tggaaytagtcaa |
208 |
Q |
| |
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|| || ||||||| |
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| T |
42078204 |
tgaaattagtcaa |
42078192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 42078194 - 42078106
Alignment:
| Q |
12 |
caacgtgtgtatatttgtgttctctctctatgccactttgtttattttgttcctaaaaccaagccacacattaaccacctatctgaatt |
100 |
Q |
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| T |
42078194 |
caacgtgtgtaaatttgtgtcctctctctatgccactttgtttattttgttcctaaaaccaagccacacattaaccacctatctgaatt |
42078106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 40842471 - 40842417
Alignment:
| Q |
136 |
cctcctaattatt-ggcttagtggctgtacttgtgagaaataatggcaacattag |
189 |
Q |
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| T |
40842471 |
cctcctaattatttggcttagtggctgcacttgagataaataatagcaacattag |
40842417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 15990887 - 15990843
Alignment:
| Q |
56 |
ttttgttcctaaaaccaagccacacattaaccacctatctgaatt |
100 |
Q |
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| T |
15990887 |
ttttgttcctaaaatcaagccacacattaaccacctatctgaatt |
15990843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 15996497 - 15996448
Alignment:
| Q |
7 |
acagccaacgtgtgtatatttgtgttctctctctatgccactttgtttat |
56 |
Q |
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| T |
15996497 |
acagccaacatgtgtatatttgtgtcctctctctatgtcactttgtttat |
15996448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 9992490 - 9992544
Alignment:
| Q |
136 |
cctcctaattatt-ggcttagtggctgtacttgtgagaaataatggcaacattag |
189 |
Q |
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| T |
9992490 |
cctcctaattatttggcttagtggctgcacttgagagaaataatagcaacattag |
9992544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 31281332 - 31281292
Alignment:
| Q |
53 |
ttattttgttcctaaaaccaagccacacattaaccacctat |
93 |
Q |
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| T |
31281332 |
ttattttgttcctaaaatcaagccacacgttagccacctat |
31281292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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